RNA–Protein interactions for RNA: ENST00000544154.1

NPIPB3-213, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 5

Gene NPIPB3, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-213ENST00000544154 PABPN1Q86U42 306 aaKnown RBP eCLIP8.22□□□□□ -1.09
NPIPB3-213ENST00000544154 ST18O60284 1047 aa8.18□□□□□ -1.1
NPIPB3-213ENST00000544154 MS4A3Q96HJ5 214 aa8.11□□□□□ -1.11
NPIPB3-213ENST00000544154 CREBZFQ9NS37 354 aa8.11□□□□□ -1.11
NPIPB3-213ENST00000544154 ATN1P54259 1190 aaPredicted RBP8.09□□□□□ -1.11
NPIPB3-213ENST00000544154 FOXD4L1Q9NU39 408 aa8.08□□□□□ -1.12
NPIPB3-213ENST00000544154 PAK3O75914 559 aaPredicted RBP8□□□□□ -1.13
NPIPB3-213ENST00000544154 COLQQ9Y215 455 aaPredicted RBP7.99□□□□□ -1.13
NPIPB3-213ENST00000544154 KRTAP3-3Q9BYR6 98 aa7.95□□□□□ -1.14
NPIPB3-213ENST00000544154 KRTAP3-2Q9BYR7 98 aa7.95□□□□□ -1.14
NPIPB3-213ENST00000544154 SLAIN1Q8ND83 568 aa7.94□□□□□ -1.14
NPIPB3-213ENST00000544154 TMEM121BQ9BXQ6 578 aaPredicted RBP7.93□□□□□ -1.14
NPIPB3-213ENST00000544154 ATXN8OSP0DMR3 200 aa7.92□□□□□ -1.14
NPIPB3-213ENST00000544154 MARVELD3Q96A59 401 aa7.91□□□□□ -1.14
NPIPB3-213ENST00000544154 BMP2KQ9NSY1 1161 aaPredicted RBP7.91□□□□□ -1.14
NPIPB3-213ENST00000544154 TRPC6Q9Y210 931 aa7.89□□□□□ -1.15
NPIPB3-213ENST00000544154 MNX1P50219 401 aaPredicted RBP7.88□□□□□ -1.15
NPIPB3-213ENST00000544154 POTEB3A0JP26 581 aa7.87□□□□□ -1.15
NPIPB3-213ENST00000544154 POTEBQ6S5H4 581 aa7.87□□□□□ -1.15
NPIPB3-213ENST00000544154 SEC24BO95487 1268 aa7.82□□□□□ -1.16
NPIPB3-213ENST00000544154 NPM1P06748 294 aaKnown RBP eCLIP7.78□□□□□ -1.16
NPIPB3-213ENST00000544154 TIE1P35590 1138 aa7.77□□□□□ -1.17
NPIPB3-213ENST00000544154 KIF12Q96FN5 646 aa7.77□□□□□ -1.17
NPIPB3-213ENST00000544154 ZBTB22O15209 634 aa7.76□□□□□ -1.17
NPIPB3-213ENST00000544154 CCDC61Q9Y6R9 512 aa7.76□□□□□ -1.17
NPIPB3-213ENST00000544154 TTLL13PA6NNM8 815 aa7.74□□□□□ -1.17
NPIPB3-213ENST00000544154 HS3ST6Q96QI5 342 aa7.74□□□□□ -1.17
NPIPB3-213ENST00000544154 SNPHO15079 494 aa7.71□□□□□ -1.18
NPIPB3-213ENST00000544154 EMP3P54852 163 aa7.71□□□□□ -1.18
NPIPB3-213ENST00000544154 IER5LQ5T953 404 aa7.71□□□□□ -1.18
NPIPB3-213ENST00000544154 RNF166Q96A37 237 aaPredicted RBP7.7□□□□□ -1.18
NPIPB3-213ENST00000544154 STAG3Q9UJ98 1225 aa7.7□□□□□ -1.18
NPIPB3-213ENST00000544154 FAM205CA6NFA0 338 aa7.67□□□□□ -1.18
NPIPB3-213ENST00000544154 TSPYL2Q9H2G4 693 aaPredicted RBP7.67□□□□□ -1.18
NPIPB3-213ENST00000544154 MAP3K13O43283 966 aa7.66□□□□□ -1.18
NPIPB3-213ENST00000544154 TRIM35Q9UPQ4 493 aa7.66□□□□□ -1.18
NPIPB3-213ENST00000544154 SLC4A1APQ9BWU0 796 aaKnown RBP7.63□□□□□ -1.19
NPIPB3-213ENST00000544154 IRX5P78411 483 aaPredicted RBP7.57□□□□□ -1.2
NPIPB3-213ENST00000544154 MYT1LQ9UL68 1186 aa7.56□□□□□ -1.2
NPIPB3-213ENST00000544154 PLCG2P16885 1265 aa7.54□□□□□ -1.2
NPIPB3-213ENST00000544154 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.54□□□□□ -1.2
NPIPB3-213ENST00000544154 OCEL1Q9H607 264 aa7.44□□□□□ -1.22
NPIPB3-213ENST00000544154 SGIP1Q9BQI5 828 aa7.41□□□□□ -1.22
NPIPB3-213ENST00000544154 TMEM106CQ9BVX2 250 aa7.4□□□□□ -1.22
NPIPB3-213ENST00000544154 PLA2G2EQ9NZK7 142 aa7.4□□□□□ -1.22
NPIPB3-213ENST00000544154 RASEFQ8IZ41 740 aa7.39□□□□□ -1.23
NPIPB3-213ENST00000544154 PCDHB13Q9Y5F0 798 aa7.38□□□□□ -1.23
NPIPB3-213ENST00000544154 IFNL1Q8IU54 200 aa7.37□□□□□ -1.23
NPIPB3-213ENST00000544154 HOXB3P14651 431 aaPredicted RBP7.36□□□□□ -1.23
NPIPB3-213ENST00000544154 HOXB1P14653 301 aaPredicted RBP7.34□□□□□ -1.23
NPIPB3-213ENST00000544154 ERBB3P21860 1342 aa7.33□□□□□ -1.24
NPIPB3-213ENST00000544154 PTGER2P43116 358 aa7.32□□□□□ -1.24
NPIPB3-213ENST00000544154 PDCD7Q8N8D1 485 aaKnown RBP7.3□□□□□ -1.24
NPIPB3-213ENST00000544154 C3orf67Q6ZVT6 689 aa7.29□□□□□ -1.24
NPIPB3-213ENST00000544154 VARS2Q5ST30 1063 aaKnown RBP7.28□□□□□ -1.24
NPIPB3-213ENST00000544154 ZNF687Q8N1G0 1237 aa7.27□□□□□ -1.25
NPIPB3-213ENST00000544154 SPDYE4A6NLX3 237 aa7.23□□□□□ -1.25
NPIPB3-213ENST00000544154 L3MBTL3Q96JM7 780 aaPredicted RBP7.21□□□□□ -1.26
NPIPB3-213ENST00000544154 IRX2Q9BZI1 471 aaPredicted RBP7.21□□□□□ -1.26
NPIPB3-213ENST00000544154 ANKRD13DQ6ZTN6 518 aa7.19□□□□□ -1.26
NPIPB3-213ENST00000544154 ZNF710Q8N1W2 664 aa7.16□□□□□ -1.26
NPIPB3-213ENST00000544154 HCSTQ9UBK5 93 aa7.15□□□□□ -1.26
NPIPB3-213ENST00000544154 DOK7Q18PE1 504 aa7.11□□□□□ -1.27
NPIPB3-213ENST00000544154 RGS20O76081 388 aa7.1□□□□□ -1.27
NPIPB3-213ENST00000544154 LSM11P83369 360 aaKnown RBP eCLIP7.1□□□□□ -1.27
NPIPB3-213ENST00000544154 NUBP1P53384 320 aa7.08□□□□□ -1.28
NPIPB3-213ENST00000544154 GPR153Q6NV75 609 aa7.06□□□□□ -1.28
NPIPB3-213ENST00000544154 ILDR1Q86SU0 546 aaPredicted RBP7.06□□□□□ -1.28
NPIPB3-213ENST00000544154 DPY19L2Q6NUT2 758 aa7.05□□□□□ -1.28
NPIPB3-213ENST00000544154 LCE2BO14633 110 aa7.02□□□□□ -1.29
NPIPB3-213ENST00000544154 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.02□□□□□ -1.29
NPIPB3-213ENST00000544154 PCDHB8Q9UN66 801 aa7.02□□□□□ -1.29
NPIPB3-213ENST00000544154 POTEEQ6S8J3 1075 aa7.01□□□□□ -1.29
NPIPB3-213ENST00000544154 PROM2Q8N271 834 aa7.01□□□□□ -1.29
NPIPB3-213ENST00000544154 RIMBP2O15034 1052 aa7□□□□□ -1.29
NPIPB3-213ENST00000544154 ZSWIM6Q9HCJ5 1215 aa7□□□□□ -1.29
NPIPB3-213ENST00000544154 MIER1Q8N108 512 aa6.99□□□□□ -1.29
NPIPB3-213ENST00000544154 MKRN3Q13064 507 aaKnown RBP6.98□□□□□ -1.29
NPIPB3-213ENST00000544154 Q6ZNB5 142 aa6.98□□□□□ -1.29
NPIPB3-213ENST00000544154 LOC100996750A0A140TA64 210 aa6.97□□□□□ -1.29
NPIPB3-213ENST00000544154 KRTAP4-6Q9BYQ5 205 aa6.97□□□□□ -1.29
NPIPB3-213ENST00000544154 BOLA1Q9Y3E2 137 aa6.96□□□□□ -1.3
NPIPB3-213ENST00000544154 IFFO2Q5TF58 517 aa6.95□□□□□ -1.3
NPIPB3-213ENST00000544154 PLEKHG5O94827 1062 aa6.94□□□□□ -1.3
NPIPB3-213ENST00000544154 ZNF316A6NFI3 1004 aaPredicted RBP6.93□□□□□ -1.3
NPIPB3-213ENST00000544154 A0A0G2JS52 829 aa6.92□□□□□ -1.3
NPIPB3-213ENST00000544154 PYGBP11216 843 aa6.91□□□□□ -1.3
NPIPB3-213ENST00000544154 FAM212AQ96EL1 285 aa6.91□□□□□ -1.3
NPIPB3-213ENST00000544154 ARSIQ5FYB1 569 aa6.9□□□□□ -1.3
NPIPB3-213ENST00000544154 GOLGA2Q08379 1002 aa6.89□□□□□ -1.31
NPIPB3-213ENST00000544154 TMEM92Q6UXU6 159 aa6.89□□□□□ -1.31
NPIPB3-213ENST00000544154 AXIN2Q9Y2T1 843 aa6.89□□□□□ -1.31
NPIPB3-213ENST00000544154 PBX2P40425 430 aa6.88□□□□□ -1.31
NPIPB3-213ENST00000544154 KHSRPQ92945 711 aaKnown RBP eCLIP6.88□□□□□ -1.31
NPIPB3-213ENST00000544154 ADGRD1Q6QNK2 874 aa6.85□□□□□ -1.31
NPIPB3-213ENST00000544154 G3V3G9 751 aa6.83□□□□□ -1.32
NPIPB3-213ENST00000544154 HRO43593 1189 aa6.83□□□□□ -1.32
NPIPB3-213ENST00000544154 DCAF8Q5TAQ9 597 aa6.83□□□□□ -1.32
NPIPB3-213ENST00000544154 TRAF7Q6Q0C0 670 aa6.82□□□□□ -1.32
NPIPB3-213ENST00000544154 KCTD12Q96CX2 325 aaKnown RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms