RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ATMINO43313 823 aaPredicted RBP14.07□□□□□ -0.16
VPS35-205ENST00000563984 NPM1P06748 294 aaKnown RBP eCLIP14.07□□□□□ -0.16
VPS35-205ENST00000563984 MS4A3Q96HJ5 214 aa14.07□□□□□ -0.16
VPS35-205ENST00000563984 LCE2DQ5TA82 110 aaPredicted RBP14.06□□□□□ -0.16
VPS35-205ENST00000563984 C7P10643 843 aa14.05□□□□□ -0.16
VPS35-205ENST00000563984 SLC39A7Q92504 469 aa14.05□□□□□ -0.16
VPS35-205ENST00000563984 SPDYE4A6NLX3 237 aa14□□□□□ -0.17
VPS35-205ENST00000563984 MAMSTRQ6ZN01 415 aa13.99□□□□□ -0.17
VPS35-205ENST00000563984 FAM163AQ96GL9 167 aaPredicted RBP13.95□□□□□ -0.18
VPS35-205ENST00000563984 ATN1P54259 1190 aaPredicted RBP13.91□□□□□ -0.18
VPS35-205ENST00000563984 POTEFA5A3E0 1075 aa13.88□□□□□ -0.19
VPS35-205ENST00000563984 SCUBE2Q9NQ36 999 aa13.88□□□□□ -0.19
VPS35-205ENST00000563984 TSPYL2Q9H2G4 693 aaPredicted RBP13.84□□□□□ -0.19
VPS35-205ENST00000563984 CCDC61Q9Y6R9 512 aa13.83□□□□□ -0.2
VPS35-205ENST00000563984 KIF12Q96FN5 646 aa13.79□□□□□ -0.2
VPS35-205ENST00000563984 BMP2KQ9NSY1 1161 aaPredicted RBP13.79□□□□□ -0.2
VPS35-205ENST00000563984 TRPC6Q9Y210 931 aa13.78□□□□□ -0.2
VPS35-205ENST00000563984 CDAN1Q8IWY9 1227 aa13.7□□□□□ -0.22
VPS35-205ENST00000563984 TIE1P35590 1138 aa13.68□□□□□ -0.22
VPS35-205ENST00000563984 COLQQ9Y215 455 aaPredicted RBP13.68□□□□□ -0.22
VPS35-205ENST00000563984 MAP3K13O43283 966 aa13.67□□□□□ -0.22
VPS35-205ENST00000563984 TTLL13PA6NNM8 815 aa13.61□□□□□ -0.23
VPS35-205ENST00000563984 PROM2Q8N271 834 aa13.61□□□□□ -0.23
VPS35-205ENST00000563984 SEC24BO95487 1268 aa13.59□□□□□ -0.23
VPS35-205ENST00000563984 RASEFQ8IZ41 740 aa13.56□□□□□ -0.24
VPS35-205ENST00000563984 ST18O60284 1047 aa13.53□□□□□ -0.24
VPS35-205ENST00000563984 IER5LQ5T953 404 aa13.51□□□□□ -0.25
VPS35-205ENST00000563984 TRIM35Q9UPQ4 493 aa13.51□□□□□ -0.25
VPS35-205ENST00000563984 SLAIN1Q8ND83 568 aa13.48□□□□□ -0.25
VPS35-205ENST00000563984 SGIP1Q9BQI5 828 aa13.44□□□□□ -0.26
VPS35-205ENST00000563984 MMRN1Q13201 1228 aa13.42□□□□□ -0.26
VPS35-205ENST00000563984 MIER1Q8N108 512 aa13.42□□□□□ -0.26
VPS35-205ENST00000563984 PCDHB13Q9Y5F0 798 aa13.41□□□□□ -0.26
VPS35-205ENST00000563984 PLEKHG5O94827 1062 aa13.39□□□□□ -0.27
VPS35-205ENST00000563984 SPNS2Q8IVW8 549 aa13.39□□□□□ -0.27
VPS35-205ENST00000563984 IFNL1Q8IU54 200 aa13.35□□□□□ -0.27
VPS35-205ENST00000563984 PLCG2P16885 1265 aa13.31□□□□□ -0.28
VPS35-205ENST00000563984 IRX5P78411 483 aaPredicted RBP13.31□□□□□ -0.28
VPS35-205ENST00000563984 TMEM106CQ9BVX2 250 aa13.31□□□□□ -0.28
VPS35-205ENST00000563984 NUBP1P53384 320 aa13.29□□□□□ -0.28
VPS35-205ENST00000563984 FKBP8Q14318 412 aa13.29□□□□□ -0.28
VPS35-205ENST00000563984 TMEM121BQ9BXQ6 578 aaPredicted RBP13.29□□□□□ -0.28
VPS35-205ENST00000563984 MARVELD3Q96A59 401 aa13.23□□□□□ -0.29
VPS35-205ENST00000563984 PLCD3Q8N3E9 789 aa13.22□□□□□ -0.29
VPS35-205ENST00000563984 OCEL1Q9H607 264 aa13.2□□□□□ -0.3
VPS35-205ENST00000563984 SNPHO15079 494 aa13.19□□□□□ -0.3
VPS35-205ENST00000563984 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.16□□□□□ -0.3
VPS35-205ENST00000563984 FAM212AQ96EL1 285 aa13.13□□□□□ -0.31
VPS35-205ENST00000563984 ZBTB47Q9UFB7 747 aaPredicted RBP13.13□□□□□ -0.31
VPS35-205ENST00000563984 POTEB3A0JP26 581 aa13.07□□□□□ -0.32
VPS35-205ENST00000563984 POTEBQ6S5H4 581 aa13.07□□□□□ -0.32
VPS35-205ENST00000563984 KRTAP3-3Q9BYR6 98 aa13.07□□□□□ -0.32
VPS35-205ENST00000563984 KRTAP3-2Q9BYR7 98 aa13.07□□□□□ -0.32
VPS35-205ENST00000563984 EMP3P54852 163 aa13.03□□□□□ -0.32
VPS35-205ENST00000563984 PYGBP11216 843 aa13.01□□□□□ -0.33
VPS35-205ENST00000563984 PDCD7Q8N8D1 485 aaKnown RBP13.01□□□□□ -0.33
VPS35-205ENST00000563984 HS3ST6Q96QI5 342 aa13.01□□□□□ -0.33
VPS35-205ENST00000563984 PCDHB8Q9UN66 801 aa13.01□□□□□ -0.33
VPS35-205ENST00000563984 FAM205CA6NFA0 338 aa12.97□□□□□ -0.33
VPS35-205ENST00000563984 DCAF8Q5TAQ9 597 aa12.96□□□□□ -0.33
VPS35-205ENST00000563984 C3orf67Q6ZVT6 689 aa12.94□□□□□ -0.34
VPS35-205ENST00000563984 FBXO3Q9UK99 471 aa12.94□□□□□ -0.34
VPS35-205ENST00000563984 L3MBTL3Q96JM7 780 aaPredicted RBP12.91□□□□□ -0.34
VPS35-205ENST00000563984 MKRN3Q13064 507 aaKnown RBP12.85□□□□□ -0.35
VPS35-205ENST00000563984 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.82□□□□□ -0.36
VPS35-205ENST00000563984 HOXB3P14651 431 aaPredicted RBP12.79□□□□□ -0.36
VPS35-205ENST00000563984 GOLGA2Q08379 1002 aa12.79□□□□□ -0.36
VPS35-205ENST00000563984 ZNF467Q7Z7K2 595 aaPredicted RBP12.78□□□□□ -0.36
VPS35-205ENST00000563984 ILDR1Q86SU0 546 aaPredicted RBP12.78□□□□□ -0.36
VPS35-205ENST00000563984 DPY19L2Q6NUT2 758 aa12.75□□□□□ -0.37
VPS35-205ENST00000563984 HOXB1P14653 301 aaPredicted RBP12.72□□□□□ -0.37
VPS35-205ENST00000563984 PSEN1P49768 467 aa12.72□□□□□ -0.37
VPS35-205ENST00000563984 VASPP50552 380 aaPredicted RBP12.71□□□□□ -0.37
VPS35-205ENST00000563984 RNF166Q96A37 237 aaPredicted RBP12.7□□□□□ -0.38
VPS35-205ENST00000563984 CHRM1P11229 460 aaPredicted RBP12.69□□□□□ -0.38
VPS35-205ENST00000563984 GSE1Q14687 1217 aa12.67□□□□□ -0.38
VPS35-205ENST00000563984 ERBB3P21860 1342 aa12.66□□□□□ -0.38
VPS35-205ENST00000563984 KLHL34Q8N239 644 aa12.65□□□□□ -0.38
VPS35-205ENST00000563984 BOLA1Q9Y3E2 137 aa12.65□□□□□ -0.38
VPS35-205ENST00000563984 ZNF710Q8N1W2 664 aa12.64□□□□□ -0.39
VPS35-205ENST00000563984 MYT1LQ9UL68 1186 aa12.6□□□□□ -0.39
VPS35-205ENST00000563984 DOK7Q18PE1 504 aa12.59□□□□□ -0.39
VPS35-205ENST00000563984 PDAP1Q13442 181 aaKnown RBP12.58□□□□□ -0.4
VPS35-205ENST00000563984 G3V3G9 751 aa12.57□□□□□ -0.4
VPS35-205ENST00000563984 VARS2Q5ST30 1063 aaKnown RBP12.57□□□□□ -0.4
VPS35-205ENST00000563984 CABP2Q9NPB3 220 aa12.56□□□□□ -0.4
VPS35-205ENST00000563984 ZNF687Q8N1G0 1237 aa12.52□□□□□ -0.41
VPS35-205ENST00000563984 IFNLR1Q8IU57 520 aaPredicted RBP12.51□□□□□ -0.41
VPS35-205ENST00000563984 RIMBP2O15034 1052 aa12.48□□□□□ -0.41
VPS35-205ENST00000563984 GPR153Q6NV75 609 aa12.44□□□□□ -0.42
VPS35-205ENST00000563984 TMEM92Q6UXU6 159 aa12.44□□□□□ -0.42
VPS35-205ENST00000563984 ZSWIM6Q9HCJ5 1215 aa12.44□□□□□ -0.42
VPS35-205ENST00000563984 SPOCK2Q92563 424 aa12.43□□□□□ -0.42
VPS35-205ENST00000563984 PTGER2P43116 358 aa12.42□□□□□ -0.42
VPS35-205ENST00000563984 CIZ1Q9ULV3 898 aaPredicted RBP12.38□□□□□ -0.43
VPS35-205ENST00000563984 EFCAB3Q8N7B9 438 aa12.36□□□□□ -0.43
VPS35-205ENST00000563984 ANKRD13DQ6ZTN6 518 aa12.35□□□□□ -0.43
VPS35-205ENST00000563984 MICALL2Q8IY33 904 aa12.35□□□□□ -0.43
VPS35-205ENST00000563984 ARSIQ5FYB1 569 aa12.3□□□□□ -0.44
VPS35-205ENST00000563984 LSM11P83369 360 aaKnown RBP eCLIP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms