RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 FAM69CQ0P6D2 419 aa17.69■□□□□ 0.42
RFFL-208ENST00000581039 KIF13AQ9H1H9 1805 aa17.63■□□□□ 0.41
RFFL-208ENST00000581039 ABCC10Q5T3U5 1492 aa17.61■□□□□ 0.41
RFFL-208ENST00000581039 RUSC2Q8N2Y8 1516 aa17.57■□□□□ 0.4
RFFL-208ENST00000581039 MAPKBP1O60336 1514 aa17.55■□□□□ 0.4
RFFL-208ENST00000581039 IGF1RP08069 1367 aa17.53■□□□□ 0.4
RFFL-208ENST00000581039 KIAA0586Q9BVV6 1533 aa17.53■□□□□ 0.4
RFFL-208ENST00000581039 ADCY10Q96PN6 1610 aa17.5■□□□□ 0.39
RFFL-208ENST00000581039 KIF27Q86VH2 1401 aa17.5■□□□□ 0.39
RFFL-208ENST00000581039 DIP2BQ9P265 1576 aa17.49■□□□□ 0.39
RFFL-208ENST00000581039 TTBK1Q5TCY1 1321 aaPredicted RBP17.47■□□□□ 0.39
RFFL-208ENST00000581039 PTPRGP23470 1445 aa17.47■□□□□ 0.39
RFFL-208ENST00000581039 KDM4FA0A1W2PPD8 638 aa17.46■□□□□ 0.39
RFFL-208ENST00000581039 KDM6BO15054 1643 aa17.44■□□□□ 0.38
RFFL-208ENST00000581039 CUL7Q14999 1698 aa17.42■□□□□ 0.38
RFFL-208ENST00000581039 CARMIL1Q5VZK9 1371 aa17.41■□□□□ 0.38
RFFL-208ENST00000581039 CARMIL2Q6F5E8 1435 aa17.41■□□□□ 0.38
RFFL-208ENST00000581039 TNIKQ9UKE5 1360 aa17.4■□□□□ 0.38
RFFL-208ENST00000581039 TSPOAP1O95153 1857 aa17.39■□□□□ 0.38
RFFL-208ENST00000581039 ABCC2Q92887 1545 aa17.36■□□□□ 0.37
RFFL-208ENST00000581039 PLB1Q6P1J6 1458 aa17.34■□□□□ 0.37
RFFL-208ENST00000581039 ASXL2Q76L83 1435 aa17.34■□□□□ 0.37
RFFL-208ENST00000581039 UACAQ9BZF9 1416 aa17.3■□□□□ 0.36
RFFL-208ENST00000581039 UHRF1BP1LA0JNW5 1464 aa17.29■□□□□ 0.36
RFFL-208ENST00000581039 GLI2P10070 1586 aa17.28■□□□□ 0.36
RFFL-208ENST00000581039 IQGAP2Q13576 1575 aa17.28■□□□□ 0.36
RFFL-208ENST00000581039 DISP1Q96F81 1524 aa17.24■□□□□ 0.35
RFFL-208ENST00000581039 ILDR1Q86SU0 546 aaPredicted RBP17.22■□□□□ 0.35
RFFL-208ENST00000581039 EPRSP07814 1512 aaKnown RBP17.21■□□□□ 0.35
RFFL-208ENST00000581039 KDM5BQ9UGL1 1544 aa17.21■□□□□ 0.35
RFFL-208ENST00000581039 PPRC1Q5VV67 1664 aaKnown RBP17.21■□□□□ 0.35
RFFL-208ENST00000581039 ADGRL1O94910 1474 aa17.21■□□□□ 0.35
RFFL-208ENST00000581039 COL17A1Q9UMD9 1497 aaPredicted RBP17.2■□□□□ 0.34
RFFL-208ENST00000581039 RAPGEF2Q9Y4G8 1499 aa17.2■□□□□ 0.34
RFFL-208ENST00000581039 TEX14Q8IWB6 1497 aa17.19■□□□□ 0.34
RFFL-208ENST00000581039 UGGT2Q9NYU1 1516 aa17.17■□□□□ 0.34
RFFL-208ENST00000581039 MAP3K4Q9Y6R4 1608 aa17.14■□□□□ 0.33
RFFL-208ENST00000581039 KCNH8Q96L42 1107 aa17.13■□□□□ 0.33
RFFL-208ENST00000581039 ZCCHC11Q5TAX3 1644 aaKnown RBP17.13■□□□□ 0.33
RFFL-208ENST00000581039 KIAA0556O60303 1618 aa17.11■□□□□ 0.33
RFFL-208ENST00000581039 WDR7Q9Y4E6 1490 aa17.11■□□□□ 0.33
RFFL-208ENST00000581039 CD109Q6YHK3 1445 aa17.08■□□□□ 0.32
RFFL-208ENST00000581039 GOLGA3Q08378 1498 aa17.06■□□□□ 0.32
RFFL-208ENST00000581039 FAM9AQ8IZU1 332 aaPredicted RBP17.06■□□□□ 0.32
RFFL-208ENST00000581039 HECW2Q9P2P5 1572 aa17.03■□□□□ 0.32
RFFL-208ENST00000581039 MAGI3Q5TCQ9 1506 aa17.03■□□□□ 0.32
RFFL-208ENST00000581039 ABCA8O94911 1581 aa16.98■□□□□ 0.31
RFFL-208ENST00000581039 ARID3CA6NKF2 412 aa16.98■□□□□ 0.31
RFFL-208ENST00000581039 CFAP43Q8NDM7 1665 aa16.97■□□□□ 0.31
RFFL-208ENST00000581039 CTTNBP2Q8WZ74 1663 aa16.97■□□□□ 0.31
RFFL-208ENST00000581039 P3H3Q8IVL6 736 aa16.95■□□□□ 0.3
RFFL-208ENST00000581039 PRXQ9BXM0 1461 aa16.93■□□□□ 0.3
RFFL-208ENST00000581039 ARAP3Q8WWN8 1544 aa16.91■□□□□ 0.3
RFFL-208ENST00000581039 PHLDB1Q86UU1 1377 aa16.9■□□□□ 0.3
RFFL-208ENST00000581039 ATP10BO94823 1461 aa16.9■□□□□ 0.3
RFFL-208ENST00000581039 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.89■□□□□ 0.29
RFFL-208ENST00000581039 HNRNPUL2Q1KMD3 747 aaKnown RBP16.89■□□□□ 0.29
RFFL-208ENST00000581039 RAPGEF3O95398 923 aa16.87■□□□□ 0.29
RFFL-208ENST00000581039 KIF21BO75037 1637 aa16.87■□□□□ 0.29
RFFL-208ENST00000581039 ARID4BQ4LE39 1312 aaPredicted RBP16.83■□□□□ 0.28
RFFL-208ENST00000581039 FBXO41Q8TF61 875 aa16.83■□□□□ 0.28
RFFL-208ENST00000581039 CSRNP3Q8WYN3 585 aa16.83■□□□□ 0.28
RFFL-208ENST00000581039 PTPRMP28827 1452 aa16.81■□□□□ 0.28
RFFL-208ENST00000581039 ABCA9Q8IUA7 1624 aa16.81■□□□□ 0.28
RFFL-208ENST00000581039 NEO1Q92859 1461 aa16.8■□□□□ 0.28
RFFL-208ENST00000581039 RANGAP1P46060 587 aaPredicted RBP16.79■□□□□ 0.28
RFFL-208ENST00000581039 PLEKHD1A6NEE1 506 aa16.77■□□□□ 0.28
RFFL-208ENST00000581039 ADAMTSL3P82987 1691 aa16.76■□□□□ 0.27
RFFL-208ENST00000581039 RAPGEF6Q8TEU7 1601 aa16.75■□□□□ 0.27
RFFL-208ENST00000581039 SAMD9Q5K651 1589 aa16.74■□□□□ 0.27
RFFL-208ENST00000581039 NUP153P49790 1475 aaKnown RBP16.72■□□□□ 0.27
RFFL-208ENST00000581039 DENND4BO75064 1496 aaPredicted RBP16.7■□□□□ 0.26
RFFL-208ENST00000581039 BCORL1Q5H9F3 1711 aa16.69■□□□□ 0.26
RFFL-208ENST00000581039 FHOD3Q2V2M9 1422 aa16.69■□□□□ 0.26
RFFL-208ENST00000581039 AKNAQ7Z591 1439 aa16.69■□□□□ 0.26
RFFL-208ENST00000581039 FRMPD1Q5SYB0 1578 aa16.68■□□□□ 0.26
RFFL-208ENST00000581039 PLPPR3Q6T4P5 718 aa16.68■□□□□ 0.26
RFFL-208ENST00000581039 PCF11O94913 1555 aaKnown RBP16.68■□□□□ 0.26
RFFL-208ENST00000581039 MADDQ8WXG6 1647 aa16.67■□□□□ 0.26
RFFL-208ENST00000581039 POGZQ7Z3K3 1410 aa16.66■□□□□ 0.26
RFFL-208ENST00000581039 FANCAO15360 1455 aa16.66■□□□□ 0.26
RFFL-208ENST00000581039 LMTK3Q96Q04 1460 aa16.66■□□□□ 0.26
RFFL-208ENST00000581039 HSPA2P54652 639 aa16.64■□□□□ 0.25
RFFL-208ENST00000581039 EEA1Q15075 1411 aa16.63■□□□□ 0.25
RFFL-208ENST00000581039 ARHGEF40Q8TER5 1519 aa16.63■□□□□ 0.25
RFFL-208ENST00000581039 MLECQ14165 292 aa16.62■□□□□ 0.25
RFFL-208ENST00000581039 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.6■□□□□ 0.25
RFFL-208ENST00000581039 RIMS1Q86UR5 1692 aaKnown RBP16.6■□□□□ 0.25
RFFL-208ENST00000581039 CFAP74Q9C0B2 1584 aa16.6■□□□□ 0.25
RFFL-208ENST00000581039 RICTORQ6R327 1708 aa16.59■□□□□ 0.25
RFFL-208ENST00000581039 YEATS2Q9ULM3 1422 aa16.58■□□□□ 0.24
RFFL-208ENST00000581039 MAGI2Q86UL8 1455 aa16.58■□□□□ 0.24
RFFL-208ENST00000581039 ZFYVE16Q7Z3T8 1539 aa16.58■□□□□ 0.24
RFFL-208ENST00000581039 ATP1B4Q9UN42 357 aaPredicted RBP16.57■□□□□ 0.24
RFFL-208ENST00000581039 EFCAB5A4FU69 1503 aa16.56■□□□□ 0.24
RFFL-208ENST00000581039 SCAPERQ9BY12 1400 aa16.56■□□□□ 0.24
RFFL-208ENST00000581039 ZMYM4Q5VZL5 1548 aa16.55■□□□□ 0.24
RFFL-208ENST00000581039 PLCH2O75038 1416 aa16.55■□□□□ 0.24
RFFL-208ENST00000581039 EFCAB2Q5VUJ9 269 aa16.55■□□□□ 0.24
RFFL-208ENST00000581039 CERKQ8TCT0 537 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms