RNA–Protein interactions for RNA: ENST00000559550.1

CASC4-210, Transcript of cancer susceptibility 4, humanhuman

TSL 3

Gene CASC4, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-210ENST00000559550 LCE2DQ5TA82 110 aaPredicted RBP11.63□□□□□ -0.55
CASC4-210ENST00000559550 NPM1P06748 294 aaKnown RBP eCLIP11.62□□□□□ -0.55
CASC4-210ENST00000559550 MS4A3Q96HJ5 214 aa11.62□□□□□ -0.55
CASC4-210ENST00000559550 ATMINO43313 823 aaPredicted RBP11.61□□□□□ -0.55
CASC4-210ENST00000559550 METRNQ9UJH8 293 aa11.61□□□□□ -0.55
CASC4-210ENST00000559550 C7P10643 843 aa11.57□□□□□ -0.56
CASC4-210ENST00000559550 SLC39A7Q92504 469 aa11.57□□□□□ -0.56
CASC4-210ENST00000559550 ATN1P54259 1190 aaPredicted RBP11.48□□□□□ -0.57
CASC4-210ENST00000559550 MAMSTRQ6ZN01 415 aa11.48□□□□□ -0.57
CASC4-210ENST00000559550 POTEFA5A3E0 1075 aa11.47□□□□□ -0.57
CASC4-210ENST00000559550 CCDC61Q9Y6R9 512 aa11.46□□□□□ -0.57
CASC4-210ENST00000559550 TSPYL2Q9H2G4 693 aaPredicted RBP11.42□□□□□ -0.58
CASC4-210ENST00000559550 KIF12Q96FN5 646 aa11.41□□□□□ -0.58
CASC4-210ENST00000559550 FAM163AQ96GL9 167 aaPredicted RBP11.41□□□□□ -0.58
CASC4-210ENST00000559550 BMP2KQ9NSY1 1161 aaPredicted RBP11.4□□□□□ -0.58
CASC4-210ENST00000559550 TRPC6Q9Y210 931 aa11.4□□□□□ -0.58
CASC4-210ENST00000559550 PROM2Q8N271 834 aa11.39□□□□□ -0.59
CASC4-210ENST00000559550 SCUBE2Q9NQ36 999 aa11.39□□□□□ -0.59
CASC4-210ENST00000559550 TIE1P35590 1138 aa11.31□□□□□ -0.6
CASC4-210ENST00000559550 CDAN1Q8IWY9 1227 aa11.31□□□□□ -0.6
CASC4-210ENST00000559550 MAP3K13O43283 966 aa11.3□□□□□ -0.6
CASC4-210ENST00000559550 COLQQ9Y215 455 aaPredicted RBP11.29□□□□□ -0.6
CASC4-210ENST00000559550 TTLL13PA6NNM8 815 aa11.25□□□□□ -0.61
CASC4-210ENST00000559550 RASEFQ8IZ41 740 aa11.24□□□□□ -0.61
CASC4-210ENST00000559550 MMRN1Q13201 1228 aa11.21□□□□□ -0.61
CASC4-210ENST00000559550 SEC24BO95487 1268 aa11.16□□□□□ -0.62
CASC4-210ENST00000559550 IER5LQ5T953 404 aa11.16□□□□□ -0.62
CASC4-210ENST00000559550 TRIM35Q9UPQ4 493 aa11.16□□□□□ -0.62
CASC4-210ENST00000559550 SGIP1Q9BQI5 828 aa11.14□□□□□ -0.63
CASC4-210ENST00000559550 ST18O60284 1047 aa11.12□□□□□ -0.63
CASC4-210ENST00000559550 MIER1Q8N108 512 aa11.12□□□□□ -0.63
CASC4-210ENST00000559550 SPNS2Q8IVW8 549 aa11.09□□□□□ -0.63
CASC4-210ENST00000559550 SLAIN1Q8ND83 568 aa11.08□□□□□ -0.64
CASC4-210ENST00000559550 PCDHB13Q9Y5F0 798 aa11.08□□□□□ -0.64
CASC4-210ENST00000559550 PLEKHG5O94827 1062 aa11.07□□□□□ -0.64
CASC4-210ENST00000559550 NUBP1P53384 320 aa11.06□□□□□ -0.64
CASC4-210ENST00000559550 IFNL1Q8IU54 200 aa11.05□□□□□ -0.64
CASC4-210ENST00000559550 IRX5P78411 483 aaPredicted RBP11.02□□□□□ -0.65
CASC4-210ENST00000559550 TMEM106CQ9BVX2 250 aa10.99□□□□□ -0.65
CASC4-210ENST00000559550 PLCG2P16885 1265 aa10.97□□□□□ -0.65
CASC4-210ENST00000559550 PLCD3Q8N3E9 789 aa10.95□□□□□ -0.66
CASC4-210ENST00000559550 TMEM121BQ9BXQ6 578 aaPredicted RBP10.93□□□□□ -0.66
CASC4-210ENST00000559550 OCEL1Q9H607 264 aa10.9□□□□□ -0.66
CASC4-210ENST00000559550 ZBTB47Q9UFB7 747 aaPredicted RBP10.89□□□□□ -0.67
CASC4-210ENST00000559550 FAM212AQ96EL1 285 aa10.88□□□□□ -0.67
CASC4-210ENST00000559550 MARVELD3Q96A59 401 aa10.86□□□□□ -0.67
CASC4-210ENST00000559550 SNPHO15079 494 aa10.84□□□□□ -0.67
CASC4-210ENST00000559550 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.83□□□□□ -0.68
CASC4-210ENST00000559550 PYGBP11216 843 aa10.79□□□□□ -0.68
CASC4-210ENST00000559550 PDCD7Q8N8D1 485 aaKnown RBP10.79□□□□□ -0.68
CASC4-210ENST00000559550 POTEB3A0JP26 581 aa10.78□□□□□ -0.68
CASC4-210ENST00000559550 POTEBQ6S5H4 581 aa10.78□□□□□ -0.68
CASC4-210ENST00000559550 PCDHB8Q9UN66 801 aa10.78□□□□□ -0.68
CASC4-210ENST00000559550 KRTAP3-3Q9BYR6 98 aa10.77□□□□□ -0.69
CASC4-210ENST00000559550 KRTAP3-2Q9BYR7 98 aa10.77□□□□□ -0.69
CASC4-210ENST00000559550 DCAF8Q5TAQ9 597 aa10.73□□□□□ -0.69
CASC4-210ENST00000559550 HS3ST6Q96QI5 342 aa10.71□□□□□ -0.69
CASC4-210ENST00000559550 EMP3P54852 163 aa10.7□□□□□ -0.7
CASC4-210ENST00000559550 FAM205CA6NFA0 338 aa10.66□□□□□ -0.7
CASC4-210ENST00000559550 C3orf67Q6ZVT6 689 aa10.66□□□□□ -0.7
CASC4-210ENST00000559550 L3MBTL3Q96JM7 780 aaPredicted RBP10.66□□□□□ -0.7
CASC4-210ENST00000559550 ILDR1Q86SU0 546 aaPredicted RBP10.64□□□□□ -0.71
CASC4-210ENST00000559550 MKRN3Q13064 507 aaKnown RBP10.61□□□□□ -0.71
CASC4-210ENST00000559550 ZNF467Q7Z7K2 595 aaPredicted RBP10.6□□□□□ -0.71
CASC4-210ENST00000559550 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.59□□□□□ -0.71
CASC4-210ENST00000559550 HOXB3P14651 431 aaPredicted RBP10.57□□□□□ -0.72
CASC4-210ENST00000559550 FKBP8Q14318 412 aa10.57□□□□□ -0.72
CASC4-210ENST00000559550 CHRM1P11229 460 aaPredicted RBP10.56□□□□□ -0.72
CASC4-210ENST00000559550 GOLGA2Q08379 1002 aa10.55□□□□□ -0.72
CASC4-210ENST00000559550 DPY19L2Q6NUT2 758 aa10.55□□□□□ -0.72
CASC4-210ENST00000559550 PSEN1P49768 467 aa10.54□□□□□ -0.72
CASC4-210ENST00000559550 GSE1Q14687 1217 aa10.53□□□□□ -0.72
CASC4-210ENST00000559550 HOXB1P14653 301 aaPredicted RBP10.5□□□□□ -0.73
CASC4-210ENST00000559550 BOLA1Q9Y3E2 137 aa10.47□□□□□ -0.73
CASC4-210ENST00000559550 FBXO3Q9UK99 471 aa10.46□□□□□ -0.73
CASC4-210ENST00000559550 PDAP1Q13442 181 aaKnown RBP10.43□□□□□ -0.74
CASC4-210ENST00000559550 RNF166Q96A37 237 aaPredicted RBP10.42□□□□□ -0.74
CASC4-210ENST00000559550 VASPP50552 380 aaPredicted RBP10.41□□□□□ -0.74
CASC4-210ENST00000559550 CABP2Q9NPB3 220 aa10.41□□□□□ -0.74
CASC4-210ENST00000559550 ERBB3P21860 1342 aa10.4□□□□□ -0.74
CASC4-210ENST00000559550 KLHL34Q8N239 644 aa10.4□□□□□ -0.74
CASC4-210ENST00000559550 DOK7Q18PE1 504 aa10.39□□□□□ -0.75
CASC4-210ENST00000559550 ZNF710Q8N1W2 664 aa10.39□□□□□ -0.75
CASC4-210ENST00000559550 G3V3G9 751 aa10.35□□□□□ -0.75
CASC4-210ENST00000559550 VARS2Q5ST30 1063 aaKnown RBP10.35□□□□□ -0.75
CASC4-210ENST00000559550 TMEM92Q6UXU6 159 aa10.33□□□□□ -0.76
CASC4-210ENST00000559550 ZNF687Q8N1G0 1237 aa10.33□□□□□ -0.76
CASC4-210ENST00000559550 MYT1LQ9UL68 1186 aa10.33□□□□□ -0.76
CASC4-210ENST00000559550 GPR153Q6NV75 609 aa10.29□□□□□ -0.76
CASC4-210ENST00000559550 ZSWIM6Q9HCJ5 1215 aa10.29□□□□□ -0.76
CASC4-210ENST00000559550 RIMBP2O15034 1052 aa10.28□□□□□ -0.76
CASC4-210ENST00000559550 EFCAB3Q8N7B9 438 aa10.26□□□□□ -0.77
CASC4-210ENST00000559550 MICALL2Q8IY33 904 aa10.24□□□□□ -0.77
CASC4-210ENST00000559550 PTGER2P43116 358 aa10.23□□□□□ -0.77
CASC4-210ENST00000559550 IFNLR1Q8IU57 520 aaPredicted RBP10.22□□□□□ -0.77
CASC4-210ENST00000559550 SPOCK2Q92563 424 aa10.22□□□□□ -0.77
CASC4-210ENST00000559550 CIZ1Q9ULV3 898 aaPredicted RBP10.22□□□□□ -0.77
CASC4-210ENST00000559550 MS4A4AQ96JQ5 239 aa10.18□□□□□ -0.78
CASC4-210ENST00000559550 ARSIQ5FYB1 569 aa10.15□□□□□ -0.78
CASC4-210ENST00000559550 ZNF316A6NFI3 1004 aaPredicted RBP10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms