RNA–Protein interactions for RNA: ENST00000553693.5

SCFD1-210, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-210ENST00000553693 SPDYE4A6NLX3 237 aa13.85□□□□□ -0.19
SCFD1-210ENST00000553693 ATMINO43313 823 aaPredicted RBP13.84□□□□□ -0.19
SCFD1-210ENST00000553693 C7P10643 843 aa13.83□□□□□ -0.2
SCFD1-210ENST00000553693 MNX1P50219 401 aaPredicted RBP13.82□□□□□ -0.2
SCFD1-210ENST00000553693 SLC39A7Q92504 469 aa13.82□□□□□ -0.2
SCFD1-210ENST00000553693 MS4A3Q96HJ5 214 aa13.82□□□□□ -0.2
SCFD1-210ENST00000553693 MAMSTRQ6ZN01 415 aa13.79□□□□□ -0.2
SCFD1-210ENST00000553693 FAM163AQ96GL9 167 aaPredicted RBP13.78□□□□□ -0.2
SCFD1-210ENST00000553693 NPM1P06748 294 aaKnown RBP eCLIP13.73□□□□□ -0.21
SCFD1-210ENST00000553693 SCUBE2Q9NQ36 999 aa13.68□□□□□ -0.22
SCFD1-210ENST00000553693 POTEFA5A3E0 1075 aa13.67□□□□□ -0.22
SCFD1-210ENST00000553693 ATN1P54259 1190 aaPredicted RBP13.67□□□□□ -0.22
SCFD1-210ENST00000553693 FKBP8Q14318 412 aa13.56□□□□□ -0.24
SCFD1-210ENST00000553693 CDAN1Q8IWY9 1227 aa13.56□□□□□ -0.24
SCFD1-210ENST00000553693 PROM2Q8N271 834 aa13.56□□□□□ -0.24
SCFD1-210ENST00000553693 CCDC61Q9Y6R9 512 aa13.54□□□□□ -0.24
SCFD1-210ENST00000553693 BMP2KQ9NSY1 1161 aaPredicted RBP13.53□□□□□ -0.24
SCFD1-210ENST00000553693 TRPC6Q9Y210 931 aa13.53□□□□□ -0.24
SCFD1-210ENST00000553693 TSPYL2Q9H2G4 693 aaPredicted RBP13.52□□□□□ -0.25
SCFD1-210ENST00000553693 KIF12Q96FN5 646 aa13.5□□□□□ -0.25
SCFD1-210ENST00000553693 COLQQ9Y215 455 aaPredicted RBP13.46□□□□□ -0.25
SCFD1-210ENST00000553693 TIE1P35590 1138 aa13.41□□□□□ -0.26
SCFD1-210ENST00000553693 MAP3K13O43283 966 aa13.37□□□□□ -0.27
SCFD1-210ENST00000553693 ST18O60284 1047 aa13.35□□□□□ -0.27
SCFD1-210ENST00000553693 TTLL13PA6NNM8 815 aa13.34□□□□□ -0.27
SCFD1-210ENST00000553693 SEC24BO95487 1268 aa13.33□□□□□ -0.28
SCFD1-210ENST00000553693 MMRN1Q13201 1228 aa13.31□□□□□ -0.28
SCFD1-210ENST00000553693 SPNS2Q8IVW8 549 aa13.27□□□□□ -0.29
SCFD1-210ENST00000553693 SLAIN1Q8ND83 568 aa13.26□□□□□ -0.29
SCFD1-210ENST00000553693 IER5LQ5T953 404 aa13.25□□□□□ -0.29
SCFD1-210ENST00000553693 RASEFQ8IZ41 740 aa13.24□□□□□ -0.29
SCFD1-210ENST00000553693 FBXO3Q9UK99 471 aa13.24□□□□□ -0.29
SCFD1-210ENST00000553693 TRIM35Q9UPQ4 493 aa13.24□□□□□ -0.29
SCFD1-210ENST00000553693 PLEKHG5O94827 1062 aa13.21□□□□□ -0.29
SCFD1-210ENST00000553693 MIER1Q8N108 512 aa13.15□□□□□ -0.3
SCFD1-210ENST00000553693 PLCD3Q8N3E9 789 aa13.13□□□□□ -0.31
SCFD1-210ENST00000553693 SGIP1Q9BQI5 828 aa13.12□□□□□ -0.31
SCFD1-210ENST00000553693 TMEM121BQ9BXQ6 578 aaPredicted RBP13.11□□□□□ -0.31
SCFD1-210ENST00000553693 PCDHB13Q9Y5F0 798 aa13.09□□□□□ -0.31
SCFD1-210ENST00000553693 ZBTB47Q9UFB7 747 aaPredicted RBP13.07□□□□□ -0.32
SCFD1-210ENST00000553693 IRX5P78411 483 aaPredicted RBP13.06□□□□□ -0.32
SCFD1-210ENST00000553693 IFNL1Q8IU54 200 aa13.05□□□□□ -0.32
SCFD1-210ENST00000553693 MARVELD3Q96A59 401 aa13.05□□□□□ -0.32
SCFD1-210ENST00000553693 PLCG2P16885 1265 aa13.04□□□□□ -0.32
SCFD1-210ENST00000553693 VASPP50552 380 aaPredicted RBP13.02□□□□□ -0.33
SCFD1-210ENST00000553693 TMEM106CQ9BVX2 250 aa13.02□□□□□ -0.33
SCFD1-210ENST00000553693 SNPHO15079 494 aa12.96□□□□□ -0.33
SCFD1-210ENST00000553693 NUBP1P53384 320 aa12.93□□□□□ -0.34
SCFD1-210ENST00000553693 KRTAP3-3Q9BYR6 98 aa12.92□□□□□ -0.34
SCFD1-210ENST00000553693 KRTAP3-2Q9BYR7 98 aa12.92□□□□□ -0.34
SCFD1-210ENST00000553693 OCEL1Q9H607 264 aa12.92□□□□□ -0.34
SCFD1-210ENST00000553693 POTEB3A0JP26 581 aa12.9□□□□□ -0.34
SCFD1-210ENST00000553693 POTEBQ6S5H4 581 aa12.9□□□□□ -0.34
SCFD1-210ENST00000553693 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.9□□□□□ -0.34
SCFD1-210ENST00000553693 KLHL34Q8N239 644 aa12.88□□□□□ -0.35
SCFD1-210ENST00000553693 EMP3P54852 163 aa12.84□□□□□ -0.35
SCFD1-210ENST00000553693 FAM212AQ96EL1 285 aa12.82□□□□□ -0.36
SCFD1-210ENST00000553693 HS3ST6Q96QI5 342 aa12.82□□□□□ -0.36
SCFD1-210ENST00000553693 FAM205CA6NFA0 338 aa12.76□□□□□ -0.37
SCFD1-210ENST00000553693 IFNLR1Q8IU57 520 aaPredicted RBP12.76□□□□□ -0.37
SCFD1-210ENST00000553693 PDCD7Q8N8D1 485 aaKnown RBP12.75□□□□□ -0.37
SCFD1-210ENST00000553693 SPOCK2Q92563 424 aa12.73□□□□□ -0.37
SCFD1-210ENST00000553693 DCAF8Q5TAQ9 597 aa12.69□□□□□ -0.38
SCFD1-210ENST00000553693 GSE1Q14687 1217 aa12.68□□□□□ -0.38
SCFD1-210ENST00000553693 C3orf67Q6ZVT6 689 aa12.68□□□□□ -0.38
SCFD1-210ENST00000553693 PCDHB8Q9UN66 801 aa12.68□□□□□ -0.38
SCFD1-210ENST00000553693 PYGBP11216 843 aa12.66□□□□□ -0.38
SCFD1-210ENST00000553693 L3MBTL3Q96JM7 780 aaPredicted RBP12.62□□□□□ -0.39
SCFD1-210ENST00000553693 CIZ1Q9ULV3 898 aaPredicted RBP12.56□□□□□ -0.4
SCFD1-210ENST00000553693 HOXB3P14651 431 aaPredicted RBP12.55□□□□□ -0.4
SCFD1-210ENST00000553693 RNF166Q96A37 237 aaPredicted RBP12.54□□□□□ -0.4
SCFD1-210ENST00000553693 MKRN3Q13064 507 aaKnown RBP12.52□□□□□ -0.41
SCFD1-210ENST00000553693 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.51□□□□□ -0.412e-10■■■□□ 15.2
SCFD1-210ENST00000553693 CHRM1P11229 460 aaPredicted RBP12.5□□□□□ -0.41
SCFD1-210ENST00000553693 ILDR1Q86SU0 546 aaPredicted RBP12.5□□□□□ -0.41
SCFD1-210ENST00000553693 TRIM41Q8WV44 630 aa12.5□□□□□ -0.41
SCFD1-210ENST00000553693 HOXB1P14653 301 aaPredicted RBP12.49□□□□□ -0.41
SCFD1-210ENST00000553693 GOLGA2Q08379 1002 aa12.46□□□□□ -0.41
SCFD1-210ENST00000553693 DPY19L2Q6NUT2 758 aa12.46□□□□□ -0.41
SCFD1-210ENST00000553693 ZNF467Q7Z7K2 595 aaPredicted RBP12.46□□□□□ -0.41
SCFD1-210ENST00000553693 ERBB3P21860 1342 aa12.42□□□□□ -0.42
SCFD1-210ENST00000553693 MYT1LQ9UL68 1186 aa12.42□□□□□ -0.42
SCFD1-210ENST00000553693 PSEN1P49768 467 aa12.37□□□□□ -0.43
SCFD1-210ENST00000553693 ZNF710Q8N1W2 664 aa12.37□□□□□ -0.43
SCFD1-210ENST00000553693 VARS2Q5ST30 1063 aaKnown RBP12.35□□□□□ -0.43
SCFD1-210ENST00000553693 BOLA1Q9Y3E2 137 aa12.35□□□□□ -0.43
SCFD1-210ENST00000553693 DOK7Q18PE1 504 aa12.33□□□□□ -0.44
SCFD1-210ENST00000553693 PDAP1Q13442 181 aaKnown RBP12.31□□□□□ -0.44
SCFD1-210ENST00000553693 ZNF687Q8N1G0 1237 aa12.29□□□□□ -0.44
SCFD1-210ENST00000553693 RIOK3O14730 519 aaKnown RBP12.26□□□□□ -0.45
SCFD1-210ENST00000553693 G3V3G9 751 aa12.25□□□□□ -0.45
SCFD1-210ENST00000553693 ECM2O94769 699 aaPredicted RBP12.24□□□□□ -0.45
SCFD1-210ENST00000553693 PTGER2P43116 358 aa12.23□□□□□ -0.45
SCFD1-210ENST00000553693 CABP2Q9NPB3 220 aa12.23□□□□□ -0.45
SCFD1-210ENST00000553693 PKD2Q13563 968 aa12.22□□□□□ -0.45
SCFD1-210ENST00000553693 TAOK2Q9UL54 1235 aa12.22□□□□□ -0.45
SCFD1-210ENST00000553693 RIMBP2O15034 1052 aa12.21□□□□□ -0.45
SCFD1-210ENST00000553693 RNF25Q96BH1 459 aaPredicted RBP12.21□□□□□ -0.45
SCFD1-210ENST00000553693 VGFO15240 615 aaPredicted RBP12.19□□□□□ -0.46
SCFD1-210ENST00000553693 GPR153Q6NV75 609 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 129.8 ms