RNA–Protein interactions for RNA: ENST00000525209.5

CD44-213, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 574 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-213ENST00000525209 CREBZFQ9NS37 354 aa7.87□□□□□ -1.15
CD44-213ENST00000525209 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.87□□□□□ -1.15
CD44-213ENST00000525209 STAG3Q9UJ98 1225 aa7.87□□□□□ -1.15
CD44-213ENST00000525209 FARP1Q9Y4F1 1045 aaPredicted RBP7.87□□□□□ -1.15
CD44-213ENST00000525209 KLHL34Q8N239 644 aa7.85□□□□□ -1.15
CD44-213ENST00000525209 BBXQ8WY36 941 aaPredicted RBP7.85□□□□□ -1.15
CD44-213ENST00000525209 PELP1Q8IZL8 1130 aaKnown RBP7.84□□□□□ -1.15
CD44-213ENST00000525209 TTBK1Q5TCY1 1321 aaPredicted RBP7.83□□□□□ -1.16
CD44-213ENST00000525209 PROM2Q8N271 834 aa7.83□□□□□ -1.16
CD44-213ENST00000525209 PAXIP1Q6ZW49 1069 aaPredicted RBP7.82□□□□□ -1.16
CD44-213ENST00000525209 CD44P16070 742 aaKnown RBP7.81□□□□□ -1.16
CD44-213ENST00000525209 NBR1Q14596 966 aa7.81□□□□□ -1.16
CD44-213ENST00000525209 NPM2Q86SE8 214 aaKnown RBP7.8□□□□□ -1.16
CD44-213ENST00000525209 FBXO3Q9UK99 471 aa7.8□□□□□ -1.16
CD44-213ENST00000525209 PKD2Q13563 968 aa7.78□□□□□ -1.16
CD44-213ENST00000525209 CFAP44Q96MT7 982 aa7.78□□□□□ -1.16
CD44-213ENST00000525209 GABBR2O75899 941 aa7.76□□□□□ -1.17
CD44-213ENST00000525209 TSHZ2Q9NRE2 1034 aa7.75□□□□□ -1.17
CD44-213ENST00000525209 SUPT5HO00267 1087 aaKnown RBP7.74□□□□□ -1.17
CD44-213ENST00000525209 MNX1P50219 401 aaPredicted RBP7.74□□□□□ -1.17
CD44-213ENST00000525209 MYT1Q01538 1121 aa7.74□□□□□ -1.17
CD44-213ENST00000525209 ZRANB1Q9UGI0 708 aa7.72□□□□□ -1.17
CD44-213ENST00000525209 NPM1P06748 294 aaKnown RBP eCLIP7.71□□□□□ -1.18
CD44-213ENST00000525209 DNAJC5Q9H3Z4 198 aa7.71□□□□□ -1.18
CD44-213ENST00000525209 TRIM26Q12899 539 aaPredicted RBP7.7□□□□□ -1.18
CD44-213ENST00000525209 SPRYD3Q8NCJ5 442 aa7.68□□□□□ -1.18
CD44-213ENST00000525209 VASPP50552 380 aaPredicted RBP7.67□□□□□ -1.18
CD44-213ENST00000525209 MIER1Q8N108 512 aa7.67□□□□□ -1.18
CD44-213ENST00000525209 IFNLR1Q8IU57 520 aaPredicted RBP7.66□□□□□ -1.18
CD44-213ENST00000525209 ZNF579Q8NAF0 562 aaKnown RBP7.66□□□□□ -1.18
CD44-213ENST00000525209 PHF12Q96QT6 1004 aa7.66□□□□□ -1.18
CD44-213ENST00000525209 UBTFP17480 764 aaKnown RBP7.65□□□□□ -1.18
CD44-213ENST00000525209 PAK3O75914 559 aaPredicted RBP7.63□□□□□ -1.19
CD44-213ENST00000525209 PLCD3Q8N3E9 789 aa7.63□□□□□ -1.19
CD44-213ENST00000525209 GALR2O43603 387 aaPredicted RBP7.62□□□□□ -1.19
CD44-213ENST00000525209 POTEIP0CG38 1075 aa7.62□□□□□ -1.19
CD44-213ENST00000525209 HRCP23327 699 aa7.62□□□□□ -1.19
CD44-213ENST00000525209 TSPYL2Q9H2G4 693 aaPredicted RBP7.62□□□□□ -1.19
CD44-213ENST00000525209 PLEKHG5O94827 1062 aa7.59□□□□□ -1.19
CD44-213ENST00000525209 RASEFQ8IZ41 740 aa7.58□□□□□ -1.2
CD44-213ENST00000525209 DCBLD2Q96PD2 775 aa7.57□□□□□ -1.2
CD44-213ENST00000525209 CLCN6P51797 869 aa7.54□□□□□ -1.2
CD44-213ENST00000525209 MS4A3Q96HJ5 214 aa7.54□□□□□ -1.2
CD44-213ENST00000525209 CCDC61Q9Y6R9 512 aa7.54□□□□□ -1.2
CD44-213ENST00000525209 ECM2O94769 699 aaPredicted RBP7.52□□□□□ -1.21
CD44-213ENST00000525209 NUBP1P53384 320 aa7.5□□□□□ -1.21
CD44-213ENST00000525209 LHX8Q68G74 356 aa7.49□□□□□ -1.21
CD44-213ENST00000525209 KIF12Q96FN5 646 aa7.48□□□□□ -1.21
CD44-213ENST00000525209 ZBTB47Q9UFB7 747 aaPredicted RBP7.48□□□□□ -1.21
CD44-213ENST00000525209 MAP3K13O43283 966 aa7.47□□□□□ -1.21
CD44-213ENST00000525209 TRPC6Q9Y210 931 aa7.47□□□□□ -1.21
CD44-213ENST00000525209 BRPF1P55201 1214 aaPredicted RBP7.46□□□□□ -1.22
CD44-213ENST00000525209 RGL2O15211 777 aa7.44□□□□□ -1.22
CD44-213ENST00000525209 FAM212AQ96EL1 285 aa7.43□□□□□ -1.22
CD44-213ENST00000525209 ATMINO43313 823 aaPredicted RBP7.42□□□□□ -1.22
CD44-213ENST00000525209 CCDC9Q9Y3X0 531 aaKnown RBP7.42□□□□□ -1.22
CD44-213ENST00000525209 DCAF8Q5TAQ9 597 aa7.41□□□□□ -1.22
CD44-213ENST00000525209 ASTLQ6HA08 431 aaPredicted RBP7.41□□□□□ -1.22
CD44-213ENST00000525209 ATN1P54259 1190 aaPredicted RBP7.4□□□□□ -1.22
CD44-213ENST00000525209 PCDHB13Q9Y5F0 798 aa7.4□□□□□ -1.22
CD44-213ENST00000525209 LOC105371045A0A1W2PR82 267 aa7.39□□□□□ -1.23
CD44-213ENST00000525209 POTEB2H3BUK9 544 aa7.39□□□□□ -1.23
CD44-213ENST00000525209 EIF5BO60841 1220 aaKnown RBP7.39□□□□□ -1.23
CD44-213ENST00000525209 SPOCK2Q92563 424 aa7.39□□□□□ -1.23
CD44-213ENST00000525209 BMP2KQ9NSY1 1161 aaPredicted RBP7.39□□□□□ -1.23
CD44-213ENST00000525209 CHGAP10645 457 aaKnown RBP7.38□□□□□ -1.23
CD44-213ENST00000525209 PYGBP11216 843 aa7.38□□□□□ -1.23
CD44-213ENST00000525209 ZMYND15Q9H091 742 aa7.38□□□□□ -1.23
CD44-213ENST00000525209 IFNL1Q8IU54 200 aa7.37□□□□□ -1.23
CD44-213ENST00000525209 METRNQ9UJH8 293 aa7.37□□□□□ -1.23
CD44-213ENST00000525209 RSPH6AQ9H0K4 717 aa7.36□□□□□ -1.23
CD44-213ENST00000525209 ZBTB7CA1YPR0 619 aa7.34□□□□□ -1.23
CD44-213ENST00000525209 TTLL13PA6NNM8 815 aa7.34□□□□□ -1.23
CD44-213ENST00000525209 TIE1P35590 1138 aa7.34□□□□□ -1.23
CD44-213ENST00000525209 SLC39A7Q92504 469 aa7.33□□□□□ -1.24
CD44-213ENST00000525209 SGIP1Q9BQI5 828 aa7.32□□□□□ -1.24
CD44-213ENST00000525209 PCDHB8Q9UN66 801 aa7.32□□□□□ -1.24
CD44-213ENST00000525209 C7P10643 843 aa7.31□□□□□ -1.24
CD44-213ENST00000525209 NEUROD2Q15784 382 aa7.31□□□□□ -1.24
CD44-213ENST00000525209 LMOD2Q6P5Q4 547 aa7.31□□□□□ -1.24
CD44-213ENST00000525209 OTUD5Q96G74 571 aa7.31□□□□□ -1.24
CD44-213ENST00000525209 POTEFA5A3E0 1075 aa7.3□□□□□ -1.24
CD44-213ENST00000525209 POTEJP0CG39 1038 aa7.3□□□□□ -1.24
CD44-213ENST00000525209 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.3□□□□□ -1.24
CD44-213ENST00000525209 TMEM106CQ9BVX2 250 aa7.3□□□□□ -1.24
CD44-213ENST00000525209 TRIM35Q9UPQ4 493 aa7.3□□□□□ -1.24
CD44-213ENST00000525209 SHROOM4Q9ULL8 1493 aa7.3□□□□□ -1.24
CD44-213ENST00000525209 GSE1Q14687 1217 aa7.29□□□□□ -1.24
CD44-213ENST00000525209 CIZ1Q9ULV3 898 aaPredicted RBP7.29□□□□□ -1.24
CD44-213ENST00000525209 PDIA4P13667 645 aaKnown RBP7.28□□□□□ -1.24
CD44-213ENST00000525209 ARID3AQ99856 593 aa7.28□□□□□ -1.24
CD44-213ENST00000525209 COLQQ9Y215 455 aaPredicted RBP7.28□□□□□ -1.24
CD44-213ENST00000525209 HS6ST3Q8IZP7 471 aa7.26□□□□□ -1.25
CD44-213ENST00000525209 SEC24BO95487 1268 aa7.25□□□□□ -1.25
CD44-213ENST00000525209 NECTIN2Q92692 538 aa7.25□□□□□ -1.25
CD44-213ENST00000525209 C1orf115Q9H7X2 142 aa7.25□□□□□ -1.25
CD44-213ENST00000525209 P3H3Q8IVL6 736 aa7.22□□□□□ -1.25
CD44-213ENST00000525209 HMGB1P09429 215 aaKnown RBP7.21□□□□□ -1.26
CD44-213ENST00000525209 CHRM1P11229 460 aaPredicted RBP7.21□□□□□ -1.26
CD44-213ENST00000525209 IGSF3O75054 1194 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms