RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 RASEFQ8IZ41 740 aa13.4□□□□□ -0.26
VPS35-204ENST00000563884 MS4A3Q96HJ5 214 aa13.4□□□□□ -0.26
VPS35-204ENST00000563884 CCDC61Q9Y6R9 512 aa13.4□□□□□ -0.26
VPS35-204ENST00000563884 KIF12Q96FN5 646 aa13.32□□□□□ -0.28
VPS35-204ENST00000563884 NUBP1P53384 320 aa13.3□□□□□ -0.28
VPS35-204ENST00000563884 MAP3K13O43283 966 aa13.27□□□□□ -0.29
VPS35-204ENST00000563884 FAM212AQ96EL1 285 aa13.26□□□□□ -0.29
VPS35-204ENST00000563884 VASPP50552 380 aaPredicted RBP13.24□□□□□ -0.29
VPS35-204ENST00000563884 ASTLQ6HA08 431 aaPredicted RBP13.24□□□□□ -0.29
VPS35-204ENST00000563884 PELP1Q8IZL8 1130 aaKnown RBP13.24□□□□□ -0.29
VPS35-204ENST00000563884 ATMINO43313 823 aaPredicted RBP13.23□□□□□ -0.29
VPS35-204ENST00000563884 KLHL34Q8N239 644 aa13.21□□□□□ -0.29
VPS35-204ENST00000563884 DCAF8Q5TAQ9 597 aa13.19□□□□□ -0.3
VPS35-204ENST00000563884 TRPC6Q9Y210 931 aa13.18□□□□□ -0.3
VPS35-204ENST00000563884 PCDHB13Q9Y5F0 798 aa13.18□□□□□ -0.3
VPS35-204ENST00000563884 ATN1P54259 1190 aaPredicted RBP13.16□□□□□ -0.3
VPS35-204ENST00000563884 SLC39A7Q92504 469 aa13.16□□□□□ -0.3
VPS35-204ENST00000563884 METRNQ9UJH8 293 aa13.16□□□□□ -0.3
VPS35-204ENST00000563884 BMP2KQ9NSY1 1161 aaPredicted RBP13.15□□□□□ -0.3
VPS35-204ENST00000563884 C7P10643 843 aa13.14□□□□□ -0.31
VPS35-204ENST00000563884 SGIP1Q9BQI5 828 aa13.14□□□□□ -0.31
VPS35-204ENST00000563884 TIE1P35590 1138 aa13.13□□□□□ -0.31
VPS35-204ENST00000563884 POTEB2H3BUK9 544 aa13.11□□□□□ -0.31
VPS35-204ENST00000563884 NISCHQ9Y2I1 1504 aa13.09□□□□□ -0.31
VPS35-204ENST00000563884 PYGBP11216 843 aa13.08□□□□□ -0.32
VPS35-204ENST00000563884 IFNL1Q8IU54 200 aa13.08□□□□□ -0.32
VPS35-204ENST00000563884 TTLL13PA6NNM8 815 aa13.07□□□□□ -0.32
VPS35-204ENST00000563884 GSE1Q14687 1217 aa13.03□□□□□ -0.32
VPS35-204ENST00000563884 OTUD5Q96G74 571 aa13.03□□□□□ -0.32
VPS35-204ENST00000563884 TMEM106CQ9BVX2 250 aa13□□□□□ -0.33
VPS35-204ENST00000563884 TRIM35Q9UPQ4 493 aa13□□□□□ -0.33
VPS35-204ENST00000563884 IFNLR1Q8IU57 520 aaPredicted RBP12.99□□□□□ -0.33
VPS35-204ENST00000563884 SEC24BO95487 1268 aa12.97□□□□□ -0.33
VPS35-204ENST00000563884 SPOCK2Q92563 424 aa12.97□□□□□ -0.33
VPS35-204ENST00000563884 PCDHB8Q9UN66 801 aa12.96□□□□□ -0.33
VPS35-204ENST00000563884 MAMSTRQ6ZN01 415 aa12.94□□□□□ -0.34
VPS35-204ENST00000563884 POTEFA5A3E0 1075 aa12.93□□□□□ -0.34
VPS35-204ENST00000563884 POTEJP0CG39 1038 aa12.93□□□□□ -0.34
VPS35-204ENST00000563884 IER5LQ5T953 404 aa12.92□□□□□ -0.34
VPS35-204ENST00000563884 CIZ1Q9ULV3 898 aaPredicted RBP12.92□□□□□ -0.34
VPS35-204ENST00000563884 COLQQ9Y215 455 aaPredicted RBP12.91□□□□□ -0.34
VPS35-204ENST00000563884 SCUBE2Q9NQ36 999 aa12.89□□□□□ -0.35
VPS35-204ENST00000563884 ZNF467Q7Z7K2 595 aaPredicted RBP12.88□□□□□ -0.35
VPS35-204ENST00000563884 CHRM1P11229 460 aaPredicted RBP12.86□□□□□ -0.35
VPS35-204ENST00000563884 PLCG2P16885 1265 aa12.83□□□□□ -0.36
VPS35-204ENST00000563884 PSEN1P49768 467 aa12.77□□□□□ -0.37
VPS35-204ENST00000563884 IRX5P78411 483 aaPredicted RBP12.77□□□□□ -0.37
VPS35-204ENST00000563884 GOLGA2Q08379 1002 aa12.76□□□□□ -0.37
VPS35-204ENST00000563884 OCEL1Q9H607 264 aa12.74□□□□□ -0.37
VPS35-204ENST00000563884 MKRN3Q13064 507 aaKnown RBP12.73□□□□□ -0.37
VPS35-204ENST00000563884 PDAP1Q13442 181 aaKnown RBP12.72□□□□□ -0.37
VPS35-204ENST00000563884 TRIM41Q8WV44 630 aa12.69□□□□□ -0.38
VPS35-204ENST00000563884 FAM163AQ96GL9 167 aaPredicted RBP12.67□□□□□ -0.38
VPS35-204ENST00000563884 SLAIN1Q8ND83 568 aa12.65□□□□□ -0.38
VPS35-204ENST00000563884 ABCC9O60706 1549 aa12.65□□□□□ -0.38
VPS35-204ENST00000563884 POTEMA6NI47 508 aa12.64□□□□□ -0.39
VPS35-204ENST00000563884 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.64□□□□□ -0.393e-7■□□□□ 10.8
VPS35-204ENST00000563884 CABP2Q9NPB3 220 aa12.63□□□□□ -0.39
VPS35-204ENST00000563884 POTEGQ6S5H5 508 aa12.62□□□□□ -0.39
VPS35-204ENST00000563884 PDCD7Q8N8D1 485 aaKnown RBP12.6□□□□□ -0.39
VPS35-204ENST00000563884 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.58□□□□□ -0.4
VPS35-204ENST00000563884 L3MBTL3Q96JM7 780 aaPredicted RBP12.56□□□□□ -0.4
VPS35-204ENST00000563884 LCE2DQ5TA82 110 aaPredicted RBP12.54□□□□□ -0.4
VPS35-204ENST00000563884 RIOK3O14730 519 aaKnown RBP12.53□□□□□ -0.4
VPS35-204ENST00000563884 C3orf67Q6ZVT6 689 aa12.53□□□□□ -0.4
VPS35-204ENST00000563884 DPY19L2Q6NUT2 758 aa12.49□□□□□ -0.41
VPS35-204ENST00000563884 RNF25Q96BH1 459 aaPredicted RBP12.49□□□□□ -0.41
VPS35-204ENST00000563884 PLSCR2Q9NRY7 297 aa12.49□□□□□ -0.41
VPS35-204ENST00000563884 G3V3G9 751 aa12.48□□□□□ -0.41
VPS35-204ENST00000563884 ILDR1Q86SU0 546 aaPredicted RBP12.48□□□□□ -0.41
VPS35-204ENST00000563884 VGFO15240 615 aaPredicted RBP12.47□□□□□ -0.41
VPS35-204ENST00000563884 EFCAB3Q8N7B9 438 aa12.47□□□□□ -0.41
VPS35-204ENST00000563884 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.46□□□□□ -0.41
VPS35-204ENST00000563884 ZFP91Q96JP5 570 aaPredicted RBP12.46□□□□□ -0.41
VPS35-204ENST00000563884 SNPHO15079 494 aa12.43□□□□□ -0.42
VPS35-204ENST00000563884 ST18O60284 1047 aa12.43□□□□□ -0.42
VPS35-204ENST00000563884 PCDH10Q9P2E7 1040 aa12.42□□□□□ -0.42
VPS35-204ENST00000563884 BOLA1Q9Y3E2 137 aa12.42□□□□□ -0.42
VPS35-204ENST00000563884 ECM2O94769 699 aaPredicted RBP12.41□□□□□ -0.42
VPS35-204ENST00000563884 TAOK2Q9UL54 1235 aa12.4□□□□□ -0.42
VPS35-204ENST00000563884 SOX12O15370 315 aa12.36□□□□□ -0.43
VPS35-204ENST00000563884 BCL11BQ9C0K0 894 aaPredicted RBP12.33□□□□□ -0.44
VPS35-204ENST00000563884 PHF8Q9UPP1 1060 aa12.32□□□□□ -0.44
VPS35-204ENST00000563884 STK24Q9Y6E0 443 aa12.32□□□□□ -0.44
VPS35-204ENST00000563884 PKD2Q13563 968 aa12.31□□□□□ -0.44
VPS35-204ENST00000563884 TMEM121BQ9BXQ6 578 aaPredicted RBP12.31□□□□□ -0.44
VPS35-204ENST00000563884 STK25O00506 426 aa12.29□□□□□ -0.44
VPS35-204ENST00000563884 CDAN1Q8IWY9 1227 aa12.29□□□□□ -0.44
VPS35-204ENST00000563884 CCDC180Q9P1Z9 1646 aa12.27□□□□□ -0.44
VPS35-204ENST00000563884 RGL2O15211 777 aa12.27□□□□□ -0.45
VPS35-204ENST00000563884 MARVELD3Q96A59 401 aa12.27□□□□□ -0.45
VPS35-204ENST00000563884 MS4A4AQ96JQ5 239 aa12.27□□□□□ -0.45
VPS35-204ENST00000563884 MICALL2Q8IY33 904 aa12.26□□□□□ -0.45
VPS35-204ENST00000563884 NLRP6P59044 892 aa12.25□□□□□ -0.45
VPS35-204ENST00000563884 EMP3P54852 163 aa12.21□□□□□ -0.45
VPS35-204ENST00000563884 ZNF710Q8N1W2 664 aa12.18□□□□□ -0.46
VPS35-204ENST00000563884 FBXO22Q8NEZ5 403 aa12.18□□□□□ -0.46
VPS35-204ENST00000563884 MFRPQ9BY79 579 aa12.17□□□□□ -0.46
VPS35-204ENST00000563884 HOXB3P14651 431 aaPredicted RBP12.16□□□□□ -0.46
VPS35-204ENST00000563884 DOK7Q18PE1 504 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms