RNA–Protein interactions for RNA: ENST00000547310.1

LGR5-204, Transcript of leucine rich repeat containing G protein-coupled receptor 5, human

TSL 3

Gene LGR5, Length 576 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LGR5-204	ENST00000547310	NPM1	P06748	294 aa	Known RBP eCLIP	15.46	■□□□□ 0.07
LGR5-204	ENST00000547310	LCE2D	Q5TA82	110 aa	Predicted RBP	15.46	■□□□□ 0.07
LGR5-204	ENST00000547310	ATMIN	O43313	823 aa	Predicted RBP	15.43	■□□□□ 0.06
LGR5-204	ENST00000547310	EHMT2	Q96KQ7	1210 aa		15.4	■□□□□ 0.06
LGR5-204	ENST00000547310	MNX1	P50219	401 aa	Predicted RBP	15.39	■□□□□ 0.05
LGR5-204	ENST00000547310	FAM163A	Q96GL9	167 aa	Predicted RBP	15.37	■□□□□ 0.05
LGR5-204	ENST00000547310	MS4A3	Q96HJ5	214 aa		15.36	■□□□□ 0.05
LGR5-204	ENST00000547310	SCUBE2	Q9NQ36	999 aa		15.34	■□□□□ 0.05
LGR5-204	ENST00000547310	CSRNP3	Q8WYN3	585 aa		15.32	■□□□□ 0.04
LGR5-204	ENST00000547310	ATN1	P54259	1190 aa	Predicted RBP	15.21	■□□□□ 0.03
LGR5-204	ENST00000547310	SPDYE4	A6NLX3	237 aa		15.18	■□□□□ 0.02
LGR5-204	ENST00000547310	POTEF	A5A3E0	1075 aa		15.16	■□□□□ 0.02
LGR5-204	ENST00000547310	CDAN1	Q8IWY9	1227 aa		15.13	■□□□□ 0.01
LGR5-204	ENST00000547310	CCDC61	Q9Y6R9	512 aa		15.1	■□□□□ 0.01
LGR5-204	ENST00000547310	KIF12	Q96FN5	646 aa		15.07	■□□□□ 0
LGR5-204	ENST00000547310	BMP2K	Q9NSY1	1161 aa	Predicted RBP	15.07	■□□□□ 0
LGR5-204	ENST00000547310	TSPYL2	Q9H2G4	693 aa	Predicted RBP	15.05	■□□□□ -0
LGR5-204	ENST00000547310	TIE1	P35590	1138 aa		15.03	■□□□□ -0
LGR5-204	ENST00000547310	TRPC6	Q9Y210	931 aa		14.95	□□□□□ -0.02
LGR5-204	ENST00000547310	COLQ	Q9Y215	455 aa	Predicted RBP	14.95	□□□□□ -0.02
LGR5-204	ENST00000547310	SEC24B	O95487	1268 aa		14.92	□□□□□ -0.02
LGR5-204	ENST00000547310	MAP3K13	O43283	966 aa		14.9	□□□□□ -0.02
LGR5-204	ENST00000547310	IER5L	Q5T953	404 aa		14.89	□□□□□ -0.03
LGR5-204	ENST00000547310	TTLL13P	A6NNM8	815 aa		14.88	□□□□□ -0.03
LGR5-204	ENST00000547310	ST18	O60284	1047 aa		14.88	□□□□□ -0.03
LGR5-204	ENST00000547310	MMRN1	Q13201	1228 aa		14.83	□□□□□ -0.04
LGR5-204	ENST00000547310	SPNS2	Q8IVW8	549 aa		14.8	□□□□□ -0.04
LGR5-204	ENST00000547310	SLAIN1	Q8ND83	568 aa		14.8	□□□□□ -0.04
LGR5-204	ENST00000547310	SGIP1	Q9BQI5	828 aa		14.79	□□□□□ -0.04
LGR5-204	ENST00000547310	PROM2	Q8N271	834 aa		14.77	□□□□□ -0.05
LGR5-204	ENST00000547310	TRIM35	Q9UPQ4	493 aa		14.76	□□□□□ -0.05
LGR5-204	ENST00000547310	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	14.74	□□□□□ -0.05
LGR5-204	ENST00000547310	RASEF	Q8IZ41	740 aa		14.71	□□□□□ -0.05
LGR5-204	ENST00000547310	PLEKHG5	O94827	1062 aa		14.67	□□□□□ -0.06
LGR5-204	ENST00000547310	PCDHB13	Q9Y5F0	798 aa		14.63	□□□□□ -0.07
LGR5-204	ENST00000547310	SNPH	O15079	494 aa		14.61	□□□□□ -0.07
LGR5-204	ENST00000547310	PLCG2	P16885	1265 aa		14.6	□□□□□ -0.07
LGR5-204	ENST00000547310	MIER1	Q8N108	512 aa		14.58	□□□□□ -0.08
LGR5-204	ENST00000547310	IRX5	P78411	483 aa	Predicted RBP	14.57	□□□□□ -0.08
LGR5-204	ENST00000547310	IFNL1	Q8IU54	200 aa		14.53	□□□□□ -0.08
LGR5-204	ENST00000547310	TMEM106C	Q9BVX2	250 aa		14.52	□□□□□ -0.09
LGR5-204	ENST00000547310	OCEL1	Q9H607	264 aa		14.48	□□□□□ -0.09
LGR5-204	ENST00000547310	MARVELD3	Q96A59	401 aa		14.47	□□□□□ -0.09
LGR5-204	ENST00000547310	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	14.46	□□□□□ -0.09
LGR5-204	ENST00000547310	NUBP1	P53384	320 aa		14.42	□□□□□ -0.1
LGR5-204	ENST00000547310	ZBTB47	Q9UFB7	747 aa	Predicted RBP	14.38	□□□□□ -0.11
LGR5-204	ENST00000547310	KRTAP3-3	Q9BYR6	98 aa		14.35	□□□□□ -0.11
LGR5-204	ENST00000547310	KRTAP3-2	Q9BYR7	98 aa		14.35	□□□□□ -0.11
LGR5-204	ENST00000547310	PLCD3	Q8N3E9	789 aa		14.34	□□□□□ -0.11
LGR5-204	ENST00000547310	EMP3	P54852	163 aa		14.32	□□□□□ -0.12
LGR5-204	ENST00000547310	FAM212A	Q96EL1	285 aa		14.31	□□□□□ -0.12
LGR5-204	ENST00000547310	POTEB3	A0JP26	581 aa		14.28	□□□□□ -0.12
LGR5-204	ENST00000547310	POTEB	Q6S5H4	581 aa		14.28	□□□□□ -0.12
LGR5-204	ENST00000547310	HS3ST6	Q96QI5	342 aa		14.28	□□□□□ -0.12
LGR5-204	ENST00000547310	FAM205C	A6NFA0	338 aa		14.22	□□□□□ -0.13
LGR5-204	ENST00000547310	L3MBTL3	Q96JM7	780 aa	Predicted RBP	14.2	□□□□□ -0.14
LGR5-204	ENST00000547310	C3orf67	Q6ZVT6	689 aa		14.19	□□□□□ -0.14
LGR5-204	ENST00000547310	PDCD7	Q8N8D1	485 aa	Known RBP	14.19	□□□□□ -0.14
LGR5-204	ENST00000547310	PYGB	P11216	843 aa		14.09	□□□□□ -0.15
LGR5-204	ENST00000547310	PCDHB8	Q9UN66	801 aa		14.09	□□□□□ -0.15
LGR5-204	ENST00000547310	DCAF8	Q5TAQ9	597 aa		14.06	□□□□□ -0.16
LGR5-204	ENST00000547310	MKRN3	Q13064	507 aa	Known RBP	14.04	□□□□□ -0.16
LGR5-204	ENST00000547310	RNF166	Q96A37	237 aa	Predicted RBP	14.01	□□□□□ -0.17
LGR5-204	ENST00000547310	GOLGA2	Q08379	1002 aa		13.99	□□□□□ -0.17
LGR5-204	ENST00000547310	ILDR1	Q86SU0	546 aa	Predicted RBP	13.99	□□□□□ -0.17
LGR5-204	ENST00000547310	HOXB1	P14653	301 aa	Predicted RBP	13.98	□□□□□ -0.17
LGR5-204	ENST00000547310	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.98	□□□□□ -0.17	1e-9	■■□□□ 12.5
LGR5-204	ENST00000547310	HOXB3	P14651	431 aa	Predicted RBP	13.97	□□□□□ -0.17
LGR5-204	ENST00000547310	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.96	□□□□□ -0.17
LGR5-204	ENST00000547310	ERBB3	P21860	1342 aa		13.9	□□□□□ -0.19
LGR5-204	ENST00000547310	MYT1L	Q9UL68	1186 aa		13.89	□□□□□ -0.19
LGR5-204	ENST00000547310	ZNF710	Q8N1W2	664 aa		13.87	□□□□□ -0.19
LGR5-204	ENST00000547310	CHRM1	P11229	460 aa	Predicted RBP	13.86	□□□□□ -0.19
LGR5-204	ENST00000547310	DOK7	Q18PE1	504 aa		13.84	□□□□□ -0.19
LGR5-204	ENST00000547310	PSEN1	P49768	467 aa		13.82	□□□□□ -0.2
LGR5-204	ENST00000547310	DPY19L2	Q6NUT2	758 aa		13.82	□□□□□ -0.2
LGR5-204	ENST00000547310	BOLA1	Q9Y3E2	137 aa		13.82	□□□□□ -0.2
LGR5-204	ENST00000547310	GSE1	Q14687	1217 aa		13.81	□□□□□ -0.2
LGR5-204	ENST00000547310	PTGER2	P43116	358 aa		13.8	□□□□□ -0.2
LGR5-204	ENST00000547310		G3V3G9	751 aa		13.78	□□□□□ -0.2
LGR5-204	ENST00000547310	FKBP8	Q14318	412 aa		13.78	□□□□□ -0.2
LGR5-204	ENST00000547310	ZNF687	Q8N1G0	1237 aa		13.77	□□□□□ -0.21
LGR5-204	ENST00000547310	VARS2	Q5ST30	1063 aa	Known RBP	13.76	□□□□□ -0.21
LGR5-204	ENST00000547310	RIMBP2	O15034	1052 aa		13.75	□□□□□ -0.21
LGR5-204	ENST00000547310	ZSWIM6	Q9HCJ5	1215 aa		13.72	□□□□□ -0.21
LGR5-204	ENST00000547310	PDAP1	Q13442	181 aa	Known RBP	13.7	□□□□□ -0.22
LGR5-204	ENST00000547310	CABP2	Q9NPB3	220 aa		13.62	□□□□□ -0.23
LGR5-204	ENST00000547310	GPR153	Q6NV75	609 aa		13.61	□□□□□ -0.23
LGR5-204	ENST00000547310	FBXO3	Q9UK99	471 aa		13.6	□□□□□ -0.23
LGR5-204	ENST00000547310	ANKRD13D	Q6ZTN6	518 aa		13.53	□□□□□ -0.24
LGR5-204	ENST00000547310	KLHL34	Q8N239	644 aa		13.53	□□□□□ -0.24
LGR5-204	ENST00000547310	TMEM92	Q6UXU6	159 aa		13.49	□□□□□ -0.25
LGR5-204	ENST00000547310	PLA2G2E	Q9NZK7	142 aa		13.48	□□□□□ -0.25
LGR5-204	ENST00000547310	LSM11	P83369	360 aa	Known RBP eCLIP	13.46	□□□□□ -0.25
LGR5-204	ENST00000547310	MICALL2	Q8IY33	904 aa		13.43	□□□□□ -0.26
LGR5-204	ENST00000547310	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.41	□□□□□ -0.26
LGR5-204	ENST00000547310	VASP	P50552	380 aa	Predicted RBP	13.4	□□□□□ -0.26
LGR5-204	ENST00000547310	ARSI	Q5FYB1	569 aa		13.4	□□□□□ -0.26
LGR5-204	ENST00000547310	HCST	Q9UBK5	93 aa		13.4	□□□□□ -0.26
LGR5-204	ENST00000547310	EFCAB3	Q8N7B9	438 aa		13.39	□□□□□ -0.27

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