RNA–Protein interactions for RNA: ENST00000580949.1

PTPRM-213, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 687 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-213ENST00000580949 SUPT5HO00267 1087 aaKnown RBP11.11□□□□□ -0.63
PTPRM-213ENST00000580949 RASEFQ8IZ41 740 aa11.1□□□□□ -0.63
PTPRM-213ENST00000580949 FAM212AQ96EL1 285 aa11.08□□□□□ -0.64
PTPRM-213ENST00000580949 C19orf67A6NJJ6 358 aa11.07□□□□□ -0.64
PTPRM-213ENST00000580949 AMER1Q5JTC6 1135 aaPredicted RBP11.07□□□□□ -0.64
PTPRM-213ENST00000580949 GSE1Q14687 1217 aa11.06□□□□□ -0.64
PTPRM-213ENST00000580949 PAK3O75914 559 aaPredicted RBP11.04□□□□□ -0.64
PTPRM-213ENST00000580949 CD44P16070 742 aaKnown RBP11.04□□□□□ -0.64
PTPRM-213ENST00000580949 DCAF8Q5TAQ9 597 aa11.04□□□□□ -0.64
PTPRM-213ENST00000580949 HAX1O00165 279 aa11.02□□□□□ -0.65
PTPRM-213ENST00000580949 TSPYL2Q9H2G4 693 aaPredicted RBP11.02□□□□□ -0.65
PTPRM-213ENST00000580949 CIZ1Q9ULV3 898 aaPredicted RBP11.02□□□□□ -0.65
PTPRM-213ENST00000580949 UNC13AQ9UPW8 1703 aa11.01□□□□□ -0.65
PTPRM-213ENST00000580949 BICRAQ9NZM4 1560 aa11□□□□□ -0.65
PTPRM-213ENST00000580949 CECR2Q9BXF3 1484 aa11□□□□□ -0.65
PTPRM-213ENST00000580949 RTN4Q9NQC3 1192 aaKnown RBP10.99□□□□□ -0.65
PTPRM-213ENST00000580949 ZRANB1Q9UGI0 708 aa10.99□□□□□ -0.65
PTPRM-213ENST00000580949 TRIM41Q8WV44 630 aa10.98□□□□□ -0.65
PTPRM-213ENST00000580949 PKD2Q13563 968 aa10.97□□□□□ -0.65
PTPRM-213ENST00000580949 CCDC61Q9Y6R9 512 aa10.97□□□□□ -0.65
PTPRM-213ENST00000580949 RSF1Q96T23 1441 aaPredicted RBP10.96□□□□□ -0.65
PTPRM-213ENST00000580949 ZNF579Q8NAF0 562 aaKnown RBP10.93□□□□□ -0.66
PTPRM-213ENST00000580949 CHRM1P11229 460 aaPredicted RBP10.92□□□□□ -0.66
PTPRM-213ENST00000580949 EVX2Q03828 476 aa10.92□□□□□ -0.66
PTPRM-213ENST00000580949 ECM2O94769 699 aaPredicted RBP10.9□□□□□ -0.66
PTPRM-213ENST00000580949 MROH2BQ7Z745 1585 aa10.9□□□□□ -0.67
PTPRM-213ENST00000580949 PYGBP11216 843 aa10.88□□□□□ -0.67
PTPRM-213ENST00000580949 PHF12Q96QT6 1004 aa10.87□□□□□ -0.67
PTPRM-213ENST00000580949 KIF12Q96FN5 646 aa10.86□□□□□ -0.67
PTPRM-213ENST00000580949 CLCN6P51797 869 aa10.84□□□□□ -0.67
PTPRM-213ENST00000580949 SGIP1Q9BQI5 828 aa10.84□□□□□ -0.67
PTPRM-213ENST00000580949 BAZ1AQ9NRL2 1556 aaPredicted RBP10.82□□□□□ -0.68
PTPRM-213ENST00000580949 MAP3K13O43283 966 aa10.81□□□□□ -0.68
PTPRM-213ENST00000580949 RGL2O15211 777 aa10.79□□□□□ -0.68
PTPRM-213ENST00000580949 ZNF467Q7Z7K2 595 aaPredicted RBP10.79□□□□□ -0.68
PTPRM-213ENST00000580949 PCDHB13Q9Y5F0 798 aa10.79□□□□□ -0.68
PTPRM-213ENST00000580949 SMARCA4P51532 1647 aa10.78□□□□□ -0.68
PTPRM-213ENST00000580949 RNF25Q96BH1 459 aaPredicted RBP10.78□□□□□ -0.68
PTPRM-213ENST00000580949 SP7Q8TDD2 431 aaPredicted RBP10.77□□□□□ -0.69
PTPRM-213ENST00000580949 WIZO95785 1651 aa10.76□□□□□ -0.69
PTPRM-213ENST00000580949 RIOK3O14730 519 aaKnown RBP10.76□□□□□ -0.69
PTPRM-213ENST00000580949 MS4A3Q96HJ5 214 aa10.76□□□□□ -0.69
PTPRM-213ENST00000580949 GABBR2O75899 941 aa10.74□□□□□ -0.69
PTPRM-213ENST00000580949 IFNL1Q8IU54 200 aa10.74□□□□□ -0.69
PTPRM-213ENST00000580949 TAOK2Q9UL54 1235 aa10.73□□□□□ -0.69
PTPRM-213ENST00000580949 PCDHB8Q9UN66 801 aa10.73□□□□□ -0.69
PTPRM-213ENST00000580949 GALR2O43603 387 aaPredicted RBP10.72□□□□□ -0.69
PTPRM-213ENST00000580949 VGFO15240 615 aaPredicted RBP10.71□□□□□ -0.69
PTPRM-213ENST00000580949 PDAP1Q13442 181 aaKnown RBP10.68□□□□□ -0.7
PTPRM-213ENST00000580949 ATAD2BQ9ULI0 1458 aa10.67□□□□□ -0.7
PTPRM-213ENST00000580949 PEG3Q9GZU2 1588 aa10.65□□□□□ -0.7
PTPRM-213ENST00000580949 PSEN1P49768 467 aa10.65□□□□□ -0.7
PTPRM-213ENST00000580949 TOP2AP11388 1531 aaKnown RBP10.64□□□□□ -0.71
PTPRM-213ENST00000580949 TIE1P35590 1138 aa10.64□□□□□ -0.71
PTPRM-213ENST00000580949 TRPC6Q9Y210 931 aa10.64□□□□□ -0.71
PTPRM-213ENST00000580949 EIF4G1Q04637 1599 aaKnown RBP10.64□□□□□ -0.71
PTPRM-213ENST00000580949 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.63□□□□□ -0.71
PTPRM-213ENST00000580949 ZFP91Q96JP5 570 aaPredicted RBP10.63□□□□□ -0.71
PTPRM-213ENST00000580949 BMP2KQ9NSY1 1161 aaPredicted RBP10.6□□□□□ -0.71
PTPRM-213ENST00000580949 CCDC88BA6NC98 1476 aa10.6□□□□□ -0.71
PTPRM-213ENST00000580949 SMARCA2P51531 1590 aa10.6□□□□□ -0.71
PTPRM-213ENST00000580949 HS6ST3Q8IZP7 471 aa10.59□□□□□ -0.71
PTPRM-213ENST00000580949 TMEM106CQ9BVX2 250 aa10.59□□□□□ -0.71
PTPRM-213ENST00000580949 TTLL13PA6NNM8 815 aa10.58□□□□□ -0.72
PTPRM-213ENST00000580949 STK25O00506 426 aa10.58□□□□□ -0.72
PTPRM-213ENST00000580949 CHGAP10645 457 aaKnown RBP10.58□□□□□ -0.72
PTPRM-213ENST00000580949 DCBLD2Q96PD2 775 aa10.58□□□□□ -0.72
PTPRM-213ENST00000580949 NCAPD3P42695 1498 aa10.57□□□□□ -0.72
PTPRM-213ENST00000580949 BAZ1BQ9UIG0 1483 aaKnown RBP10.56□□□□□ -0.72
PTPRM-213ENST00000580949 ATMINO43313 823 aaPredicted RBP10.56□□□□□ -0.72
PTPRM-213ENST00000580949 ASTLQ6HA08 431 aaPredicted RBP10.56□□□□□ -0.72
PTPRM-213ENST00000580949 BCL11BQ9C0K0 894 aaPredicted RBP10.56□□□□□ -0.72
PTPRM-213ENST00000580949 STK24Q9Y6E0 443 aa10.55□□□□□ -0.72
PTPRM-213ENST00000580949 ATN1P54259 1190 aaPredicted RBP10.52□□□□□ -0.73
PTPRM-213ENST00000580949 DNAJC5Q9H3Z4 198 aa10.52□□□□□ -0.73
PTPRM-213ENST00000580949 POTEIP0CG38 1075 aa10.51□□□□□ -0.73
PTPRM-213ENST00000580949 CABP2Q9NPB3 220 aa10.5□□□□□ -0.73
PTPRM-213ENST00000580949 TRIM35Q9UPQ4 493 aa10.5□□□□□ -0.73
PTPRM-213ENST00000580949 HMGXB3Q12766 1538 aa10.49□□□□□ -0.73
PTPRM-213ENST00000580949 CC2D2AQ9P2K1 1620 aa10.48□□□□□ -0.73
PTPRM-213ENST00000580949 GOLGA2Q08379 1002 aa10.48□□□□□ -0.73
PTPRM-213ENST00000580949 BBXQ8WY36 941 aaPredicted RBP10.47□□□□□ -0.73
PTPRM-213ENST00000580949 MKRN3Q13064 507 aaKnown RBP10.45□□□□□ -0.74
PTPRM-213ENST00000580949 PELP1Q8IZL8 1130 aaKnown RBP10.45□□□□□ -0.74
PTPRM-213ENST00000580949 EFCAB3Q8N7B9 438 aa10.45□□□□□ -0.74
PTPRM-213ENST00000580949 IER5LQ5T953 404 aa10.44□□□□□ -0.74
PTPRM-213ENST00000580949 SOX12O15370 315 aa10.43□□□□□ -0.74
PTPRM-213ENST00000580949 SLC39A7Q92504 469 aa10.43□□□□□ -0.74
PTPRM-213ENST00000580949 NKX1-1Q15270 411 aaPredicted RBP10.41□□□□□ -0.74
PTPRM-213ENST00000580949 C7P10643 843 aa10.4□□□□□ -0.74
PTPRM-213ENST00000580949 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.4□□□□□ -0.74
PTPRM-213ENST00000580949 SLC24A1O60721 1099 aa10.38□□□□□ -0.75
PTPRM-213ENST00000580949 ILDR1Q86SU0 546 aaPredicted RBP10.38□□□□□ -0.75
PTPRM-213ENST00000580949 MFRPQ9BY79 579 aa10.38□□□□□ -0.75
PTPRM-213ENST00000580949 NLRP6P59044 892 aa10.37□□□□□ -0.75
PTPRM-213ENST00000580949 IRX5P78411 483 aaPredicted RBP10.37□□□□□ -0.75
PTPRM-213ENST00000580949 RYDENQ9NUL5 291 aaKnown RBP10.37□□□□□ -0.75
PTPRM-213ENST00000580949 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.37□□□□□ -0.75
PTPRM-213ENST00000580949 METRNQ9UJH8 293 aa10.37□□□□□ -0.75
PTPRM-213ENST00000580949 PHF8Q9UPP1 1060 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms