RNA–Protein interactions for RNA: ENST00000566136.1

UBFD1-205, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 2

Gene UBFD1, Length 2,485 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-205ENST00000566136 SMARCA2P51531 1590 aa16.9■□□□□ 0.3
UBFD1-205ENST00000566136 BAZ1AQ9NRL2 1556 aaPredicted RBP16.89■□□□□ 0.29
UBFD1-205ENST00000566136 ECM2O94769 699 aaPredicted RBP16.86■□□□□ 0.29
UBFD1-205ENST00000566136 HMGXB3Q12766 1538 aa16.85■□□□□ 0.29
UBFD1-205ENST00000566136 MAPK8IP2Q13387 824 aaPredicted RBP16.82■□□□□ 0.28
UBFD1-205ENST00000566136 MROH2BQ7Z745 1585 aa16.82■□□□□ 0.28
UBFD1-205ENST00000566136 ARID3CA6NKF2 412 aa16.81■□□□□ 0.28
UBFD1-205ENST00000566136 BAZ1BQ9UIG0 1483 aaKnown RBP16.81■□□□□ 0.28
UBFD1-205ENST00000566136 CCDC9Q9Y3X0 531 aaKnown RBP16.77■□□□□ 0.28
UBFD1-205ENST00000566136 PEG3Q9GZU2 1588 aa16.77■□□□□ 0.27
UBFD1-205ENST00000566136 CHMP4AQ9BY43 222 aa16.76■□□□□ 0.27
UBFD1-205ENST00000566136 ERCC6Q03468 1493 aa16.75■□□□□ 0.27
UBFD1-205ENST00000566136 NESP48681 1621 aa16.74■□□□□ 0.27
UBFD1-205ENST00000566136 MYCNP04198 464 aaPredicted RBP16.74■□□□□ 0.27
UBFD1-205ENST00000566136 ZNF428Q96B54 188 aa16.73■□□□□ 0.27
UBFD1-205ENST00000566136 CHGAP10645 457 aaKnown RBP16.73■□□□□ 0.27
UBFD1-205ENST00000566136 NEUROD2Q15784 382 aa16.7■□□□□ 0.26
UBFD1-205ENST00000566136 CUX2O14529 1486 aa16.64■□□□□ 0.25
UBFD1-205ENST00000566136 WIZO95785 1651 aa16.62■□□□□ 0.25
UBFD1-205ENST00000566136 SAMD1Q6SPF0 538 aaPredicted RBP16.6■□□□□ 0.25
UBFD1-205ENST00000566136 ZBTB7CA1YPR0 619 aa16.57■□□□□ 0.24
UBFD1-205ENST00000566136 ZMYND15Q9H091 742 aa16.57■□□□□ 0.24
UBFD1-205ENST00000566136 LAMC3Q9Y6N6 1575 aa16.57■□□□□ 0.24
UBFD1-205ENST00000566136 CDK11BP21127 795 aaKnown RBP16.55■□□□□ 0.24
UBFD1-205ENST00000566136 CDK11AQ9UQ88 783 aaPredicted RBP16.55■□□□□ 0.24
UBFD1-205ENST00000566136 DHX37Q8IY37 1157 aaKnown RBP16.54■□□□□ 0.24
UBFD1-205ENST00000566136 SPDYE4A6NLX3 237 aa16.53■□□□□ 0.24
UBFD1-205ENST00000566136 LMOD2Q6P5Q4 547 aa16.52■□□□□ 0.24
UBFD1-205ENST00000566136 RSF1Q96T23 1441 aaPredicted RBP16.51■□□□□ 0.23
UBFD1-205ENST00000566136 RSPH6AQ9H0K4 717 aa16.5■□□□□ 0.23
UBFD1-205ENST00000566136 CADPSQ9ULU8 1353 aa16.49■□□□□ 0.23
UBFD1-205ENST00000566136 THOC2Q8NI27 1593 aaKnown RBP16.49■□□□□ 0.23
UBFD1-205ENST00000566136 PDS5BQ9NTI5 1447 aa16.49■□□□□ 0.23
UBFD1-205ENST00000566136 KIF21AQ7Z4S6 1674 aa16.49■□□□□ 0.23
UBFD1-205ENST00000566136 PDIA4P13667 645 aaKnown RBP16.48■□□□□ 0.23
UBFD1-205ENST00000566136 SLC24A3Q9HC58 644 aa16.45■□□□□ 0.22
UBFD1-205ENST00000566136 APBB1O00213 710 aa16.41■□□□□ 0.22
UBFD1-205ENST00000566136 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.41■□□□□ 0.22
UBFD1-205ENST00000566136 KCTD17Q8N5Z5 321 aa16.41■□□□□ 0.22
UBFD1-205ENST00000566136 FOXD4L5Q5VV16 416 aaPredicted RBP16.41■□□□□ 0.22
UBFD1-205ENST00000566136 FOXD4L4Q8WXT5 416 aaPredicted RBP16.41■□□□□ 0.22
UBFD1-205ENST00000566136 RAD21O60216 631 aa16.39■□□□□ 0.21
UBFD1-205ENST00000566136 TOP2AP11388 1531 aaKnown RBP16.38■□□□□ 0.21
UBFD1-205ENST00000566136 RNF216Q9NWF9 866 aaPredicted RBP16.36■□□□□ 0.21
UBFD1-205ENST00000566136 MTMR7Q9Y216 660 aa16.36■□□□□ 0.21
UBFD1-205ENST00000566136 MRC2Q9UBG0 1479 aa16.34■□□□□ 0.21
UBFD1-205ENST00000566136 NKX1-1Q15270 411 aaPredicted RBP16.34■□□□□ 0.21
UBFD1-205ENST00000566136 PROM2Q8N271 834 aa16.34■□□□□ 0.21
UBFD1-205ENST00000566136 CFTRP13569 1480 aa16.32■□□□□ 0.2
UBFD1-205ENST00000566136 FANCD2Q9BXW9 1451 aa16.31■□□□□ 0.2
UBFD1-205ENST00000566136 CEP164Q9UPV0 1460 aa16.31■□□□□ 0.2
UBFD1-205ENST00000566136 RBM25P49756 843 aaKnown RBP16.29■□□□□ 0.2
UBFD1-205ENST00000566136 WDR62O43379 1518 aa16.28■□□□□ 0.2
UBFD1-205ENST00000566136 SCAF1Q9H7N4 1312 aaKnown RBP16.27■□□□□ 0.2
UBFD1-205ENST00000566136 GPBP1L1Q9HC44 474 aaPredicted RBP16.26■□□□□ 0.19
UBFD1-205ENST00000566136 TRIM41Q8WV44 630 aa16.25■□□□□ 0.19
UBFD1-205ENST00000566136 HSP90B1P14625 803 aaKnown RBP16.24■□□□□ 0.19
UBFD1-205ENST00000566136 RGS22Q8NE09 1264 aa16.24■□□□□ 0.19
UBFD1-205ENST00000566136 CCDC88BA6NC98 1476 aa16.23■□□□□ 0.19
UBFD1-205ENST00000566136 SPOCK2Q92563 424 aa16.22■□□□□ 0.19
UBFD1-205ENST00000566136 ZC3H15Q8WU90 426 aaKnown RBP16.21■□□□□ 0.19
UBFD1-205ENST00000566136 AEBP1Q8IUX7 1158 aa16.2■□□□□ 0.18
UBFD1-205ENST00000566136 IL27Q8NEV9 243 aa16.19■□□□□ 0.18
UBFD1-205ENST00000566136 CCDC82Q8N4S0 544 aa16.18■□□□□ 0.18
UBFD1-205ENST00000566136 URB2Q14146 1524 aaKnown RBP16.18■□□□□ 0.18
UBFD1-205ENST00000566136 MKRN3Q13064 507 aaKnown RBP16.17■□□□□ 0.18
UBFD1-205ENST00000566136 KCNV2Q8TDN2 545 aa16.17■□□□□ 0.18
UBFD1-205ENST00000566136 MKRN4PQ13434 485 aaPredicted RBP16.14■□□□□ 0.17
UBFD1-205ENST00000566136 PRDM2Q13029 1718 aa16.12■□□□□ 0.17
UBFD1-205ENST00000566136 GTPBP6O43824 516 aaPredicted RBP16.11■□□□□ 0.17
UBFD1-205ENST00000566136 PUS7Q96PZ0 661 aaKnown RBP16.06■□□□□ 0.16
UBFD1-205ENST00000566136 FAM9AQ8IZU1 332 aaPredicted RBP16.05■□□□□ 0.16
UBFD1-205ENST00000566136 RNF25Q96BH1 459 aaPredicted RBP16.05■□□□□ 0.16
UBFD1-205ENST00000566136 POLR3GLQ9BT43 218 aa16.04■□□□□ 0.16
UBFD1-205ENST00000566136 HS6ST3Q8IZP7 471 aa16.03■□□□□ 0.16
UBFD1-205ENST00000566136 PCGF6Q9BYE7 350 aa16.03■□□□□ 0.16
UBFD1-205ENST00000566136 TOPBP1Q92547 1522 aa16.01■□□□□ 0.15
UBFD1-205ENST00000566136 USP35Q9P2H5 1018 aa16■□□□□ 0.15
UBFD1-205ENST00000566136 CIZ1Q9ULV3 898 aaPredicted RBP15.99■□□□□ 0.15
UBFD1-205ENST00000566136 UBE2Q2Q8WVN8 375 aa15.97■□□□□ 0.15
UBFD1-205ENST00000566136 ZNF608Q9ULD9 1512 aaPredicted RBP15.97■□□□□ 0.15
UBFD1-205ENST00000566136 IFT140Q96RY7 1462 aa15.96■□□□□ 0.15
UBFD1-205ENST00000566136 MFAP1P55081 439 aaKnown RBP15.96■□□□□ 0.15
UBFD1-205ENST00000566136 OSCARQ8IYS5 282 aa15.95■□□□□ 0.14
UBFD1-205ENST00000566136 ABCC8Q09428 1581 aa15.94■□□□□ 0.14
UBFD1-205ENST00000566136 DNMBPQ6XZF7 1577 aa15.94■□□□□ 0.14
UBFD1-205ENST00000566136 HMGB1P09429 215 aaKnown RBP15.94■□□□□ 0.14
UBFD1-205ENST00000566136 CLUAP1Q96AJ1 413 aa15.91■□□□□ 0.14
UBFD1-205ENST00000566136 GZF1Q9H116 711 aaPredicted RBP15.91■□□□□ 0.14
UBFD1-205ENST00000566136 BRD2P25440 801 aaKnown RBP15.91■□□□□ 0.14
UBFD1-205ENST00000566136 TMCO4Q5TGY1 634 aa15.89■□□□□ 0.13
UBFD1-205ENST00000566136 ZNF692Q9BU19 519 aaPredicted RBP15.87■□□□□ 0.13
UBFD1-205ENST00000566136 POLA1P09884 1462 aaPredicted RBP15.86■□□□□ 0.13
UBFD1-205ENST00000566136 EIF4G3O43432 1585 aaKnown RBP15.86■□□□□ 0.13
UBFD1-205ENST00000566136 TARBP1Q13395 1621 aaKnown RBP15.85■□□□□ 0.13
UBFD1-205ENST00000566136 AQRO60306 1485 aaKnown RBP eCLIP15.85■□□□□ 0.13
UBFD1-205ENST00000566136 WDR70Q9NW82 654 aa15.84■□□□□ 0.13
UBFD1-205ENST00000566136 RAD54L2Q9Y4B4 1467 aa15.83■□□□□ 0.12
UBFD1-205ENST00000566136 FAM177A1Q8N128 213 aaPredicted RBP15.82■□□□□ 0.12
UBFD1-205ENST00000566136 CADPS2Q86UW7 1296 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms