RNA–Protein interactions for RNA: ENST00000538239.5

LRP6-203, Transcript of LDL receptor related protein 6, humanhuman

TSL 1 (best)

Gene LRP6, Length 7,812 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP6-203ENST00000538239 RGL3Q3MIN7 710 aa7.3□□□□□ -1.24
LRP6-203ENST00000538239 MLECQ14165 292 aa7.29□□□□□ -1.24
LRP6-203ENST00000538239 FAM9BQ8IZU0 186 aa7.29□□□□□ -1.24
LRP6-203ENST00000538239 DDX10Q13206 875 aaKnown RBP7.28□□□□□ -1.24
LRP6-203ENST00000538239 RTL5Q5HYW3 569 aaPredicted RBP7.27□□□□□ -1.25
LRP6-203ENST00000538239 TMC1Q8TDI8 760 aa7.27□□□□□ -1.25
LRP6-203ENST00000538239 HIRIP3Q9BW71 556 aaPredicted RBP7.26□□□□□ -1.25
LRP6-203ENST00000538239 CUX2O14529 1486 aa7.26□□□□□ -1.25
LRP6-203ENST00000538239 WDR43Q15061 677 aaKnown RBP eCLIP7.26□□□□□ -1.25
LRP6-203ENST00000538239 CEP162Q5TB80 1403 aa7.25□□□□□ -1.25
LRP6-203ENST00000538239 LMOD2Q6P5Q4 547 aa7.24□□□□□ -1.25
LRP6-203ENST00000538239 EEA1Q15075 1411 aa7.24□□□□□ -1.25
LRP6-203ENST00000538239 PDS5BQ9NTI5 1447 aa7.23□□□□□ -1.25
LRP6-203ENST00000538239 CEP164Q9UPV0 1460 aa7.23□□□□□ -1.25
LRP6-203ENST00000538239 SMARCA2P51531 1590 aa7.23□□□□□ -1.25
LRP6-203ENST00000538239 HNRNPUQ00839 825 aaKnown RBP eCLIP7.22□□□□□ -1.25
LRP6-203ENST00000538239 GTF3C3Q9Y5Q9 886 aa7.22□□□□□ -1.25
LRP6-203ENST00000538239 NPM2Q86SE8 214 aaKnown RBP7.22□□□□□ -1.25
LRP6-203ENST00000538239 CARMIL1Q5VZK9 1371 aa7.22□□□□□ -1.25
LRP6-203ENST00000538239 PPM1GO15355 546 aaPredicted RBP7.21□□□□□ -1.25
LRP6-203ENST00000538239 CCNB3Q8WWL7 1395 aa7.21□□□□□ -1.26
LRP6-203ENST00000538239 ARXQ96QS3 562 aa7.21□□□□□ -1.26
LRP6-203ENST00000538239 MROH2BQ7Z745 1585 aa7.21□□□□□ -1.26
LRP6-203ENST00000538239 POGKQ9P215 609 aa7.2□□□□□ -1.26
LRP6-203ENST00000538239 CCDC88BA6NC98 1476 aa7.2□□□□□ -1.26
LRP6-203ENST00000538239 MYO15BQ96JP2 1530 aa7.2□□□□□ -1.26
LRP6-203ENST00000538239 SOGA1O94964 1423 aa7.2□□□□□ -1.26
LRP6-203ENST00000538239 TDRD9Q8NDG6 1382 aaKnown RBP7.19□□□□□ -1.26
LRP6-203ENST00000538239 ABCC8Q09428 1581 aa7.19□□□□□ -1.26
LRP6-203ENST00000538239 EIF4G2P78344 907 aaKnown RBP eCLIP7.18□□□□□ -1.26
LRP6-203ENST00000538239 MRS2Q9HD23 443 aa7.18□□□□□ -1.26
LRP6-203ENST00000538239 WIZO95785 1651 aa7.17□□□□□ -1.26
LRP6-203ENST00000538239 GGT6Q6P531 493 aa7.17□□□□□ -1.26
LRP6-203ENST00000538239 KANK1Q14678 1352 aa7.17□□□□□ -1.26
LRP6-203ENST00000538239 CARMIL2Q6F5E8 1435 aa7.16□□□□□ -1.26
LRP6-203ENST00000538239 SENP3-EIF4A1A0A087X0R7 540 aa7.16□□□□□ -1.26
LRP6-203ENST00000538239 TNIKQ9UKE5 1360 aa7.16□□□□□ -1.26
LRP6-203ENST00000538239 CARD11Q9BXL7 1154 aa7.16□□□□□ -1.26
LRP6-203ENST00000538239 FKBP8Q14318 412 aa7.15□□□□□ -1.26
LRP6-203ENST00000538239 HSP90AA1P07900 732 aaKnown RBP7.14□□□□□ -1.27
LRP6-203ENST00000538239 TNNT2P45379 298 aaPredicted RBP7.14□□□□□ -1.27
LRP6-203ENST00000538239 FHAD1B1AJZ9 1412 aa7.14□□□□□ -1.27
LRP6-203ENST00000538239 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.14□□□□□ -1.27
LRP6-203ENST00000538239 SAFB2Q14151 953 aaKnown RBP eCLIP7.14□□□□□ -1.27
LRP6-203ENST00000538239 SOX12O15370 315 aa7.14□□□□□ -1.27
LRP6-203ENST00000538239 KNSTRNQ9Y448 316 aa7.13□□□□□ -1.27
LRP6-203ENST00000538239 CFAP53Q96M91 514 aa7.13□□□□□ -1.27
LRP6-203ENST00000538239 LAS1LQ9Y4W2 734 aaKnown RBP7.13□□□□□ -1.27
LRP6-203ENST00000538239 ANP32AP39687 249 aaKnown RBP7.13□□□□□ -1.27
LRP6-203ENST00000538239 NPHP1O15259 732 aa7.12□□□□□ -1.27
LRP6-203ENST00000538239 MYH16Q9H6N6 1097 aa7.12□□□□□ -1.27
LRP6-203ENST00000538239 HDGFP51858 240 aaKnown RBP7.12□□□□□ -1.27
LRP6-203ENST00000538239 CDCA8Q53HL2 280 aa7.12□□□□□ -1.27
LRP6-203ENST00000538239 STK26Q9P289 416 aa7.12□□□□□ -1.27
LRP6-203ENST00000538239 SIN3AQ96ST3 1273 aa7.11□□□□□ -1.27
LRP6-203ENST00000538239 TOP2AP11388 1531 aaKnown RBP7.11□□□□□ -1.27
LRP6-203ENST00000538239 UPF2Q9HAU5 1272 aaKnown RBP7.11□□□□□ -1.27
LRP6-203ENST00000538239 DCAF11Q8TEB1 546 aa7.11□□□□□ -1.27
LRP6-203ENST00000538239 CADPSQ9ULU8 1353 aa7.11□□□□□ -1.27
LRP6-203ENST00000538239 NEUROD2Q15784 382 aa7.1□□□□□ -1.27
LRP6-203ENST00000538239 ACIN1Q9UKV3 1341 aaKnown RBP7.1□□□□□ -1.27
LRP6-203ENST00000538239 IRX6P78412 446 aaPredicted RBP7.1□□□□□ -1.27
LRP6-203ENST00000538239 SRPK2P78362 688 aaKnown RBP7.1□□□□□ -1.27
LRP6-203ENST00000538239 CC2D1BQ5T0F9 858 aaKnown RBP7.1□□□□□ -1.27
LRP6-203ENST00000538239 CYB5RLQ6IPT4 315 aa7.1□□□□□ -1.27
LRP6-203ENST00000538239 CCDC136Q96JN2 1154 aa7.09□□□□□ -1.28
LRP6-203ENST00000538239 ARHGAP35Q9NRY4 1499 aa7.08□□□□□ -1.28
LRP6-203ENST00000538239 MAPK8IP3Q9UPT6 1336 aa7.08□□□□□ -1.28
LRP6-203ENST00000538239 PAK3O75914 559 aaPredicted RBP7.08□□□□□ -1.28
LRP6-203ENST00000538239 SMARCA4P51532 1647 aa7.08□□□□□ -1.28
LRP6-203ENST00000538239 U2SURPO15042 1029 aaKnown RBP7.07□□□□□ -1.28
LRP6-203ENST00000538239 ATAD2BQ9ULI0 1458 aa7.07□□□□□ -1.28
LRP6-203ENST00000538239 FOXD1Q16676 465 aa7.07□□□□□ -1.28
LRP6-203ENST00000538239 EFCAB2Q5VUJ9 269 aa7.07□□□□□ -1.28
LRP6-203ENST00000538239 FANCD2Q9BXW9 1451 aa7.07□□□□□ -1.28
LRP6-203ENST00000538239 HNRNPMP52272 730 aaKnown RBP eCLIP7.07□□□□□ -1.283e-6■■■■□ 22.8
LRP6-203ENST00000538239 NUTM2DQ5VT03 806 aaPredicted RBP7.07□□□□□ -1.28
LRP6-203ENST00000538239 NUDCQ9Y266 331 aa7.06□□□□□ -1.28
LRP6-203ENST00000538239 JPH4Q96JJ6 628 aa7.06□□□□□ -1.28
LRP6-203ENST00000538239 KIF3BO15066 747 aa7.05□□□□□ -1.28
LRP6-203ENST00000538239 MIER1Q8N108 512 aa7.05□□□□□ -1.28
LRP6-203ENST00000538239 PKD2Q13563 968 aa7.05□□□□□ -1.28
LRP6-203ENST00000538239 OSCARQ8IYS5 282 aa7.05□□□□□ -1.28
LRP6-203ENST00000538239 TMF1P82094 1093 aa7.04□□□□□ -1.28
LRP6-203ENST00000538239 FHOD3Q2V2M9 1422 aa7.04□□□□□ -1.28
LRP6-203ENST00000538239 CCDC9Q9Y3X0 531 aaKnown RBP7.04□□□□□ -1.28
LRP6-203ENST00000538239 KANK4Q5T7N3 995 aaPredicted RBP7.04□□□□□ -1.28
LRP6-203ENST00000538239 AEBP2Q6ZN18 517 aaPredicted RBP7.04□□□□□ -1.28
LRP6-203ENST00000538239 FMN1Q68DA7 1419 aa7.03□□□□□ -1.28
LRP6-203ENST00000538239 RAPGEF2Q9Y4G8 1499 aa7.03□□□□□ -1.28
LRP6-203ENST00000538239 FTSJ3Q8IY81 847 aaKnown RBP7.03□□□□□ -1.28
LRP6-203ENST00000538239 CSB-PGBD3P0DP91 1061 aa7.03□□□□□ -1.28
LRP6-203ENST00000538239 WASHC2CQ9Y4E1 1318 aa7.02□□□□□ -1.29
LRP6-203ENST00000538239 SPAG9O60271 1321 aaKnown RBP7.02□□□□□ -1.29
LRP6-203ENST00000538239 EID1Q9Y6B2 187 aa7.02□□□□□ -1.29
LRP6-203ENST00000538239 NUP155O75694 1391 aa7.01□□□□□ -1.29
LRP6-203ENST00000538239 MORC1Q86VD1 984 aa7.01□□□□□ -1.29
LRP6-203ENST00000538239 ANKRD30AQ9BXX3 1397 aa7.01□□□□□ -1.29
LRP6-203ENST00000538239 HDGFL2Q7Z4V5 671 aaPredicted RBP7.01□□□□□ -1.29
LRP6-203ENST00000538239 TAOK2Q9UL54 1235 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms