RNA–Protein interactions for RNA: ENST00000569603.1

LINC00556-201, long intergenic non-protein coding RNA 556, humanhuman

BASIC

Gene LINC00556, Length 412 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00556-201ENST00000569603 PHF12Q96QT6 1004 aa12.85□□□□□ -0.35
LINC00556-201ENST00000569603 NPM1P06748 294 aaKnown RBP eCLIP12.84□□□□□ -0.35
LINC00556-201ENST00000569603 PAK3O75914 559 aaPredicted RBP12.82□□□□□ -0.36
LINC00556-201ENST00000569603 DCBLD2Q96PD2 775 aa12.82□□□□□ -0.36
LINC00556-201ENST00000569603 SHROOM4Q9ULL8 1493 aa12.72□□□□□ -0.37
LINC00556-201ENST00000569603 MS4A3Q96HJ5 214 aa12.68□□□□□ -0.38
LINC00556-201ENST00000569603 TSPYL2Q9H2G4 693 aaPredicted RBP12.68□□□□□ -0.38
LINC00556-201ENST00000569603 MIER1Q8N108 512 aa12.65□□□□□ -0.38
LINC00556-201ENST00000569603 FKBP8Q14318 412 aa12.64□□□□□ -0.39
LINC00556-201ENST00000569603 CCDC61Q9Y6R9 512 aa12.63□□□□□ -0.39
LINC00556-201ENST00000569603 PELP1Q8IZL8 1130 aaKnown RBP12.62□□□□□ -0.39
LINC00556-201ENST00000569603 SCRIBQ14160 1630 aa12.62□□□□□ -0.39
LINC00556-201ENST00000569603 RASEFQ8IZ41 740 aa12.59□□□□□ -0.39
LINC00556-201ENST00000569603 POTEB2H3BUK9 544 aa12.57□□□□□ -0.4
LINC00556-201ENST00000569603 PLEKHG5O94827 1062 aa12.57□□□□□ -0.4
LINC00556-201ENST00000569603 PLCD3Q8N3E9 789 aa12.55□□□□□ -0.4
LINC00556-201ENST00000569603 KIF12Q96FN5 646 aa12.55□□□□□ -0.4
LINC00556-201ENST00000569603 CC2D2AQ9P2K1 1620 aa12.55□□□□□ -0.4
LINC00556-201ENST00000569603 ASTLQ6HA08 431 aaPredicted RBP12.54□□□□□ -0.4
LINC00556-201ENST00000569603 EIF4G1Q04637 1599 aaKnown RBP12.53□□□□□ -0.4
LINC00556-201ENST00000569603 ATMINO43313 823 aaPredicted RBP12.53□□□□□ -0.4
LINC00556-201ENST00000569603 TRPC6Q9Y210 931 aa12.49□□□□□ -0.41
LINC00556-201ENST00000569603 CECR2Q9BXF3 1484 aa12.48□□□□□ -0.41
LINC00556-201ENST00000569603 MAP3K13O43283 966 aa12.48□□□□□ -0.41
LINC00556-201ENST00000569603 OTUD5Q96G74 571 aa12.48□□□□□ -0.41
LINC00556-201ENST00000569603 PLSCR2Q9NRY7 297 aa12.48□□□□□ -0.41
LINC00556-201ENST00000569603 METRNQ9UJH8 293 aa12.47□□□□□ -0.41
LINC00556-201ENST00000569603 NUBP1P53384 320 aa12.46□□□□□ -0.41
LINC00556-201ENST00000569603 ATN1P54259 1190 aaPredicted RBP12.45□□□□□ -0.42
LINC00556-201ENST00000569603 SLC39A7Q92504 469 aa12.43□□□□□ -0.42
LINC00556-201ENST00000569603 BMP2KQ9NSY1 1161 aaPredicted RBP12.43□□□□□ -0.42
LINC00556-201ENST00000569603 ZBTB47Q9UFB7 747 aaPredicted RBP12.41□□□□□ -0.42
LINC00556-201ENST00000569603 C7P10643 843 aa12.4□□□□□ -0.42
LINC00556-201ENST00000569603 POTEJP0CG39 1038 aa12.38□□□□□ -0.43
LINC00556-201ENST00000569603 TIE1P35590 1138 aa12.36□□□□□ -0.43
LINC00556-201ENST00000569603 POTEFA5A3E0 1075 aa12.34□□□□□ -0.43
LINC00556-201ENST00000569603 PCDHB13Q9Y5F0 798 aa12.33□□□□□ -0.44
LINC00556-201ENST00000569603 TTLL13PA6NNM8 815 aa12.32□□□□□ -0.44
LINC00556-201ENST00000569603 FAM212AQ96EL1 285 aa12.32□□□□□ -0.44
LINC00556-201ENST00000569603 IFNL1Q8IU54 200 aa12.29□□□□□ -0.44
LINC00556-201ENST00000569603 SGIP1Q9BQI5 828 aa12.29□□□□□ -0.44
LINC00556-201ENST00000569603 FBXO3Q9UK99 471 aa12.29□□□□□ -0.44
LINC00556-201ENST00000569603 COLQQ9Y215 455 aaPredicted RBP12.25□□□□□ -0.45
LINC00556-201ENST00000569603 TRIM35Q9UPQ4 493 aa12.24□□□□□ -0.45
LINC00556-201ENST00000569603 VASPP50552 380 aaPredicted RBP12.23□□□□□ -0.45
LINC00556-201ENST00000569603 MAMSTRQ6ZN01 415 aa12.22□□□□□ -0.45
LINC00556-201ENST00000569603 POTEMA6NI47 508 aa12.21□□□□□ -0.45
LINC00556-201ENST00000569603 DCAF8Q5TAQ9 597 aa12.21□□□□□ -0.45
LINC00556-201ENST00000569603 PYGBP11216 843 aa12.2□□□□□ -0.46
LINC00556-201ENST00000569603 TMEM106CQ9BVX2 250 aa12.18□□□□□ -0.46
LINC00556-201ENST00000569603 POTEGQ6S5H5 508 aa12.17□□□□□ -0.46
LINC00556-201ENST00000569603 SCUBE2Q9NQ36 999 aa12.17□□□□□ -0.46
LINC00556-201ENST00000569603 NCAPD3P42695 1498 aa12.16□□□□□ -0.46
LINC00556-201ENST00000569603 SEC24BO95487 1268 aa12.16□□□□□ -0.46
LINC00556-201ENST00000569603 IER5LQ5T953 404 aa12.16□□□□□ -0.46
LINC00556-201ENST00000569603 KLHL34Q8N239 644 aa12.15□□□□□ -0.46
LINC00556-201ENST00000569603 PCDH10Q9P2E7 1040 aa12.15□□□□□ -0.46
LINC00556-201ENST00000569603 PCDHB8Q9UN66 801 aa12.12□□□□□ -0.47
LINC00556-201ENST00000569603 ATAD2BQ9ULI0 1458 aa12.11□□□□□ -0.47
LINC00556-201ENST00000569603 LCE2DQ5TA82 110 aaPredicted RBP12.11□□□□□ -0.47
LINC00556-201ENST00000569603 SMARCA4P51532 1647 aa12.09□□□□□ -0.47
LINC00556-201ENST00000569603 HMGXB3Q12766 1538 aa12.06□□□□□ -0.48
LINC00556-201ENST00000569603 IRX5P78411 483 aaPredicted RBP12.06□□□□□ -0.48
LINC00556-201ENST00000569603 GSE1Q14687 1217 aa12.05□□□□□ -0.48
LINC00556-201ENST00000569603 SMARCA2P51531 1590 aa12.05□□□□□ -0.48
LINC00556-201ENST00000569603 PEG3Q9GZU2 1588 aa12.05□□□□□ -0.48
LINC00556-201ENST00000569603 PLCG2P16885 1265 aa12.04□□□□□ -0.48
LINC00556-201ENST00000569603 IFNLR1Q8IU57 520 aaPredicted RBP12.03□□□□□ -0.48
LINC00556-201ENST00000569603 FAM163AQ96GL9 167 aaPredicted RBP12.02□□□□□ -0.49
LINC00556-201ENST00000569603 BAZ1AQ9NRL2 1556 aaPredicted RBP12.01□□□□□ -0.49
LINC00556-201ENST00000569603 ZNF467Q7Z7K2 595 aaPredicted RBP11.98□□□□□ -0.49
LINC00556-201ENST00000569603 CUX2O14529 1486 aa11.96□□□□□ -0.49
LINC00556-201ENST00000569603 CHRM1P11229 460 aaPredicted RBP11.96□□□□□ -0.49
LINC00556-201ENST00000569603 OCEL1Q9H607 264 aa11.96□□□□□ -0.49
LINC00556-201ENST00000569603 SPOCK2Q92563 424 aa11.95□□□□□ -0.5
LINC00556-201ENST00000569603 MROH2BQ7Z745 1585 aa11.95□□□□□ -0.5
LINC00556-201ENST00000569603 SLAIN1Q8ND83 568 aa11.94□□□□□ -0.5
LINC00556-201ENST00000569603 DNAJC5Q9H3Z4 198 aa11.94□□□□□ -0.5
LINC00556-201ENST00000569603 BAZ1BQ9UIG0 1483 aaKnown RBP11.93□□□□□ -0.5
LINC00556-201ENST00000569603 NESP48681 1621 aa11.93□□□□□ -0.5
LINC00556-201ENST00000569603 PSEN1P49768 467 aa11.9□□□□□ -0.5
LINC00556-201ENST00000569603 CIZ1Q9ULV3 898 aaPredicted RBP11.9□□□□□ -0.5
LINC00556-201ENST00000569603 PDCD7Q8N8D1 485 aaKnown RBP11.89□□□□□ -0.51
LINC00556-201ENST00000569603 ERCC6Q03468 1493 aa11.89□□□□□ -0.51
LINC00556-201ENST00000569603 THOC2Q8NI27 1593 aaKnown RBP11.85□□□□□ -0.51
LINC00556-201ENST00000569603 LAMC3Q9Y6N6 1575 aa11.84□□□□□ -0.51
LINC00556-201ENST00000569603 GOLGA2Q08379 1002 aa11.84□□□□□ -0.51
LINC00556-201ENST00000569603 MKRN3Q13064 507 aaKnown RBP11.84□□□□□ -0.51
LINC00556-201ENST00000569603 PDAP1Q13442 181 aaKnown RBP11.84□□□□□ -0.51
LINC00556-201ENST00000569603 ST18O60284 1047 aa11.83□□□□□ -0.52
LINC00556-201ENST00000569603 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.81□□□□□ -0.52
LINC00556-201ENST00000569603 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.8□□□□□ -0.52
LINC00556-201ENST00000569603 WIZO95785 1651 aa11.78□□□□□ -0.52
LINC00556-201ENST00000569603 KIF21AQ7Z4S6 1674 aa11.78□□□□□ -0.52
LINC00556-201ENST00000569603 ILDR1Q86SU0 546 aaPredicted RBP11.77□□□□□ -0.53
LINC00556-201ENST00000569603 CABP2Q9NPB3 220 aa11.77□□□□□ -0.53
LINC00556-201ENST00000569603 DPY19L2Q6NUT2 758 aa11.75□□□□□ -0.53
LINC00556-201ENST00000569603 C3orf67Q6ZVT6 689 aa11.74□□□□□ -0.53
LINC00556-201ENST00000569603 CADPSQ9ULU8 1353 aa11.74□□□□□ -0.53
LINC00556-201ENST00000569603 CDAN1Q8IWY9 1227 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms