RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 SLC39A7Q92504 469 aa5.09□□□□□ -1.59
PRPF39-208ENST00000554785 ST18O60284 1047 aa5.09□□□□□ -1.59
PRPF39-208ENST00000554785 STAG3Q9UJ98 1225 aa5.08□□□□□ -1.6
PRPF39-208ENST00000554785 FARP1Q9Y4F1 1045 aaPredicted RBP5.05□□□□□ -1.6
PRPF39-208ENST00000554785 SPDYE4A6NLX3 237 aa5.02□□□□□ -1.61
PRPF39-208ENST00000554785 ZRANB1Q9UGI0 708 aa5.01□□□□□ -1.61
PRPF39-208ENST00000554785 PAK3O75914 559 aaPredicted RBP5□□□□□ -1.61
PRPF39-208ENST00000554785 TMEM121BQ9BXQ6 578 aaPredicted RBP4.99□□□□□ -1.61
PRPF39-208ENST00000554785 NPM1P06748 294 aaKnown RBP eCLIP4.97□□□□□ -1.61
PRPF39-208ENST00000554785 ASTLQ6HA08 431 aaPredicted RBP4.96□□□□□ -1.62
PRPF39-208ENST00000554785 PROM2Q8N271 834 aa4.93□□□□□ -1.62
PRPF39-208ENST00000554785 CREBZFQ9NS37 354 aa4.93□□□□□ -1.62
PRPF39-208ENST00000554785 ATMINO43313 823 aaPredicted RBP4.92□□□□□ -1.62
PRPF39-208ENST00000554785 FKBP8Q14318 412 aa4.91□□□□□ -1.62
PRPF39-208ENST00000554785 RNF166Q96A37 237 aaPredicted RBP4.91□□□□□ -1.62
PRPF39-208ENST00000554785 KRTAP3-3Q9BYR6 98 aa4.91□□□□□ -1.62
PRPF39-208ENST00000554785 KRTAP3-2Q9BYR7 98 aa4.91□□□□□ -1.62
PRPF39-208ENST00000554785 SLAIN1Q8ND83 568 aa4.85□□□□□ -1.63
PRPF39-208ENST00000554785 LOC100996750A0A140TA64 210 aa4.84□□□□□ -1.63
PRPF39-208ENST00000554785 KRTAP4-6Q9BYQ5 205 aa4.84□□□□□ -1.63
PRPF39-208ENST00000554785 PLEKHG5O94827 1062 aa4.84□□□□□ -1.64
PRPF39-208ENST00000554785 MNX1P50219 401 aaPredicted RBP4.84□□□□□ -1.64
PRPF39-208ENST00000554785 MARVELD3Q96A59 401 aa4.84□□□□□ -1.64
PRPF39-208ENST00000554785 POTEFA5A3E0 1075 aa4.82□□□□□ -1.64
PRPF39-208ENST00000554785 SNPHO15079 494 aa4.82□□□□□ -1.64
PRPF39-208ENST00000554785 PHF12Q96QT6 1004 aa4.81□□□□□ -1.64
PRPF39-208ENST00000554785 MIER1Q8N108 512 aa4.77□□□□□ -1.65
PRPF39-208ENST00000554785 MYT1LQ9UL68 1186 aa4.77□□□□□ -1.65
PRPF39-208ENST00000554785 MS4A3Q96HJ5 214 aa4.76□□□□□ -1.65
PRPF39-208ENST00000554785 SGIP1Q9BQI5 828 aa4.76□□□□□ -1.65
PRPF39-208ENST00000554785 TIE1P35590 1138 aa4.76□□□□□ -1.65
PRPF39-208ENST00000554785 ZBTB47Q9UFB7 747 aaPredicted RBP4.76□□□□□ -1.65
PRPF39-208ENST00000554785 EMP3P54852 163 aa4.75□□□□□ -1.65
PRPF39-208ENST00000554785 ATN1P54259 1190 aaPredicted RBP4.75□□□□□ -1.65
PRPF39-208ENST00000554785 HS3ST6Q96QI5 342 aa4.75□□□□□ -1.65
PRPF39-208ENST00000554785 CCDC61Q9Y6R9 512 aa4.74□□□□□ -1.65
PRPF39-208ENST00000554785 PLCD3Q8N3E9 789 aa4.73□□□□□ -1.65
PRPF39-208ENST00000554785 KIF12Q96FN5 646 aa4.73□□□□□ -1.65
PRPF39-208ENST00000554785 IER5LQ5T953 404 aa4.73□□□□□ -1.65
PRPF39-208ENST00000554785 POTEB3A0JP26 581 aa4.72□□□□□ -1.65
PRPF39-208ENST00000554785 POTEBQ6S5H4 581 aa4.72□□□□□ -1.65
PRPF39-208ENST00000554785 RASEFQ8IZ41 740 aa4.72□□□□□ -1.65
PRPF39-208ENST00000554785 TSPYL2Q9H2G4 693 aaPredicted RBP4.72□□□□□ -1.65
PRPF39-208ENST00000554785 PLA2G2EQ9NZK7 142 aa4.72□□□□□ -1.65
PRPF39-208ENST00000554785 IRX2Q9BZI1 471 aaPredicted RBP4.71□□□□□ -1.66
PRPF39-208ENST00000554785 SEC24BO95487 1268 aa4.7□□□□□ -1.66
PRPF39-208ENST00000554785 FBXO3Q9UK99 471 aa4.7□□□□□ -1.66
PRPF39-208ENST00000554785 VASPP50552 380 aaPredicted RBP4.69□□□□□ -1.66
PRPF39-208ENST00000554785 NUBP1P53384 320 aa4.69□□□□□ -1.66
PRPF39-208ENST00000554785 FAM205CA6NFA0 338 aa4.69□□□□□ -1.66
PRPF39-208ENST00000554785 BMP2KQ9NSY1 1161 aaPredicted RBP4.69□□□□□ -1.66
PRPF39-208ENST00000554785 COLQQ9Y215 455 aaPredicted RBP4.67□□□□□ -1.66
PRPF39-208ENST00000554785 IFNLR1Q8IU57 520 aaPredicted RBP4.66□□□□□ -1.66
PRPF39-208ENST00000554785 MAP3K13O43283 966 aa4.66□□□□□ -1.66
PRPF39-208ENST00000554785 TTLL13PA6NNM8 815 aa4.65□□□□□ -1.67
PRPF39-208ENST00000554785 PTGER2P43116 358 aa4.64□□□□□ -1.67
PRPF39-208ENST00000554785 TRPC6Q9Y210 931 aa4.64□□□□□ -1.67
PRPF39-208ENST00000554785 RGS20O76081 388 aa4.63□□□□□ -1.67
PRPF39-208ENST00000554785 FAM212AQ96EL1 285 aa4.63□□□□□ -1.67
PRPF39-208ENST00000554785 PCDHB13Q9Y5F0 798 aa4.63□□□□□ -1.67
PRPF39-208ENST00000554785 KLHL34Q8N239 644 aa4.63□□□□□ -1.67
PRPF39-208ENST00000554785 PLCG2P16885 1265 aa4.62□□□□□ -1.67
PRPF39-208ENST00000554785 TRIM35Q9UPQ4 493 aa4.62□□□□□ -1.67
PRPF39-208ENST00000554785 DCAF8Q5TAQ9 597 aa4.6□□□□□ -1.67
PRPF39-208ENST00000554785 PYGBP11216 843 aa4.6□□□□□ -1.67
PRPF39-208ENST00000554785 IFNL1Q8IU54 200 aa4.58□□□□□ -1.68
PRPF39-208ENST00000554785 TMEM106CQ9BVX2 250 aa4.58□□□□□ -1.68
PRPF39-208ENST00000554785 OCEL1Q9H607 264 aa4.58□□□□□ -1.68
PRPF39-208ENST00000554785 SPOCK2Q92563 424 aa4.57□□□□□ -1.68
PRPF39-208ENST00000554785 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.57□□□□□ -1.68
PRPF39-208ENST00000554785 IRX5P78411 483 aaPredicted RBP4.56□□□□□ -1.68
PRPF39-208ENST00000554785 PCDHB8Q9UN66 801 aa4.56□□□□□ -1.68
PRPF39-208ENST00000554785 L3MBTL3Q96JM7 780 aaPredicted RBP4.55□□□□□ -1.68
PRPF39-208ENST00000554785 GSE1Q14687 1217 aa4.54□□□□□ -1.68
PRPF39-208ENST00000554785 ZNF467Q7Z7K2 595 aaPredicted RBP4.54□□□□□ -1.68
PRPF39-208ENST00000554785 CIZ1Q9ULV3 898 aaPredicted RBP4.54□□□□□ -1.68
PRPF39-208ENST00000554785 CHRM1P11229 460 aaPredicted RBP4.51□□□□□ -1.69
PRPF39-208ENST00000554785 GOLGA2Q08379 1002 aa4.51□□□□□ -1.69
PRPF39-208ENST00000554785 Q6ZNB5 142 aa4.51□□□□□ -1.69
PRPF39-208ENST00000554785 C3orf67Q6ZVT6 689 aa4.51□□□□□ -1.69
PRPF39-208ENST00000554785 MKRN3Q13064 507 aaKnown RBP4.5□□□□□ -1.69
PRPF39-208ENST00000554785 RNF25Q96BH1 459 aaPredicted RBP4.48□□□□□ -1.69
PRPF39-208ENST00000554785 HCSTQ9UBK5 93 aa4.48□□□□□ -1.69
PRPF39-208ENST00000554785 G3V3G9 751 aa4.46□□□□□ -1.7
PRPF39-208ENST00000554785 PSEN1P49768 467 aa4.46□□□□□ -1.7
PRPF39-208ENST00000554785 PKD2Q13563 968 aa4.45□□□□□ -1.7
PRPF39-208ENST00000554785 PDCD7Q8N8D1 485 aaKnown RBP4.44□□□□□ -1.7
PRPF39-208ENST00000554785 PDAP1Q13442 181 aaKnown RBP4.43□□□□□ -1.7
PRPF39-208ENST00000554785 XP32Q5T750 250 aa4.43□□□□□ -1.7
PRPF39-208ENST00000554785 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.43□□□□□ -1.72e-7■■■■□ 20.6
PRPF39-208ENST00000554785 ILDR1Q86SU0 546 aaPredicted RBP4.43□□□□□ -1.7
PRPF39-208ENST00000554785 ERBB3P21860 1342 aa4.42□□□□□ -1.7
PRPF39-208ENST00000554785 TRIM41Q8WV44 630 aa4.42□□□□□ -1.7
PRPF39-208ENST00000554785 CABP2Q9NPB3 220 aa4.42□□□□□ -1.7
PRPF39-208ENST00000554785 RIMBP2O15034 1052 aa4.42□□□□□ -1.7
PRPF39-208ENST00000554785 RIOK3O14730 519 aaKnown RBP4.41□□□□□ -1.7
PRPF39-208ENST00000554785 DOK7Q18PE1 504 aa4.41□□□□□ -1.7
PRPF39-208ENST00000554785 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.4□□□□□ -1.7
PRPF39-208ENST00000554785 RGL2O15211 777 aa4.4□□□□□ -1.7
PRPF39-208ENST00000554785 DPY19L2Q6NUT2 758 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms