RNA–Protein interactions for RNA: ENST00000541110.5

TRERF1-205, Transcript of transcriptional regulating factor 1, humanhuman

TSL 1 (best) BASIC

Gene TRERF1, Length 7,646 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1-205ENST00000541110 HNRNPUQ00839 825 aaKnown RBP eCLIP13.27□□□□□ -0.28
TRERF1-205ENST00000541110 TONSLQ96HA7 1378 aa13.27□□□□□ -0.28
TRERF1-205ENST00000541110 PPM1GO15355 546 aaPredicted RBP13.27□□□□□ -0.29
TRERF1-205ENST00000541110 FKBP8Q14318 412 aa13.27□□□□□ -0.29
TRERF1-205ENST00000541110 ISY1Q9ULR0 285 aaKnown RBP13.26□□□□□ -0.29
TRERF1-205ENST00000541110 CCDC136Q96JN2 1154 aa13.24□□□□□ -0.29
TRERF1-205ENST00000541110 NAP1L2Q9ULW6 460 aaPredicted RBP13.23□□□□□ -0.29
TRERF1-205ENST00000541110 CHIC2Q9UKJ5 165 aa13.22□□□□□ -0.29
TRERF1-205ENST00000541110 TRIM44Q96DX7 344 aaPredicted RBP13.22□□□□□ -0.29
TRERF1-205ENST00000541110 CASC1Q6TDU7 716 aa13.22□□□□□ -0.29
TRERF1-205ENST00000541110 PTMAP06454 111 aaKnown RBP13.21□□□□□ -0.3
TRERF1-205ENST00000541110 DNTTIP2Q5QJE6 756 aaKnown RBP13.21□□□□□ -0.3
TRERF1-205ENST00000541110 LAS1LQ9Y4W2 734 aaKnown RBP13.21□□□□□ -0.3
TRERF1-205ENST00000541110 TRHP20396 242 aaPredicted RBP13.17□□□□□ -0.3
TRERF1-205ENST00000541110 KCNH8Q96L42 1107 aa13.16□□□□□ -0.3
TRERF1-205ENST00000541110 FGD1P98174 961 aa13.16□□□□□ -0.3
TRERF1-205ENST00000541110 GOLGA6L22H0YM25 854 aa13.15□□□□□ -0.3
TRERF1-205ENST00000541110 OS9Q13438 667 aaPredicted RBP13.15□□□□□ -0.3
TRERF1-205ENST00000541110 TSPY4P0CV99 314 aa13.14□□□□□ -0.31
TRERF1-205ENST00000541110 TSPY10P0CW01 314 aa13.14□□□□□ -0.31
TRERF1-205ENST00000541110 PLCB2Q00722 1185 aa13.14□□□□□ -0.31
TRERF1-205ENST00000541110 KRI1Q8N9T8 703 aaKnown RBP13.14□□□□□ -0.31
TRERF1-205ENST00000541110 DDX10Q13206 875 aaKnown RBP13.13□□□□□ -0.31
TRERF1-205ENST00000541110 TNNT2P45379 298 aaPredicted RBP13.13□□□□□ -0.31
TRERF1-205ENST00000541110 BECN1Q14457 450 aa13.13□□□□□ -0.31
TRERF1-205ENST00000541110 CHMP7Q8WUX9 453 aaPredicted RBP13.11□□□□□ -0.31
TRERF1-205ENST00000541110 FTSJ3Q8IY81 847 aaKnown RBP13.11□□□□□ -0.31
TRERF1-205ENST00000541110 KCNJ4P48050 445 aa13.09□□□□□ -0.31
TRERF1-205ENST00000541110 GOLGA6L6A8MZA4 724 aa13.09□□□□□ -0.31
TRERF1-205ENST00000541110 IRX6P78412 446 aaPredicted RBP13.08□□□□□ -0.32
TRERF1-205ENST00000541110 TMX4Q9H1E5 349 aaPredicted RBP13.07□□□□□ -0.32
TRERF1-205ENST00000541110 AMER1Q5JTC6 1135 aaPredicted RBP13.06□□□□□ -0.32
TRERF1-205ENST00000541110 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.06□□□□□ -0.32
TRERF1-205ENST00000541110 MRS2Q9HD23 443 aa13.05□□□□□ -0.32
TRERF1-205ENST00000541110 CFAP53Q96M91 514 aa13.05□□□□□ -0.32
TRERF1-205ENST00000541110 RGL3Q3MIN7 710 aa13.03□□□□□ -0.32
TRERF1-205ENST00000541110 SENP3-EIF4A1A0A087X0R7 540 aa13.02□□□□□ -0.32
TRERF1-205ENST00000541110 SOX12O15370 315 aa13.02□□□□□ -0.32
TRERF1-205ENST00000541110 POGKQ9P215 609 aa13.02□□□□□ -0.33
TRERF1-205ENST00000541110 PDE4CQ08493 712 aa13.02□□□□□ -0.33
TRERF1-205ENST00000541110 EIF4G2P78344 907 aaKnown RBP eCLIP13.01□□□□□ -0.33
TRERF1-205ENST00000541110 NEUROD2Q15784 382 aa13.01□□□□□ -0.33
TRERF1-205ENST00000541110 DDRGK1Q96HY6 314 aa13□□□□□ -0.33
TRERF1-205ENST00000541110 NOC3LQ8WTT2 800 aaKnown RBP13□□□□□ -0.33
TRERF1-205ENST00000541110 CCDC9Q9Y3X0 531 aaKnown RBP13□□□□□ -0.33
TRERF1-205ENST00000541110 GNL2Q13823 731 aaKnown RBP13□□□□□ -0.33
TRERF1-205ENST00000541110 KIAA2012Q0VF49 1180 aa13□□□□□ -0.33
TRERF1-205ENST00000541110 ANO8Q9HCE9 1232 aaPredicted RBP13□□□□□ -0.33
TRERF1-205ENST00000541110 G3V3G9 751 aa12.99□□□□□ -0.33
TRERF1-205ENST00000541110 DCAF8Q5TAQ9 597 aa12.99□□□□□ -0.33
TRERF1-205ENST00000541110 MAPK8IP3Q9UPT6 1336 aa12.99□□□□□ -0.33
TRERF1-205ENST00000541110 HIRIP3Q9BW71 556 aaPredicted RBP12.98□□□□□ -0.33
TRERF1-205ENST00000541110 ZNF330Q9Y3S2 320 aaPredicted RBP12.97□□□□□ -0.33
TRERF1-205ENST00000541110 ANP32EQ9BTT0 268 aa12.97□□□□□ -0.33
TRERF1-205ENST00000541110 NRDCO43847 1150 aa12.96□□□□□ -0.33
TRERF1-205ENST00000541110 GOLGA6L4A6NEF3 574 aa12.95□□□□□ -0.34
TRERF1-205ENST00000541110 MLECQ14165 292 aa12.95□□□□□ -0.34
TRERF1-205ENST00000541110 HSP90AB1P08238 724 aaKnown RBP12.95□□□□□ -0.34
TRERF1-205ENST00000541110 DRC7Q8IY82 874 aa12.95□□□□□ -0.34
TRERF1-205ENST00000541110 KNSTRNQ9Y448 316 aa12.95□□□□□ -0.34
TRERF1-205ENST00000541110 PNNQ9H307 717 aaKnown RBP12.94□□□□□ -0.34
TRERF1-205ENST00000541110 ERICH6BQ5W0A0 696 aa12.93□□□□□ -0.34
TRERF1-205ENST00000541110 MTUS2Q5JR59 1369 aa12.93□□□□□ -0.34
TRERF1-205ENST00000541110 FBXO3Q9UK99 471 aa12.92□□□□□ -0.34
TRERF1-205ENST00000541110 ACIN1Q9UKV3 1341 aaKnown RBP12.92□□□□□ -0.34
TRERF1-205ENST00000541110 U2SURPO15042 1029 aaKnown RBP12.92□□□□□ -0.34
TRERF1-205ENST00000541110 RRP7BPQ9NSQ0 103 aa12.92□□□□□ -0.34
TRERF1-205ENST00000541110 L1TD1Q5T7N2 865 aaKnown RBP12.91□□□□□ -0.34
TRERF1-205ENST00000541110 CSRNP3Q8WYN3 585 aa12.91□□□□□ -0.34
TRERF1-205ENST00000541110 FRAT1Q92837 279 aaPredicted RBP12.9□□□□□ -0.34
TRERF1-205ENST00000541110 PAK3O75914 559 aaPredicted RBP12.9□□□□□ -0.34
TRERF1-205ENST00000541110 NAP1L5Q96NT1 182 aaPredicted RBP12.9□□□□□ -0.34
TRERF1-205ENST00000541110 NUDCQ9Y266 331 aa12.9□□□□□ -0.34
TRERF1-205ENST00000541110 CHAF1AQ13111 956 aaPredicted RBP12.9□□□□□ -0.35
TRERF1-205ENST00000541110 SCRIBQ14160 1630 aa12.87□□□□□ -0.35
TRERF1-205ENST00000541110 VPS53Q5VIR6 699 aa12.87□□□□□ -0.35
TRERF1-205ENST00000541110 CSB-PGBD3P0DP91 1061 aa12.87□□□□□ -0.35
TRERF1-205ENST00000541110 A0A0U1RQG5 324 aaPredicted RBP12.86□□□□□ -0.35
TRERF1-205ENST00000541110 CDCA8Q53HL2 280 aa12.86□□□□□ -0.35
TRERF1-205ENST00000541110 CNKSR2Q8WXI2 1034 aa12.86□□□□□ -0.35
TRERF1-205ENST00000541110 PLEKHD1A6NEE1 506 aa12.84□□□□□ -0.35
TRERF1-205ENST00000541110 RTF1Q92541 710 aaKnown RBP12.84□□□□□ -0.35
TRERF1-205ENST00000541110 CHMP3Q9Y3E7 222 aa12.83□□□□□ -0.36
TRERF1-205ENST00000541110 MCCP23508 829 aa12.82□□□□□ -0.36
TRERF1-205ENST00000541110 WWC1Q8IX03 1113 aa12.82□□□□□ -0.36
TRERF1-205ENST00000541110 RGS3P49796 1198 aa12.82□□□□□ -0.36
TRERF1-205ENST00000541110 AEBP2Q6ZN18 517 aaPredicted RBP12.81□□□□□ -0.36
TRERF1-205ENST00000541110 CREBRFQ8IUR6 639 aa12.81□□□□□ -0.36
TRERF1-205ENST00000541110 TAF7LQ5H9L4 462 aa12.81□□□□□ -0.36
TRERF1-205ENST00000541110 CC2D1BQ5T0F9 858 aaKnown RBP12.8□□□□□ -0.36
TRERF1-205ENST00000541110 CHMP4BQ9H444 224 aaKnown RBP12.8□□□□□ -0.36
TRERF1-205ENST00000541110 SAFB2Q14151 953 aaKnown RBP eCLIP12.8□□□□□ -0.36
TRERF1-205ENST00000541110 HDGFP51858 240 aaKnown RBP12.8□□□□□ -0.36
TRERF1-205ENST00000541110 SRPK2P78362 688 aaKnown RBP12.8□□□□□ -0.36
TRERF1-205ENST00000541110 GORABQ5T7V8 394 aa12.79□□□□□ -0.36
TRERF1-205ENST00000541110 SPRYD3Q8NCJ5 442 aa12.79□□□□□ -0.36
TRERF1-205ENST00000541110 APBB1O00213 710 aa12.79□□□□□ -0.36
TRERF1-205ENST00000541110 MSH5O43196 834 aa12.79□□□□□ -0.36
TRERF1-205ENST00000541110 ERCC6Q03468 1493 aa12.78□□□□□ -0.36
TRERF1-205ENST00000541110 PHF23Q9BUL5 403 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms