RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 EVX2Q03828 476 aa15.46■□□□□ 0.07
RTF1-204ENST00000558117 ZNF579Q8NAF0 562 aaKnown RBP15.43■□□□□ 0.06
RTF1-204ENST00000558117 RTN4Q9NQC3 1192 aaKnown RBP15.43■□□□□ 0.06
RTF1-204ENST00000558117 CCDC61Q9Y6R9 512 aa15.43■□□□□ 0.06
RTF1-204ENST00000558117 AMER1Q5JTC6 1135 aaPredicted RBP15.38■□□□□ 0.05
RTF1-204ENST00000558117 PHF12Q96QT6 1004 aa15.38■□□□□ 0.05
RTF1-204ENST00000558117 SP7Q8TDD2 431 aaPredicted RBP15.37■□□□□ 0.05
RTF1-204ENST00000558117 TRIM41Q8WV44 630 aa15.35■□□□□ 0.05
RTF1-204ENST00000558117 PYGBP11216 843 aa15.34■□□□□ 0.05
RTF1-204ENST00000558117 CLCN6P51797 869 aa15.33■□□□□ 0.04
RTF1-204ENST00000558117 KIF12Q96FN5 646 aa15.28■□□□□ 0.04
RTF1-204ENST00000558117 PKD2Q13563 968 aa15.27■□□□□ 0.04
RTF1-204ENST00000558117 ECM2O94769 699 aaPredicted RBP15.26■□□□□ 0.03
RTF1-204ENST00000558117 MAP3K13O43283 966 aa15.25■□□□□ 0.03
RTF1-204ENST00000558117 PCDHB13Q9Y5F0 798 aa15.25■□□□□ 0.03
RTF1-204ENST00000558117 GABBR2O75899 941 aa15.24■□□□□ 0.03
RTF1-204ENST00000558117 CHRM1P11229 460 aaPredicted RBP15.24■□□□□ 0.03
RTF1-204ENST00000558117 SGIP1Q9BQI5 828 aa15.22■□□□□ 0.03
RTF1-204ENST00000558117 MS4A3Q96HJ5 214 aa15.21■□□□□ 0.03
RTF1-204ENST00000558117 GALR2O43603 387 aaPredicted RBP15.18■□□□□ 0.02
RTF1-204ENST00000558117 ZNF467Q7Z7K2 595 aaPredicted RBP15.17■□□□□ 0.02
RTF1-204ENST00000558117 IFNL1Q8IU54 200 aa15.14■□□□□ 0.01
RTF1-204ENST00000558117 PCDHB8Q9UN66 801 aa15.11■□□□□ 0.01
RTF1-204ENST00000558117 DCBLD2Q96PD2 775 aa15.08■□□□□ 0
RTF1-204ENST00000558117 RIOK3O14730 519 aaKnown RBP15.07■□□□□ 0
RTF1-204ENST00000558117 TAOK2Q9UL54 1235 aa15.06■□□□□ 0
RTF1-204ENST00000558117 RGL2O15211 777 aa15.04■□□□□ -0
RTF1-204ENST00000558117 RNF25Q96BH1 459 aaPredicted RBP15.03■□□□□ -0
RTF1-204ENST00000558117 TIE1P35590 1138 aa15.01□□□□□ -0.01
RTF1-204ENST00000558117 PDAP1Q13442 181 aaKnown RBP15.01□□□□□ -0.01
RTF1-204ENST00000558117 TRPC6Q9Y210 931 aa15.01□□□□□ -0.01
RTF1-204ENST00000558117 VGFO15240 615 aaPredicted RBP15□□□□□ -0.01
RTF1-204ENST00000558117 DCAF8L2P0C7V8 631 aa14.98□□□□□ -0.01
RTF1-204ENST00000558117 PSEN1P49768 467 aa14.97□□□□□ -0.01
RTF1-204ENST00000558117 TMEM106CQ9BVX2 250 aa14.97□□□□□ -0.01
RTF1-204ENST00000558117 BMP2KQ9NSY1 1161 aaPredicted RBP14.95□□□□□ -0.02
RTF1-204ENST00000558117 TTLL13PA6NNM8 815 aa14.93□□□□□ -0.02
RTF1-204ENST00000558117 ASTLQ6HA08 431 aaPredicted RBP14.91□□□□□ -0.02
RTF1-204ENST00000558117 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.9□□□□□ -0.02
RTF1-204ENST00000558117 ATMINO43313 823 aaPredicted RBP14.9□□□□□ -0.02
RTF1-204ENST00000558117 ZFP91Q96JP5 570 aaPredicted RBP14.9□□□□□ -0.02
RTF1-204ENST00000558117 GOLGA2Q08379 1002 aa14.88□□□□□ -0.03
RTF1-204ENST00000558117 ATN1P54259 1190 aaPredicted RBP14.87□□□□□ -0.03
RTF1-204ENST00000558117 STK25O00506 426 aa14.85□□□□□ -0.03
RTF1-204ENST00000558117 POTEIP0CG38 1075 aa14.85□□□□□ -0.03
RTF1-204ENST00000558117 TRIM35Q9UPQ4 493 aa14.85□□□□□ -0.03
RTF1-204ENST00000558117 BCL11BQ9C0K0 894 aaPredicted RBP14.82□□□□□ -0.04
RTF1-204ENST00000558117 CABP2Q9NPB3 220 aa14.82□□□□□ -0.04
RTF1-204ENST00000558117 STK24Q9Y6E0 443 aa14.82□□□□□ -0.04
RTF1-204ENST00000558117 CHGAP10645 457 aaKnown RBP14.79□□□□□ -0.04
RTF1-204ENST00000558117 MKRN3Q13064 507 aaKnown RBP14.78□□□□□ -0.04
RTF1-204ENST00000558117 SLC39A7Q92504 469 aa14.77□□□□□ -0.05
RTF1-204ENST00000558117 PELP1Q8IZL8 1130 aaKnown RBP14.76□□□□□ -0.05
RTF1-204ENST00000558117 HS6ST3Q8IZP7 471 aa14.75□□□□□ -0.05
RTF1-204ENST00000558117 IER5LQ5T953 404 aa14.73□□□□□ -0.05
RTF1-204ENST00000558117 C7P10643 843 aa14.72□□□□□ -0.05
RTF1-204ENST00000558117 METRNQ9UJH8 293 aa14.72□□□□□ -0.05
RTF1-204ENST00000558117 EFCAB3Q8N7B9 438 aa14.7□□□□□ -0.06
RTF1-204ENST00000558117 SEC24BO95487 1268 aa14.69□□□□□ -0.06
RTF1-204ENST00000558117 PLCG2P16885 1265 aa14.64□□□□□ -0.07
RTF1-204ENST00000558117 SOX12O15370 315 aa14.63□□□□□ -0.07
RTF1-204ENST00000558117 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.63□□□□□ -0.07
RTF1-204ENST00000558117 IRX5P78411 483 aaPredicted RBP14.6□□□□□ -0.07
RTF1-204ENST00000558117 OCEL1Q9H607 264 aa14.59□□□□□ -0.07
RTF1-204ENST00000558117 NLRP6P59044 892 aa14.56□□□□□ -0.08
RTF1-204ENST00000558117 DNAJC5Q9H3Z4 198 aa14.56□□□□□ -0.08
RTF1-204ENST00000558117 PHF8Q9UPP1 1060 aa14.56□□□□□ -0.08
RTF1-204ENST00000558117 COLQQ9Y215 455 aaPredicted RBP14.56□□□□□ -0.08
RTF1-204ENST00000558117 BBXQ8WY36 941 aaPredicted RBP14.53□□□□□ -0.08
RTF1-204ENST00000558117 MFRPQ9BY79 579 aa14.52□□□□□ -0.09
RTF1-204ENST00000558117 POTEFA5A3E0 1075 aa14.51□□□□□ -0.09
RTF1-204ENST00000558117 RYDENQ9NUL5 291 aaKnown RBP14.51□□□□□ -0.09
RTF1-204ENST00000558117 PDCD7Q8N8D1 485 aaKnown RBP14.5□□□□□ -0.09
RTF1-204ENST00000558117 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.5□□□□□ -0.09
RTF1-204ENST00000558117 NKX1-1Q15270 411 aaPredicted RBP14.49□□□□□ -0.09
RTF1-204ENST00000558117 G3V3G9 751 aa14.48□□□□□ -0.09
RTF1-204ENST00000558117 ILDR1Q86SU0 546 aaPredicted RBP14.48□□□□□ -0.09
RTF1-204ENST00000558117 FBXO22Q8NEZ5 403 aa14.46□□□□□ -0.09
RTF1-204ENST00000558117 L3MBTL3Q96JM7 780 aaPredicted RBP14.44□□□□□ -0.1
RTF1-204ENST00000558117 MS4A4AQ96JQ5 239 aa14.43□□□□□ -0.1
RTF1-204ENST00000558117 LHX8Q68G74 356 aa14.42□□□□□ -0.1
RTF1-204ENST00000558117 DPY19L2Q6NUT2 758 aa14.42□□□□□ -0.1
RTF1-204ENST00000558117 POTEB2H3BUK9 544 aa14.38□□□□□ -0.11
RTF1-204ENST00000558117 MAMSTRQ6ZN01 415 aa14.37□□□□□ -0.11
RTF1-204ENST00000558117 PAXIP1Q6ZW49 1069 aaPredicted RBP14.37□□□□□ -0.11
RTF1-204ENST00000558117 BOLA1Q9Y3E2 137 aa14.37□□□□□ -0.11
RTF1-204ENST00000558117 GTPBP6O43824 516 aaPredicted RBP14.35□□□□□ -0.11
RTF1-204ENST00000558117 SPRYD3Q8NCJ5 442 aa14.35□□□□□ -0.11
RTF1-204ENST00000558117 CFAP44Q96MT7 982 aa14.35□□□□□ -0.11
RTF1-204ENST00000558117 SCUBE2Q9NQ36 999 aa14.35□□□□□ -0.11
RTF1-204ENST00000558117 C3orf67Q6ZVT6 689 aa14.34□□□□□ -0.11
RTF1-204ENST00000558117 NISCHQ9Y2I1 1504 aa14.33□□□□□ -0.12
RTF1-204ENST00000558117 PLCB2Q00722 1185 aa14.31□□□□□ -0.12
RTF1-204ENST00000558117 MICALL2Q8IY33 904 aa14.3□□□□□ -0.12
RTF1-204ENST00000558117 ABCC9O60706 1549 aa14.3□□□□□ -0.12
RTF1-204ENST00000558117 POTEJP0CG39 1038 aa14.29□□□□□ -0.12
RTF1-204ENST00000558117 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.29□□□□□ -0.12
RTF1-204ENST00000558117 PPP1R37O75864 691 aa14.28□□□□□ -0.12
RTF1-204ENST00000558117 TMEM121BQ9BXQ6 578 aaPredicted RBP14.25□□□□□ -0.13
RTF1-204ENST00000558117 OTUD5Q96G74 571 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms