RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 FAM69CQ0P6D2 419 aa22.45■■□□□ 1.18
SHMT2-223ENST00000556689 KIF13AQ9H1H9 1805 aa22.36■■□□□ 1.17
SHMT2-223ENST00000556689 ABCC10Q5T3U5 1492 aa22.36■■□□□ 1.17
SHMT2-223ENST00000556689 IGF1RP08069 1367 aa22.35■■□□□ 1.17
SHMT2-223ENST00000556689 RUSC2Q8N2Y8 1516 aa22.33■■□□□ 1.17
SHMT2-223ENST00000556689 KIAA0586Q9BVV6 1533 aa22.31■■□□□ 1.16
SHMT2-223ENST00000556689 MAPKBP1O60336 1514 aa22.29■■□□□ 1.16
SHMT2-223ENST00000556689 KIF27Q86VH2 1401 aa22.28■■□□□ 1.16
SHMT2-223ENST00000556689 ADCY10Q96PN6 1610 aa22.24■■□□□ 1.15
SHMT2-223ENST00000556689 PTPRGP23470 1445 aa22.22■■□□□ 1.15
SHMT2-223ENST00000556689 DIP2BQ9P265 1576 aa22.21■■□□□ 1.15
SHMT2-223ENST00000556689 TTBK1Q5TCY1 1321 aaPredicted RBP22.2■■□□□ 1.14
SHMT2-223ENST00000556689 CARMIL1Q5VZK9 1371 aa22.18■■□□□ 1.14
SHMT2-223ENST00000556689 KDM4FA0A1W2PPD8 638 aa22.16■■□□□ 1.14
SHMT2-223ENST00000556689 CUL7Q14999 1698 aa22.15■■□□□ 1.14
SHMT2-223ENST00000556689 CARMIL2Q6F5E8 1435 aa22.14■■□□□ 1.13
SHMT2-223ENST00000556689 TNIKQ9UKE5 1360 aa22.13■■□□□ 1.13
SHMT2-223ENST00000556689 KDM6BO15054 1643 aa22.11■■□□□ 1.13
SHMT2-223ENST00000556689 ABCC2Q92887 1545 aa22.06■■□□□ 1.12
SHMT2-223ENST00000556689 TSPOAP1O95153 1857 aa22.05■■□□□ 1.12
SHMT2-223ENST00000556689 ASXL2Q76L83 1435 aa22.04■■□□□ 1.12
SHMT2-223ENST00000556689 PLB1Q6P1J6 1458 aa22.03■■□□□ 1.12
SHMT2-223ENST00000556689 UACAQ9BZF9 1416 aa22■■□□□ 1.11
SHMT2-223ENST00000556689 UHRF1BP1LA0JNW5 1464 aa21.99■■□□□ 1.11
SHMT2-223ENST00000556689 IQGAP2Q13576 1575 aa21.99■■□□□ 1.11
SHMT2-223ENST00000556689 GLI2P10070 1586 aa21.95■■□□□ 1.11
SHMT2-223ENST00000556689 DISP1Q96F81 1524 aa21.94■■□□□ 1.1
SHMT2-223ENST00000556689 RAPGEF2Q9Y4G8 1499 aa21.9■■□□□ 1.1
SHMT2-223ENST00000556689 KDM5BQ9UGL1 1544 aa21.89■■□□□ 1.09
SHMT2-223ENST00000556689 EPRSP07814 1512 aaKnown RBP21.88■■□□□ 1.09
SHMT2-223ENST00000556689 UGGT2Q9NYU1 1516 aa21.86■■□□□ 1.09
SHMT2-223ENST00000556689 COL17A1Q9UMD9 1497 aaPredicted RBP21.86■■□□□ 1.09
SHMT2-223ENST00000556689 PPRC1Q5VV67 1664 aaKnown RBP21.85■■□□□ 1.09
SHMT2-223ENST00000556689 TEX14Q8IWB6 1497 aa21.83■■□□□ 1.08
SHMT2-223ENST00000556689 ADGRL1O94910 1474 aa21.81■■□□□ 1.08
SHMT2-223ENST00000556689 KIAA0556O60303 1618 aa21.77■■□□□ 1.08
SHMT2-223ENST00000556689 ZCCHC11Q5TAX3 1644 aaKnown RBP21.77■■□□□ 1.08
SHMT2-223ENST00000556689 MAP3K4Q9Y6R4 1608 aa21.77■■□□□ 1.08
SHMT2-223ENST00000556689 ILDR1Q86SU0 546 aaPredicted RBP21.77■■□□□ 1.08
SHMT2-223ENST00000556689 KCNH8Q96L42 1107 aa21.76■■□□□ 1.07
SHMT2-223ENST00000556689 WDR7Q9Y4E6 1490 aa21.75■■□□□ 1.07
SHMT2-223ENST00000556689 CD109Q6YHK3 1445 aa21.71■■□□□ 1.07
SHMT2-223ENST00000556689 GOLGA3Q08378 1498 aa21.71■■□□□ 1.07
SHMT2-223ENST00000556689 FAM9AQ8IZU1 332 aaPredicted RBP21.68■■□□□ 1.06
SHMT2-223ENST00000556689 MAGI3Q5TCQ9 1506 aa21.65■■□□□ 1.06
SHMT2-223ENST00000556689 ABCA8O94911 1581 aa21.61■■□□□ 1.05
SHMT2-223ENST00000556689 PRXQ9BXM0 1461 aa21.59■■□□□ 1.05
SHMT2-223ENST00000556689 P3H3Q8IVL6 736 aa21.58■■□□□ 1.05
SHMT2-223ENST00000556689 CTTNBP2Q8WZ74 1663 aa21.58■■□□□ 1.05
SHMT2-223ENST00000556689 ARID3CA6NKF2 412 aa21.57■■□□□ 1.04
SHMT2-223ENST00000556689 HECW2Q9P2P5 1572 aa21.57■■□□□ 1.04
SHMT2-223ENST00000556689 CFAP43Q8NDM7 1665 aa21.56■■□□□ 1.04
SHMT2-223ENST00000556689 ATP10BO94823 1461 aa21.52■■□□□ 1.03
SHMT2-223ENST00000556689 ARAP3Q8WWN8 1544 aa21.5■■□□□ 1.03
SHMT2-223ENST00000556689 PHLDB1Q86UU1 1377 aa21.49■■□□□ 1.03
SHMT2-223ENST00000556689 CSRNP3Q8WYN3 585 aa21.47■■□□□ 1.03
SHMT2-223ENST00000556689 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.46■■□□□ 1.03
SHMT2-223ENST00000556689 HNRNPUL2Q1KMD3 747 aaKnown RBP21.46■■□□□ 1.03
SHMT2-223ENST00000556689 RAPGEF3O95398 923 aa21.44■■□□□ 1.02
SHMT2-223ENST00000556689 KIF21BO75037 1637 aa21.4■■□□□ 1.02
SHMT2-223ENST00000556689 ABCA9Q8IUA7 1624 aa21.37■■□□□ 1.01
SHMT2-223ENST00000556689 NEO1Q92859 1461 aa21.36■■□□□ 1.01
SHMT2-223ENST00000556689 ARID4BQ4LE39 1312 aaPredicted RBP21.35■■□□□ 1.01
SHMT2-223ENST00000556689 RANGAP1P46060 587 aaPredicted RBP21.35■■□□□ 1.01
SHMT2-223ENST00000556689 PLEKHD1A6NEE1 506 aa21.34■■□□□ 1.01
SHMT2-223ENST00000556689 PTPRMP28827 1452 aa21.33■■□□□ 1.01
SHMT2-223ENST00000556689 SAMD9Q5K651 1589 aa21.31■■□□□ 1
SHMT2-223ENST00000556689 RAPGEF6Q8TEU7 1601 aa21.31■■□□□ 1
SHMT2-223ENST00000556689 FBXO41Q8TF61 875 aa21.31■■□□□ 1
SHMT2-223ENST00000556689 NUP153P49790 1475 aaKnown RBP21.28■■□□□ 1
SHMT2-223ENST00000556689 ADAMTSL3P82987 1691 aa21.28■■□□□ 1
SHMT2-223ENST00000556689 FHOD3Q2V2M9 1422 aa21.25■□□□□ 0.99
SHMT2-223ENST00000556689 EEA1Q15075 1411 aa21.23■□□□□ 0.99
SHMT2-223ENST00000556689 DENND4BO75064 1496 aaPredicted RBP21.23■□□□□ 0.99
SHMT2-223ENST00000556689 AKNAQ7Z591 1439 aa21.22■□□□□ 0.99
SHMT2-223ENST00000556689 FRMPD1Q5SYB0 1578 aa21.2■□□□□ 0.98
SHMT2-223ENST00000556689 BCORL1Q5H9F3 1711 aa21.19■□□□□ 0.98
SHMT2-223ENST00000556689 FANCAO15360 1455 aa21.18■□□□□ 0.98
SHMT2-223ENST00000556689 MADDQ8WXG6 1647 aa21.15■□□□□ 0.98
SHMT2-223ENST00000556689 PCF11O94913 1555 aaKnown RBP21.14■□□□□ 0.98
SHMT2-223ENST00000556689 POGZQ7Z3K3 1410 aa21.14■□□□□ 0.98
SHMT2-223ENST00000556689 PLPPR3Q6T4P5 718 aa21.14■□□□□ 0.97
SHMT2-223ENST00000556689 LMTK3Q96Q04 1460 aa21.13■□□□□ 0.97
SHMT2-223ENST00000556689 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.13■□□□□ 0.97
SHMT2-223ENST00000556689 ARHGEF40Q8TER5 1519 aa21.11■□□□□ 0.97
SHMT2-223ENST00000556689 HSPA2P54652 639 aa21.11■□□□□ 0.97
SHMT2-223ENST00000556689 MLECQ14165 292 aa21.1■□□□□ 0.97
SHMT2-223ENST00000556689 ATP1B4Q9UN42 357 aaPredicted RBP21.09■□□□□ 0.97
SHMT2-223ENST00000556689 CFAP74Q9C0B2 1584 aa21.09■□□□□ 0.97
SHMT2-223ENST00000556689 RICTORQ6R327 1708 aa21.09■□□□□ 0.97
SHMT2-223ENST00000556689 EFCAB5A4FU69 1503 aa21.09■□□□□ 0.97
SHMT2-223ENST00000556689 MAGI2Q86UL8 1455 aa21.08■□□□□ 0.97
SHMT2-223ENST00000556689 YEATS2Q9ULM3 1422 aa21.08■□□□□ 0.97
SHMT2-223ENST00000556689 PLCH2O75038 1416 aa21.06■□□□□ 0.96
SHMT2-223ENST00000556689 SCAPERQ9BY12 1400 aa21.06■□□□□ 0.96
SHMT2-223ENST00000556689 RIMS1Q86UR5 1692 aaKnown RBP21.05■□□□□ 0.96
SHMT2-223ENST00000556689 ZMYM4Q5VZL5 1548 aa21.05■□□□□ 0.96
SHMT2-223ENST00000556689 ZFYVE16Q7Z3T8 1539 aa21.05■□□□□ 0.96
SHMT2-223ENST00000556689 UBTFP17480 764 aaKnown RBP21.05■□□□□ 0.96
SHMT2-223ENST00000556689 EFCAB2Q5VUJ9 269 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms