RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 KIF27Q86VH2 1401 aa19.94■□□□□ 0.78
PCDHA9-202ENST00000532602 A0A0G2JS52 829 aa19.93■□□□□ 0.78
PCDHA9-202ENST00000532602 EIF4G1Q04637 1599 aaKnown RBP19.93■□□□□ 0.78
PCDHA9-202ENST00000532602 PPP1R15AO75807 674 aaPredicted RBP19.92■□□□□ 0.78
PCDHA9-202ENST00000532602 NPM2Q86SE8 214 aaKnown RBP19.92■□□□□ 0.78
PCDHA9-202ENST00000532602 BAZ1AQ9NRL2 1556 aaPredicted RBP19.92■□□□□ 0.78
PCDHA9-202ENST00000532602 C14orf37Q86TY3 774 aa19.91■□□□□ 0.78
PCDHA9-202ENST00000532602 ANP32AP39687 249 aaKnown RBP19.91■□□□□ 0.78
PCDHA9-202ENST00000532602 TMC1Q8TDI8 760 aa19.88■□□□□ 0.77
PCDHA9-202ENST00000532602 CFDP1Q9UEE9 299 aaPredicted RBP19.88■□□□□ 0.77
PCDHA9-202ENST00000532602 FKBP8Q14318 412 aa19.86■□□□□ 0.77
PCDHA9-202ENST00000532602 UPF2Q9HAU5 1272 aaKnown RBP19.84■□□□□ 0.77
PCDHA9-202ENST00000532602 WDR43Q15061 677 aaKnown RBP eCLIP19.83■□□□□ 0.77
PCDHA9-202ENST00000532602 ACIN1Q9UKV3 1341 aaKnown RBP19.83■□□□□ 0.76
PCDHA9-202ENST00000532602 SENP3-EIF4A1A0A087X0R7 540 aa19.83■□□□□ 0.76
PCDHA9-202ENST00000532602 HSP90AA1P07900 732 aaKnown RBP19.81■□□□□ 0.76
PCDHA9-202ENST00000532602 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.81■□□□□ 0.76
PCDHA9-202ENST00000532602 EEA1Q15075 1411 aa19.8■□□□□ 0.76
PCDHA9-202ENST00000532602 TRHP20396 242 aaPredicted RBP19.79■□□□□ 0.76
PCDHA9-202ENST00000532602 CEP164Q9UPV0 1460 aa19.78■□□□□ 0.76
PCDHA9-202ENST00000532602 MRS2Q9HD23 443 aa19.77■□□□□ 0.76
PCDHA9-202ENST00000532602 CUX2O14529 1486 aa19.77■□□□□ 0.76
PCDHA9-202ENST00000532602 ANP32BQ92688 251 aaKnown RBP19.73■□□□□ 0.75
PCDHA9-202ENST00000532602 ABCC8Q09428 1581 aa19.73■□□□□ 0.75
PCDHA9-202ENST00000532602 MROH2BQ7Z745 1585 aa19.73■□□□□ 0.75
PCDHA9-202ENST00000532602 SOGA1O94964 1423 aa19.73■□□□□ 0.75
PCDHA9-202ENST00000532602 EIF4G2P78344 907 aaKnown RBP eCLIP19.72■□□□□ 0.75
PCDHA9-202ENST00000532602 IRX6P78412 446 aaPredicted RBP19.71■□□□□ 0.75
PCDHA9-202ENST00000532602 MLECQ14165 292 aa19.71■□□□□ 0.75
PCDHA9-202ENST00000532602 TNIKQ9UKE5 1360 aa19.69■□□□□ 0.74
PCDHA9-202ENST00000532602 CCDC88BA6NC98 1476 aa19.69■□□□□ 0.74
PCDHA9-202ENST00000532602 CARMIL1Q5VZK9 1371 aa19.68■□□□□ 0.74
PCDHA9-202ENST00000532602 PPM1GO15355 546 aaPredicted RBP19.66■□□□□ 0.74
PCDHA9-202ENST00000532602 MIER1Q8N108 512 aa19.66■□□□□ 0.74
PCDHA9-202ENST00000532602 HAP1P54257 671 aaPredicted RBP19.65■□□□□ 0.74
PCDHA9-202ENST00000532602 SIN3AQ96ST3 1273 aa19.64■□□□□ 0.73
PCDHA9-202ENST00000532602 MYH16Q9H6N6 1097 aa19.63■□□□□ 0.73
PCDHA9-202ENST00000532602 WIZO95785 1651 aa19.63■□□□□ 0.73
PCDHA9-202ENST00000532602 CCNB3Q8WWL7 1395 aa19.62■□□□□ 0.73
PCDHA9-202ENST00000532602 CARD11Q9BXL7 1154 aa19.6■□□□□ 0.73
PCDHA9-202ENST00000532602 LMOD2Q6P5Q4 547 aa19.6■□□□□ 0.73
PCDHA9-202ENST00000532602 CDCA8Q53HL2 280 aa19.59■□□□□ 0.73
PCDHA9-202ENST00000532602 CCDC136Q96JN2 1154 aa19.58■□□□□ 0.72
PCDHA9-202ENST00000532602 TDRD9Q8NDG6 1382 aaKnown RBP19.57■□□□□ 0.72
PCDHA9-202ENST00000532602 SMARCA2P51531 1590 aa19.56■□□□□ 0.72
PCDHA9-202ENST00000532602 TNNT2P45379 298 aaPredicted RBP19.55■□□□□ 0.72
PCDHA9-202ENST00000532602 POGKQ9P215 609 aa19.54■□□□□ 0.72
PCDHA9-202ENST00000532602 CFAP53Q96M91 514 aa19.54■□□□□ 0.72
PCDHA9-202ENST00000532602 ARXQ96QS3 562 aa19.53■□□□□ 0.72
PCDHA9-202ENST00000532602 PDS5BQ9NTI5 1447 aa19.51■□□□□ 0.71
PCDHA9-202ENST00000532602 KNSTRNQ9Y448 316 aa19.5■□□□□ 0.71
PCDHA9-202ENST00000532602 NEUROD2Q15784 382 aa19.49■□□□□ 0.71
PCDHA9-202ENST00000532602 LAS1LQ9Y4W2 734 aaKnown RBP19.48■□□□□ 0.71
PCDHA9-202ENST00000532602 FHAD1B1AJZ9 1412 aa19.47■□□□□ 0.71
PCDHA9-202ENST00000532602 CC2D1BQ5T0F9 858 aaKnown RBP19.47■□□□□ 0.71
PCDHA9-202ENST00000532602 GGT6Q6P531 493 aa19.47■□□□□ 0.71
PCDHA9-202ENST00000532602 SAFB2Q14151 953 aaKnown RBP eCLIP19.47■□□□□ 0.71
PCDHA9-202ENST00000532602 FOXD1Q16676 465 aa19.45■□□□□ 0.7
PCDHA9-202ENST00000532602 DCAF11Q8TEB1 546 aa19.45■□□□□ 0.7
PCDHA9-202ENST00000532602 SOX12O15370 315 aa19.43■□□□□ 0.7
PCDHA9-202ENST00000532602 KANK4Q5T7N3 995 aaPredicted RBP19.42■□□□□ 0.7
PCDHA9-202ENST00000532602 KANK1Q14678 1352 aa19.4■□□□□ 0.7
PCDHA9-202ENST00000532602 TOP2AP11388 1531 aaKnown RBP19.39■□□□□ 0.69
PCDHA9-202ENST00000532602 CARMIL2Q6F5E8 1435 aa19.37■□□□□ 0.69
PCDHA9-202ENST00000532602 STK26Q9P289 416 aa19.37■□□□□ 0.69
PCDHA9-202ENST00000532602 CDK11BP21127 795 aaKnown RBP19.37■□□□□ 0.69
PCDHA9-202ENST00000532602 ARHGAP35Q9NRY4 1499 aa19.36■□□□□ 0.69
PCDHA9-202ENST00000532602 HDGFP51858 240 aaKnown RBP19.35■□□□□ 0.69
PCDHA9-202ENST00000532602 NUDCQ9Y266 331 aa19.35■□□□□ 0.69
PCDHA9-202ENST00000532602 U2SURPO15042 1029 aaKnown RBP19.33■□□□□ 0.68
PCDHA9-202ENST00000532602 MAPK8IP3Q9UPT6 1336 aa19.32■□□□□ 0.68
PCDHA9-202ENST00000532602 SRPK2P78362 688 aaKnown RBP19.32■□□□□ 0.68
PCDHA9-202ENST00000532602 EIF5BO60841 1220 aaKnown RBP19.3■□□□□ 0.68
PCDHA9-202ENST00000532602 NBR1Q14596 966 aa19.3■□□□□ 0.68
PCDHA9-202ENST00000532602 PKD2Q13563 968 aa19.29■□□□□ 0.68
PCDHA9-202ENST00000532602 CADPSQ9ULU8 1353 aa19.29■□□□□ 0.68
PCDHA9-202ENST00000532602 HNRNPMP52272 730 aaKnown RBP eCLIP19.28■□□□□ 0.68
PCDHA9-202ENST00000532602 NUTM2DQ5VT03 806 aaPredicted RBP19.27■□□□□ 0.67
PCDHA9-202ENST00000532602 FHOD3Q2V2M9 1422 aa19.26■□□□□ 0.67
PCDHA9-202ENST00000532602 SMARCA4P51532 1647 aa19.26■□□□□ 0.67
PCDHA9-202ENST00000532602 VPS8Q8N3P4 1428 aa19.25■□□□□ 0.67
PCDHA9-202ENST00000532602 NCLP19338 710 aaKnown RBP19.25■□□□□ 0.67
PCDHA9-202ENST00000532602 BECN1Q14457 450 aa19.25■□□□□ 0.67
PCDHA9-202ENST00000532602 FTSJ3Q8IY81 847 aaKnown RBP19.25■□□□□ 0.67
PCDHA9-202ENST00000532602 TMF1P82094 1093 aa19.24■□□□□ 0.67
PCDHA9-202ENST00000532602 ATAD2BQ9ULI0 1458 aa19.24■□□□□ 0.67
PCDHA9-202ENST00000532602 SETD5Q9C0A6 1442 aa19.24■□□□□ 0.67
PCDHA9-202ENST00000532602 SUPT16HQ9Y5B9 1047 aaKnown RBP19.24■□□□□ 0.67
PCDHA9-202ENST00000532602 FRAT1Q92837 279 aaPredicted RBP19.23■□□□□ 0.67
PCDHA9-202ENST00000532602 CASC1Q6TDU7 716 aa19.22■□□□□ 0.67
PCDHA9-202ENST00000532602 CHMP4BQ9H444 224 aaKnown RBP19.22■□□□□ 0.67
PCDHA9-202ENST00000532602 PNNQ9H307 717 aaKnown RBP19.22■□□□□ 0.67
PCDHA9-202ENST00000532602 NPHP1O15259 732 aa19.21■□□□□ 0.67
PCDHA9-202ENST00000532602 EFCAB2Q5VUJ9 269 aa19.18■□□□□ 0.66
PCDHA9-202ENST00000532602 PAK3O75914 559 aaPredicted RBP19.18■□□□□ 0.66
PCDHA9-202ENST00000532602 GOLGA6L22H0YM25 854 aa19.18■□□□□ 0.66
PCDHA9-202ENST00000532602 KIF3BO15066 747 aa19.18■□□□□ 0.66
PCDHA9-202ENST00000532602 RAPGEF2Q9Y4G8 1499 aa19.18■□□□□ 0.66
PCDHA9-202ENST00000532602 DDRGK1Q96HY6 314 aa19.17■□□□□ 0.66
PCDHA9-202ENST00000532602 FMN1Q68DA7 1419 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms