RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 TNNT2P45379 298 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-214ENST00000620676 GZF1Q9H116 711 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-214ENST00000620676 NCLP19338 710 aaKnown RBP6.79□□□□□ -1.32
VPS13D-214ENST00000620676 BRPF3Q9ULD4 1205 aa6.78□□□□□ -1.32
VPS13D-214ENST00000620676 PLEKHG5O94827 1062 aa6.78□□□□□ -1.32
VPS13D-214ENST00000620676 SLC4A3P48751 1232 aa6.77□□□□□ -1.33
VPS13D-214ENST00000620676 TRIM44Q96DX7 344 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-214ENST00000620676 PPP4R2Q9NY27 417 aa6.75□□□□□ -1.33
VPS13D-214ENST00000620676 HSP90AA2PQ14568 343 aaPredicted RBP6.74□□□□□ -1.33
VPS13D-214ENST00000620676 MAPK8IP2Q13387 824 aaPredicted RBP6.74□□□□□ -1.33
VPS13D-214ENST00000620676 MRS2Q9HD23 443 aa6.74□□□□□ -1.33
VPS13D-214ENST00000620676 CDK11BP21127 795 aaKnown RBP6.72□□□□□ -1.33
VPS13D-214ENST00000620676 RSPH6AQ9H0K4 717 aa6.72□□□□□ -1.33
VPS13D-214ENST00000620676 RGS3P49796 1198 aa6.72□□□□□ -1.33
VPS13D-214ENST00000620676 DDRGK1Q96HY6 314 aa6.72□□□□□ -1.33
VPS13D-214ENST00000620676 PPM1GO15355 546 aaPredicted RBP6.71□□□□□ -1.33
VPS13D-214ENST00000620676 PTMAP06454 111 aaKnown RBP6.71□□□□□ -1.34
VPS13D-214ENST00000620676 DNTTIP2Q5QJE6 756 aaKnown RBP6.71□□□□□ -1.34
VPS13D-214ENST00000620676 MSH5O43196 834 aa6.7□□□□□ -1.34
VPS13D-214ENST00000620676 PNNQ9H307 717 aaKnown RBP6.7□□□□□ -1.34
VPS13D-214ENST00000620676 BAZ1BQ9UIG0 1483 aaKnown RBP6.7□□□□□ -1.34
VPS13D-214ENST00000620676 ARID3CA6NKF2 412 aa6.69□□□□□ -1.34
VPS13D-214ENST00000620676 IPO9Q96P70 1041 aaKnown RBP6.69□□□□□ -1.34
VPS13D-214ENST00000620676 PAK3O75914 559 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-214ENST00000620676 SLC24A1O60721 1099 aa6.68□□□□□ -1.34
VPS13D-214ENST00000620676 USP35Q9P2H5 1018 aa6.68□□□□□ -1.34
VPS13D-214ENST00000620676 UPF2Q9HAU5 1272 aaKnown RBP6.67□□□□□ -1.34
VPS13D-214ENST00000620676 P3H3Q8IVL6 736 aa6.67□□□□□ -1.34
VPS13D-214ENST00000620676 TMC1Q8TDI8 760 aa6.65□□□□□ -1.34
VPS13D-214ENST00000620676 CCDC180Q9P1Z9 1646 aa6.65□□□□□ -1.34
VPS13D-214ENST00000620676 BECN1Q14457 450 aa6.65□□□□□ -1.35
VPS13D-214ENST00000620676 SIN3AQ96ST3 1273 aa6.65□□□□□ -1.35
VPS13D-214ENST00000620676 SLKQ9H2G2 1235 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-214ENST00000620676 BCL11BQ9C0K0 894 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-214ENST00000620676 PLCB2Q00722 1185 aa6.63□□□□□ -1.35
VPS13D-214ENST00000620676 FAM13BQ9NYF5 915 aa6.63□□□□□ -1.35
VPS13D-214ENST00000620676 FOXD4L1Q9NU39 408 aa6.63□□□□□ -1.35
VPS13D-214ENST00000620676 GSE1Q14687 1217 aa6.62□□□□□ -1.35
VPS13D-214ENST00000620676 RBM10P98175 930 aaKnown RBP6.62□□□□□ -1.35
VPS13D-214ENST00000620676 UBE2Q2Q8WVN8 375 aa6.62□□□□□ -1.35
VPS13D-214ENST00000620676 FRAT1Q92837 279 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-214ENST00000620676 L1TD1Q5T7N2 865 aaKnown RBP6.61□□□□□ -1.35
VPS13D-214ENST00000620676 ZMYND15Q9H091 742 aa6.6□□□□□ -1.35
VPS13D-214ENST00000620676 FANCIQ9NVI1 1328 aa6.6□□□□□ -1.35
VPS13D-214ENST00000620676 GOLGA6L3A6NEY3 463 aa6.59□□□□□ -1.35
VPS13D-214ENST00000620676 KDM2AQ9Y2K7 1162 aa6.59□□□□□ -1.35
VPS13D-214ENST00000620676 PRDM10Q9NQV6 1147 aa6.58□□□□□ -1.36
VPS13D-214ENST00000620676 TONSLQ96HA7 1378 aa6.58□□□□□ -1.36
VPS13D-214ENST00000620676 TNNT3P45378 269 aaPredicted RBP6.58□□□□□ -1.36
VPS13D-214ENST00000620676 SENP3Q9H4L4 574 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-214ENST00000620676 MSNP26038 577 aaKnown RBP6.57□□□□□ -1.36
VPS13D-214ENST00000620676 CHIC2Q9UKJ5 165 aa6.57□□□□□ -1.36
VPS13D-214ENST00000620676 PDE4CQ08493 712 aa6.56□□□□□ -1.36
VPS13D-214ENST00000620676 C11orf95C9JLR9 678 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-214ENST00000620676 HSP90AB1P08238 724 aaKnown RBP6.56□□□□□ -1.36
VPS13D-214ENST00000620676 FOXD4L5Q5VV16 416 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-214ENST00000620676 FOXD4L4Q8WXT5 416 aaPredicted RBP6.56□□□□□ -1.36
VPS13D-214ENST00000620676 ZNF771Q7L3S4 317 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-214ENST00000620676 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-214ENST00000620676 ZHX1Q9UKY1 873 aaPredicted RBP6.54□□□□□ -1.36
VPS13D-214ENST00000620676 TAOK2Q9UL54 1235 aa6.54□□□□□ -1.36
VPS13D-214ENST00000620676 PDE4AP27815 886 aa6.53□□□□□ -1.36
VPS13D-214ENST00000620676 PLIN1O60240 522 aa6.53□□□□□ -1.36
VPS13D-214ENST00000620676 WDR43Q15061 677 aaKnown RBP eCLIP6.52□□□□□ -1.36
VPS13D-214ENST00000620676 DRC7Q8IY82 874 aa6.52□□□□□ -1.37
VPS13D-214ENST00000620676 PTMSP20962 102 aa6.51□□□□□ -1.37
VPS13D-214ENST00000620676 GOLGA6L22H0YM25 854 aa6.51□□□□□ -1.37
VPS13D-214ENST00000620676 NEUROD2Q15784 382 aa6.51□□□□□ -1.37
VPS13D-214ENST00000620676 MPNDQ8N594 471 aa6.5□□□□□ -1.37
VPS13D-214ENST00000620676 CC2D1BQ5T0F9 858 aaKnown RBP6.5□□□□□ -1.37
VPS13D-214ENST00000620676 NFKBIBQ15653 356 aa6.5□□□□□ -1.37
VPS13D-214ENST00000620676 FRAT2O75474 233 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-214ENST00000620676 R3HCC1Q9Y3T6 440 aaKnown RBP6.5□□□□□ -1.37
VPS13D-214ENST00000620676 PLCD3Q8N3E9 789 aa6.49□□□□□ -1.37
VPS13D-214ENST00000620676 APPP05067 770 aa6.48□□□□□ -1.37
VPS13D-214ENST00000620676 TCERG1O14776 1098 aaKnown RBP6.48□□□□□ -1.37
VPS13D-214ENST00000620676 HSCBQ8IWL3 235 aa6.48□□□□□ -1.37
VPS13D-214ENST00000620676 RRP7BPQ9NSQ0 103 aa6.48□□□□□ -1.37
VPS13D-214ENST00000620676 PAXIP1Q6ZW49 1069 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-214ENST00000620676 EXOC6Q8TAG9 804 aa6.47□□□□□ -1.37
VPS13D-214ENST00000620676 E9PSI1 815 aa6.47□□□□□ -1.37
VPS13D-214ENST00000620676 CHMP4AQ9BY43 222 aa6.47□□□□□ -1.37
VPS13D-214ENST00000620676 EIF4G2P78344 907 aaKnown RBP eCLIP6.47□□□□□ -1.37
VPS13D-214ENST00000620676 MFAP1P55081 439 aaKnown RBP6.46□□□□□ -1.37
VPS13D-214ENST00000620676 RCAN3Q9UKA8 241 aa6.46□□□□□ -1.37
VPS13D-214ENST00000620676 ZNF777Q9ULD5 760 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-214ENST00000620676 FOXD4L6Q3SYB3 417 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-214ENST00000620676 FOXD4L3Q6VB84 417 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-214ENST00000620676 MYH16Q9H6N6 1097 aa6.46□□□□□ -1.38
VPS13D-214ENST00000620676 SKAP1Q86WV1 359 aa6.46□□□□□ -1.38
VPS13D-214ENST00000620676 CHAF1AQ13111 956 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-214ENST00000620676 FAM43AQ8N2R8 423 aa6.45□□□□□ -1.38
VPS13D-214ENST00000620676 CCER2I3L3R5 266 aa6.45□□□□□ -1.38
VPS13D-214ENST00000620676 AEBP1Q8IUX7 1158 aa6.45□□□□□ -1.38
VPS13D-214ENST00000620676 ZNF526Q8TF50 670 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-214ENST00000620676 NOL8Q76FK4 1167 aaKnown RBP6.44□□□□□ -1.38
VPS13D-214ENST00000620676 TRERF1Q96PN7 1200 aa6.44□□□□□ -1.38
VPS13D-214ENST00000620676 APBB1O00213 710 aa6.44□□□□□ -1.38
VPS13D-214ENST00000620676 KIAA2012Q0VF49 1180 aa6.44□□□□□ -1.38
VPS13D-214ENST00000620676 BBXQ8WY36 941 aaPredicted RBP6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms