RNA–Protein interactions for RNA: ENST00000557782.1

TDP1-217, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 318 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-217ENST00000557782 GSE1Q14687 1217 aa7.15□□□□□ -1.26
TDP1-217ENST00000557782 PABPN1Q86U42 306 aaKnown RBP eCLIP7.15□□□□□ -1.26
TDP1-217ENST00000557782 P3H3Q8IVL6 736 aa7.14□□□□□ -1.27
TDP1-217ENST00000557782 GTPBP6O43824 516 aaPredicted RBP7.13□□□□□ -1.27
TDP1-217ENST00000557782 ABCB7O75027 752 aa7.13□□□□□ -1.27
TDP1-217ENST00000557782 NKX1-1Q15270 411 aaPredicted RBP7.12□□□□□ -1.27
TDP1-217ENST00000557782 RYDENQ9NUL5 291 aaKnown RBP7.12□□□□□ -1.27
TDP1-217ENST00000557782 RNF25Q96BH1 459 aaPredicted RBP7.11□□□□□ -1.27
TDP1-217ENST00000557782 RIOK3O14730 519 aaKnown RBP7.1□□□□□ -1.27
TDP1-217ENST00000557782 STK25O00506 426 aa7.08□□□□□ -1.28
TDP1-217ENST00000557782 OSCARQ8IYS5 282 aa7.08□□□□□ -1.28
TDP1-217ENST00000557782 VGFO15240 615 aaPredicted RBP7.06□□□□□ -1.28
TDP1-217ENST00000557782 LMOD2Q6P5Q4 547 aa7.05□□□□□ -1.28
TDP1-217ENST00000557782 RNF39Q9H2S5 420 aa7.04□□□□□ -1.28
TDP1-217ENST00000557782 C1QBPQ07021 282 aaKnown RBP7.03□□□□□ -1.28
TDP1-217ENST00000557782 DCAF8Q5TAQ9 597 aa7.03□□□□□ -1.28
TDP1-217ENST00000557782 WDR70Q9NW82 654 aa7.03□□□□□ -1.28
TDP1-217ENST00000557782 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.02□□□□□ -1.29
TDP1-217ENST00000557782 NUBP1P53384 320 aa7□□□□□ -1.29
TDP1-217ENST00000557782 BRPF1P55201 1214 aaPredicted RBP7□□□□□ -1.29
TDP1-217ENST00000557782 SGIP1Q9BQI5 828 aa7□□□□□ -1.29
TDP1-217ENST00000557782 STK24Q9Y6E0 443 aa7□□□□□ -1.29
TDP1-217ENST00000557782 FAM212AQ96EL1 285 aa6.99□□□□□ -1.29
TDP1-217ENST00000557782 SUPT5HO00267 1087 aaKnown RBP6.98□□□□□ -1.29
TDP1-217ENST00000557782 BCL11BQ9C0K0 894 aaPredicted RBP6.98□□□□□ -1.29
TDP1-217ENST00000557782 NEUROD2Q15784 382 aa6.97□□□□□ -1.29
TDP1-217ENST00000557782 KCNV2Q8TDN2 545 aa6.97□□□□□ -1.29
TDP1-217ENST00000557782 RANGAP1P46060 587 aaPredicted RBP6.96□□□□□ -1.3
TDP1-217ENST00000557782 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.95□□□□□ -1.3
TDP1-217ENST00000557782 CHRM1P11229 460 aaPredicted RBP6.95□□□□□ -1.3
TDP1-217ENST00000557782 ZFP91Q96JP5 570 aaPredicted RBP6.95□□□□□ -1.3
TDP1-217ENST00000557782 DSG3P32926 999 aa6.93□□□□□ -1.3
TDP1-217ENST00000557782 PODXL2Q9NZ53 605 aa6.93□□□□□ -1.3
TDP1-217ENST00000557782 ZC3H15Q8WU90 426 aaKnown RBP6.91□□□□□ -1.3
TDP1-217ENST00000557782 ARHGEF1Q92888 912 aaKnown RBP6.88□□□□□ -1.31
TDP1-217ENST00000557782 SLC24A3Q9HC58 644 aa6.88□□□□□ -1.31
TDP1-217ENST00000557782 CADPS2Q86UW7 1296 aa6.86□□□□□ -1.31
TDP1-217ENST00000557782 PYGBP11216 843 aa6.84□□□□□ -1.31
TDP1-217ENST00000557782 TESPA1A2RU30 521 aaPredicted RBP6.82□□□□□ -1.32
TDP1-217ENST00000557782 E2F4Q16254 413 aa6.82□□□□□ -1.32
TDP1-217ENST00000557782 SMYD5Q6GMV2 418 aa6.82□□□□□ -1.32
TDP1-217ENST00000557782 RASEFQ8IZ41 740 aa6.82□□□□□ -1.32
TDP1-217ENST00000557782 SPDYE1Q8NFV5 336 aaPredicted RBP6.81□□□□□ -1.32
TDP1-217ENST00000557782 UBTFP17480 764 aaKnown RBP6.8□□□□□ -1.32
TDP1-217ENST00000557782 ZMYND15Q9H091 742 aa6.8□□□□□ -1.32
TDP1-217ENST00000557782 RSPH6AQ9H0K4 717 aa6.8□□□□□ -1.32
TDP1-217ENST00000557782 SEMA3EO15041 775 aa6.79□□□□□ -1.32
TDP1-217ENST00000557782 ZMYND10O75800 440 aa6.79□□□□□ -1.32
TDP1-217ENST00000557782 ZNF467Q7Z7K2 595 aaPredicted RBP6.79□□□□□ -1.32
TDP1-217ENST00000557782 CREBZFQ9NS37 354 aa6.79□□□□□ -1.32
TDP1-217ENST00000557782 PRR29P0C7W0 189 aa6.78□□□□□ -1.32
TDP1-217ENST00000557782 MNX1P50219 401 aaPredicted RBP6.78□□□□□ -1.32
TDP1-217ENST00000557782 PDAP1Q13442 181 aaKnown RBP6.76□□□□□ -1.33
TDP1-217ENST00000557782 BARGINQ6ZT62 677 aa6.75□□□□□ -1.33
TDP1-217ENST00000557782 CLEC11AQ9Y240 323 aa6.75□□□□□ -1.33
TDP1-217ENST00000557782 TRIM26Q12899 539 aaPredicted RBP6.74□□□□□ -1.33
TDP1-217ENST00000557782 AK7Q96M32 723 aa6.74□□□□□ -1.33
TDP1-217ENST00000557782 MFRPQ9BY79 579 aa6.73□□□□□ -1.33
TDP1-217ENST00000557782 NPM2Q86SE8 214 aaKnown RBP6.71□□□□□ -1.34
TDP1-217ENST00000557782 KRI1Q8N9T8 703 aaKnown RBP6.7□□□□□ -1.34
TDP1-217ENST00000557782 GPBP1L1Q9HC44 474 aaPredicted RBP6.7□□□□□ -1.34
TDP1-217ENST00000557782 IL27Q8NEV9 243 aa6.69□□□□□ -1.34
TDP1-217ENST00000557782 ARID3AQ99856 593 aa6.69□□□□□ -1.34
TDP1-217ENST00000557782 NLRP6P59044 892 aa6.68□□□□□ -1.34
TDP1-217ENST00000557782 GPIHBP1Q8IV16 184 aa6.68□□□□□ -1.34
TDP1-217ENST00000557782 AKT1S1Q96B36 256 aa6.68□□□□□ -1.34
TDP1-217ENST00000557782 KDM4CQ9H3R0 1056 aa6.68□□□□□ -1.34
TDP1-217ENST00000557782 PDE4AP27815 886 aa6.67□□□□□ -1.34
TDP1-217ENST00000557782 PSEN1P49768 467 aa6.67□□□□□ -1.34
TDP1-217ENST00000557782 ARIH1Q9Y4X5 557 aaPredicted RBP6.67□□□□□ -1.34
TDP1-217ENST00000557782 PPP1R37O75864 691 aa6.66□□□□□ -1.34
TDP1-217ENST00000557782 RBM42Q9BTD8 480 aaKnown RBP6.66□□□□□ -1.34
TDP1-217ENST00000557782 LARP6Q9BRS8 491 aaKnown RBP6.65□□□□□ -1.34
TDP1-217ENST00000557782 PCDHB8Q9UN66 801 aa6.65□□□□□ -1.34
TDP1-217ENST00000557782 PCDHB13Q9Y5F0 798 aa6.65□□□□□ -1.34
TDP1-217ENST00000557782 SOX12O15370 315 aa6.64□□□□□ -1.35
TDP1-217ENST00000557782 HRCP23327 699 aa6.64□□□□□ -1.35
TDP1-217ENST00000557782 TSPYL2Q9H2G4 693 aaPredicted RBP6.64□□□□□ -1.35
TDP1-217ENST00000557782 ZBTB7CA1YPR0 619 aa6.63□□□□□ -1.35
TDP1-217ENST00000557782 PDE4DQ08499 809 aa6.63□□□□□ -1.35
TDP1-217ENST00000557782 MFSD10Q14728 455 aa6.63□□□□□ -1.35
TDP1-217ENST00000557782 ZNF579Q8NAF0 562 aaKnown RBP6.63□□□□□ -1.35
TDP1-217ENST00000557782 FBXO22Q8NEZ5 403 aa6.63□□□□□ -1.35
TDP1-217ENST00000557782 NCKAP5LQ9HCH0 1330 aa6.62□□□□□ -1.35
TDP1-217ENST00000557782 TRIM66O15016 1216 aa6.62□□□□□ -1.35
TDP1-217ENST00000557782 FLIIQ13045 1269 aa6.62□□□□□ -1.35
TDP1-217ENST00000557782 DDX27Q96GQ7 796 aaKnown RBP6.62□□□□□ -1.35
TDP1-217ENST00000557782 MKRN3Q13064 507 aaKnown RBP6.61□□□□□ -1.35
TDP1-217ENST00000557782 RBM26Q5T8P6 1007 aaKnown RBP6.61□□□□□ -1.35
TDP1-217ENST00000557782 EFCAB3Q8N7B9 438 aa6.61□□□□□ -1.35
TDP1-217ENST00000557782 PHF8Q9UPP1 1060 aa6.61□□□□□ -1.35
TDP1-217ENST00000557782 PDIA4P13667 645 aaKnown RBP6.6□□□□□ -1.35
TDP1-217ENST00000557782 CCDC9Q9Y3X0 531 aaKnown RBP6.6□□□□□ -1.35
TDP1-217ENST00000557782 ZNF316A6NFI3 1004 aaPredicted RBP6.59□□□□□ -1.35
TDP1-217ENST00000557782 APBB1O00213 710 aa6.59□□□□□ -1.35
TDP1-217ENST00000557782 CAMK2BQ13554 666 aa6.59□□□□□ -1.35
TDP1-217ENST00000557782 CRISPLD2Q9H0B8 497 aa6.59□□□□□ -1.35
TDP1-217ENST00000557782 C1orf115Q9H7X2 142 aa6.59□□□□□ -1.35
TDP1-217ENST00000557782 CABP2Q9NPB3 220 aa6.59□□□□□ -1.35
TDP1-217ENST00000557782 REM2Q8IYK8 340 aaPredicted RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms