RNA–Protein interactions for RNA: ENST00000572949.5

USP6-204, Transcript of ubiquitin specific peptidase 6, humanhuman

TSL 2

Gene USP6, Length 7,862 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6-204ENST00000572949 TAOK2Q9UL54 1235 aa12.53□□□□□ -0.4
USP6-204ENST00000572949 CHIC2Q9UKJ5 165 aa12.53□□□□□ -0.4
USP6-204ENST00000572949 PPM1GO15355 546 aaPredicted RBP12.52□□□□□ -0.4
USP6-204ENST00000572949 ISY1Q9ULR0 285 aaKnown RBP12.49□□□□□ -0.41
USP6-204ENST00000572949 HNRNPUQ00839 825 aaKnown RBP eCLIP12.48□□□□□ -0.41
USP6-204ENST00000572949 CASC1Q6TDU7 716 aa12.46□□□□□ -0.41
USP6-204ENST00000572949 TMX4Q9H1E5 349 aaPredicted RBP12.45□□□□□ -0.42
USP6-204ENST00000572949 GTF3C3Q9Y5Q9 886 aa12.45□□□□□ -0.42
USP6-204ENST00000572949 EIF4G2P78344 907 aaKnown RBP eCLIP12.44□□□□□ -0.42
USP6-204ENST00000572949 CCDC136Q96JN2 1154 aa12.44□□□□□ -0.42
USP6-204ENST00000572949 TPRNQ4KMQ1 711 aa12.44□□□□□ -0.42
USP6-204ENST00000572949 GLIPR1L2Q4G1C9 344 aa12.44□□□□□ -0.42
USP6-204ENST00000572949 CFAP53Q96M91 514 aa12.43□□□□□ -0.42
USP6-204ENST00000572949 PRM3Q9NNZ6 103 aa12.43□□□□□ -0.42
USP6-204ENST00000572949 FGD1P98174 961 aa12.42□□□□□ -0.42
USP6-204ENST00000572949 LAS1LQ9Y4W2 734 aaKnown RBP12.41□□□□□ -0.42
USP6-204ENST00000572949 OS9Q13438 667 aaPredicted RBP12.41□□□□□ -0.42
USP6-204ENST00000572949 NAP1L2Q9ULW6 460 aaPredicted RBP12.4□□□□□ -0.42
USP6-204ENST00000572949 POGKQ9P215 609 aa12.4□□□□□ -0.42
USP6-204ENST00000572949 CSRNP3Q8WYN3 585 aa12.4□□□□□ -0.42
USP6-204ENST00000572949 GOLGA6L22H0YM25 854 aa12.39□□□□□ -0.43
USP6-204ENST00000572949 KRI1Q8N9T8 703 aaKnown RBP12.39□□□□□ -0.43
USP6-204ENST00000572949 TRIM44Q96DX7 344 aaPredicted RBP12.38□□□□□ -0.43
USP6-204ENST00000572949 FKBP8Q14318 412 aa12.37□□□□□ -0.43
USP6-204ENST00000572949 MTUS2Q5JR59 1369 aa12.36□□□□□ -0.43
USP6-204ENST00000572949 FTSJ3Q8IY81 847 aaKnown RBP12.36□□□□□ -0.43
USP6-204ENST00000572949 CCDC9Q9Y3X0 531 aaKnown RBP12.36□□□□□ -0.43
USP6-204ENST00000572949 PLEKHD1A6NEE1 506 aa12.35□□□□□ -0.43
USP6-204ENST00000572949 DDX10Q13206 875 aaKnown RBP12.35□□□□□ -0.43
USP6-204ENST00000572949 KCNJ4P48050 445 aa12.35□□□□□ -0.43
USP6-204ENST00000572949 BECN1Q14457 450 aa12.35□□□□□ -0.43
USP6-204ENST00000572949 RGL3Q3MIN7 710 aa12.35□□□□□ -0.43
USP6-204ENST00000572949 PTMAP06454 111 aaKnown RBP12.34□□□□□ -0.43
USP6-204ENST00000572949 MAPK8IP3Q9UPT6 1336 aa12.33□□□□□ -0.43
USP6-204ENST00000572949 MLECQ14165 292 aa12.33□□□□□ -0.44
USP6-204ENST00000572949 MRS2Q9HD23 443 aa12.33□□□□□ -0.44
USP6-204ENST00000572949 HDGFP51858 240 aaKnown RBP12.32□□□□□ -0.44
USP6-204ENST00000572949 AEBP2Q6ZN18 517 aaPredicted RBP12.32□□□□□ -0.44
USP6-204ENST00000572949 NBR1Q14596 966 aa12.31□□□□□ -0.44
USP6-204ENST00000572949 CDCA8Q53HL2 280 aa12.31□□□□□ -0.44
USP6-204ENST00000572949 G3V3G9 751 aa12.31□□□□□ -0.44
USP6-204ENST00000572949 DCAF8Q5TAQ9 597 aa12.31□□□□□ -0.44
USP6-204ENST00000572949 GOLGA6L6A8MZA4 724 aa12.3□□□□□ -0.44
USP6-204ENST00000572949 DNTTIP2Q5QJE6 756 aaKnown RBP12.3□□□□□ -0.44
USP6-204ENST00000572949 ERCC6Q03468 1493 aa12.3□□□□□ -0.44
USP6-204ENST00000572949 KNSTRNQ9Y448 316 aa12.3□□□□□ -0.44
USP6-204ENST00000572949 NUDCQ9Y266 331 aa12.29□□□□□ -0.44
USP6-204ENST00000572949 SOX12O15370 315 aa12.29□□□□□ -0.44
USP6-204ENST00000572949 ZNF330Q9Y3S2 320 aaPredicted RBP12.26□□□□□ -0.45
USP6-204ENST00000572949 SCRIBQ14160 1630 aa12.25□□□□□ -0.45
USP6-204ENST00000572949 PLCB2Q00722 1185 aa12.25□□□□□ -0.45
USP6-204ENST00000572949 NEUROD2Q15784 382 aa12.25□□□□□ -0.45
USP6-204ENST00000572949 ANP32EQ9BTT0 268 aa12.25□□□□□ -0.45
USP6-204ENST00000572949 NRDCO43847 1150 aa12.24□□□□□ -0.45
USP6-204ENST00000572949 RRP7BPQ9NSQ0 103 aa12.24□□□□□ -0.45
USP6-204ENST00000572949 CSB-PGBD3P0DP91 1061 aa12.24□□□□□ -0.45
USP6-204ENST00000572949 PNNQ9H307 717 aaKnown RBP12.24□□□□□ -0.45
USP6-204ENST00000572949 DCAF8L1A6NGE4 600 aa12.24□□□□□ -0.45
USP6-204ENST00000572949 GNL2Q13823 731 aaKnown RBP12.24□□□□□ -0.45
USP6-204ENST00000572949 TNNT2P45379 298 aaPredicted RBP12.23□□□□□ -0.45
USP6-204ENST00000572949 PAK3O75914 559 aaPredicted RBP12.23□□□□□ -0.45
USP6-204ENST00000572949 U2SURPO15042 1029 aaKnown RBP12.22□□□□□ -0.45
USP6-204ENST00000572949 KIAA2012Q0VF49 1180 aa12.22□□□□□ -0.45
USP6-204ENST00000572949 CHMP4BQ9H444 224 aaKnown RBP12.21□□□□□ -0.45
USP6-204ENST00000572949 DDRGK1Q96HY6 314 aa12.21□□□□□ -0.46
USP6-204ENST00000572949 GOLGA6L4A6NEF3 574 aa12.2□□□□□ -0.46
USP6-204ENST00000572949 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.2□□□□□ -0.46
USP6-204ENST00000572949 L1TD1Q5T7N2 865 aaKnown RBP12.2□□□□□ -0.46
USP6-204ENST00000572949 RTF1Q92541 710 aaKnown RBP12.19□□□□□ -0.46
USP6-204ENST00000572949 CHAF1AQ13111 956 aaPredicted RBP12.18□□□□□ -0.46
USP6-204ENST00000572949 CFDP1Q9UEE9 299 aaPredicted RBP12.18□□□□□ -0.46
USP6-204ENST00000572949 PHF23Q9BUL5 403 aaPredicted RBP12.16□□□□□ -0.46
USP6-204ENST00000572949 SRPK2P78362 688 aaKnown RBP12.16□□□□□ -0.46
USP6-204ENST00000572949 NOC3LQ8WTT2 800 aaKnown RBP12.16□□□□□ -0.46
USP6-204ENST00000572949 KANK1Q14678 1352 aa12.15□□□□□ -0.46
USP6-204ENST00000572949 IRX6P78412 446 aaPredicted RBP12.15□□□□□ -0.46
USP6-204ENST00000572949 RSF1Q96T23 1441 aaPredicted RBP12.15□□□□□ -0.46
USP6-204ENST00000572949 FRAT1Q92837 279 aaPredicted RBP12.14□□□□□ -0.47
USP6-204ENST00000572949 HIRIP3Q9BW71 556 aaPredicted RBP12.13□□□□□ -0.47
USP6-204ENST00000572949 HSP90AB1P08238 724 aaKnown RBP12.13□□□□□ -0.47
USP6-204ENST00000572949 MSH5O43196 834 aa12.13□□□□□ -0.47
USP6-204ENST00000572949 TAF7LQ5H9L4 462 aa12.13□□□□□ -0.47
USP6-204ENST00000572949 ACIN1Q9UKV3 1341 aaKnown RBP12.12□□□□□ -0.47
USP6-204ENST00000572949 CNKSR2Q8WXI2 1034 aa12.12□□□□□ -0.47
USP6-204ENST00000572949 CARD11Q9BXL7 1154 aa12.12□□□□□ -0.47
USP6-204ENST00000572949 GTF2E1P29083 439 aaPredicted RBP12.12□□□□□ -0.47
USP6-204ENST00000572949 MS4A1P11836 297 aa12.12□□□□□ -0.47
USP6-204ENST00000572949 MCCP23508 829 aa12.12□□□□□ -0.47
USP6-204ENST00000572949 GORABQ5T7V8 394 aa12.11□□□□□ -0.47
USP6-204ENST00000572949 MEX3CQ5U5Q3 659 aaKnown RBP12.11□□□□□ -0.47
USP6-204ENST00000572949 PDE4CQ08493 712 aa12.11□□□□□ -0.47
USP6-204ENST00000572949 SAFB2Q14151 953 aaKnown RBP eCLIP12.1□□□□□ -0.47
USP6-204ENST00000572949 VPS53Q5VIR6 699 aa12.1□□□□□ -0.47
USP6-204ENST00000572949 CHMP3Q9Y3E7 222 aa12.1□□□□□ -0.47
USP6-204ENST00000572949 SENP3-EIF4A1A0A087X0R7 540 aa12.09□□□□□ -0.47
USP6-204ENST00000572949 FRAT2O75474 233 aaPredicted RBP12.09□□□□□ -0.47
USP6-204ENST00000572949 DRC7Q8IY82 874 aa12.09□□□□□ -0.47
USP6-204ENST00000572949 AMER1Q5JTC6 1135 aaPredicted RBP12.08□□□□□ -0.47
USP6-204ENST00000572949 KIAA1211Q6ZU35 1233 aa12.07□□□□□ -0.48
USP6-204ENST00000572949 STK26Q9P289 416 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms