RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 MYT1LQ9UL68 1186 aa14.01□□□□□ -0.17
PDGFRB-207ENST00000520579 BAZ1BQ9UIG0 1483 aaKnown RBP14□□□□□ -0.17
PDGFRB-207ENST00000520579 IL27Q8NEV9 243 aa14□□□□□ -0.17
PDGFRB-207ENST00000520579 PAK3O75914 559 aaPredicted RBP14□□□□□ -0.17
PDGFRB-207ENST00000520579 FAM9BQ8IZU0 186 aa13.99□□□□□ -0.17
PDGFRB-207ENST00000520579 POLR3GLQ9BT43 218 aa13.98□□□□□ -0.17
PDGFRB-207ENST00000520579 WIZO95785 1651 aa13.98□□□□□ -0.17
PDGFRB-207ENST00000520579 AEBP2Q6ZN18 517 aaPredicted RBP13.98□□□□□ -0.17
PDGFRB-207ENST00000520579 UNC13AQ9UPW8 1703 aa13.97□□□□□ -0.17
PDGFRB-207ENST00000520579 GLIPR1L2Q4G1C9 344 aa13.96□□□□□ -0.17
PDGFRB-207ENST00000520579 TIMELESSQ9UNS1 1208 aa13.95□□□□□ -0.18
PDGFRB-207ENST00000520579 VSIG10Q8N0Z9 540 aa13.94□□□□□ -0.18
PDGFRB-207ENST00000520579 LAS1LQ9Y4W2 734 aaKnown RBP13.94□□□□□ -0.18
PDGFRB-207ENST00000520579 NOP58Q9Y2X3 529 aaKnown RBP13.92□□□□□ -0.18
PDGFRB-207ENST00000520579 GOLGA3Q08378 1498 aa13.92□□□□□ -0.18
PDGFRB-207ENST00000520579 PDE4CQ08493 712 aa13.91□□□□□ -0.18
PDGFRB-207ENST00000520579 P3H3Q8IVL6 736 aa13.9□□□□□ -0.18
PDGFRB-207ENST00000520579 FANCIQ9NVI1 1328 aa13.86□□□□□ -0.19
PDGFRB-207ENST00000520579 ZMYND15Q9H091 742 aa13.84□□□□□ -0.19
PDGFRB-207ENST00000520579 VPS8Q8N3P4 1428 aa13.83□□□□□ -0.2
PDGFRB-207ENST00000520579 ZBTB47Q9UFB7 747 aaPredicted RBP13.83□□□□□ -0.2
PDGFRB-207ENST00000520579 ANP32AP39687 249 aaKnown RBP13.83□□□□□ -0.2
PDGFRB-207ENST00000520579 CCDC184Q52MB2 194 aa13.81□□□□□ -0.2
PDGFRB-207ENST00000520579 PPP1R15AO75807 674 aaPredicted RBP13.81□□□□□ -0.2
PDGFRB-207ENST00000520579 PPP4R2Q9NY27 417 aa13.8□□□□□ -0.2
PDGFRB-207ENST00000520579 RAB3GAP2Q9H2M9 1393 aa13.8□□□□□ -0.2
PDGFRB-207ENST00000520579 PDIA4P13667 645 aaKnown RBP13.78□□□□□ -0.2
PDGFRB-207ENST00000520579 RAPGEF2Q9Y4G8 1499 aa13.77□□□□□ -0.21
PDGFRB-207ENST00000520579 MRS2Q9HD23 443 aa13.77□□□□□ -0.21
PDGFRB-207ENST00000520579 NEFMP07197 916 aa13.75□□□□□ -0.21
PDGFRB-207ENST00000520579 BCL11BQ9C0K0 894 aaPredicted RBP13.74□□□□□ -0.21
PDGFRB-207ENST00000520579 ARXQ96QS3 562 aa13.73□□□□□ -0.21
PDGFRB-207ENST00000520579 CCER2I3L3R5 266 aa13.72□□□□□ -0.21
PDGFRB-207ENST00000520579 CCNB3Q8WWL7 1395 aa13.72□□□□□ -0.21
PDGFRB-207ENST00000520579 TONSLQ96HA7 1378 aa13.71□□□□□ -0.21
PDGFRB-207ENST00000520579 BICRAQ9NZM4 1560 aa13.71□□□□□ -0.21
PDGFRB-207ENST00000520579 CEP164Q9UPV0 1460 aa13.71□□□□□ -0.22
PDGFRB-207ENST00000520579 WDR97A6NE52 1622 aa13.7□□□□□ -0.22
PDGFRB-207ENST00000520579 KLHL34Q8N239 644 aa13.7□□□□□ -0.22
PDGFRB-207ENST00000520579 BRPF3Q9ULD4 1205 aa13.7□□□□□ -0.22
PDGFRB-207ENST00000520579 SLC4A3P48751 1232 aa13.67□□□□□ -0.22
PDGFRB-207ENST00000520579 ZNF326Q5BKZ1 582 aaKnown RBP13.67□□□□□ -0.22
PDGFRB-207ENST00000520579 EIF4G1Q04637 1599 aaKnown RBP13.66□□□□□ -0.22
PDGFRB-207ENST00000520579 SKAP1Q86WV1 359 aa13.66□□□□□ -0.22
PDGFRB-207ENST00000520579 EEA1Q15075 1411 aa13.66□□□□□ -0.22
PDGFRB-207ENST00000520579 RBM10P98175 930 aaKnown RBP13.65□□□□□ -0.22
PDGFRB-207ENST00000520579 IPO9Q96P70 1041 aaKnown RBP13.65□□□□□ -0.23
PDGFRB-207ENST00000520579 CHIC2Q9UKJ5 165 aa13.64□□□□□ -0.23
PDGFRB-207ENST00000520579 FGD1P98174 961 aa13.62□□□□□ -0.23
PDGFRB-207ENST00000520579 ARID3CA6NKF2 412 aa13.62□□□□□ -0.23
PDGFRB-207ENST00000520579 KIF21BO75037 1637 aa13.61□□□□□ -0.23
PDGFRB-207ENST00000520579 HSPA5P11021 654 aaKnown RBP13.61□□□□□ -0.23
PDGFRB-207ENST00000520579 FOXD1Q16676 465 aa13.6□□□□□ -0.23
PDGFRB-207ENST00000520579 SETD5Q9C0A6 1442 aa13.57□□□□□ -0.24
PDGFRB-207ENST00000520579 BAZ1AQ9NRL2 1556 aaPredicted RBP13.56□□□□□ -0.24
PDGFRB-207ENST00000520579 AKNAQ7Z591 1439 aa13.56□□□□□ -0.24
PDGFRB-207ENST00000520579 RRP7BPQ9NSQ0 103 aa13.56□□□□□ -0.24
PDGFRB-207ENST00000520579 SMARCA4P51532 1647 aa13.54□□□□□ -0.24
PDGFRB-207ENST00000520579 AAMPQ13685 434 aa13.53□□□□□ -0.24
PDGFRB-207ENST00000520579 WASHC2AQ641Q2 1341 aa13.52□□□□□ -0.25
PDGFRB-207ENST00000520579 ARID4BQ4LE39 1312 aaPredicted RBP13.52□□□□□ -0.25
PDGFRB-207ENST00000520579 ARAP1Q96P48 1450 aa13.5□□□□□ -0.25
PDGFRB-207ENST00000520579 RSPH6AQ9H0K4 717 aa13.5□□□□□ -0.25
PDGFRB-207ENST00000520579 MAPKBP1O60336 1514 aa13.49□□□□□ -0.25
PDGFRB-207ENST00000520579 C11orf95C9JLR9 678 aaPredicted RBP13.49□□□□□ -0.25
PDGFRB-207ENST00000520579 EIF4G2P78344 907 aaKnown RBP eCLIP13.49□□□□□ -0.25
PDGFRB-207ENST00000520579 SMARCA2P51531 1590 aa13.49□□□□□ -0.25
PDGFRB-207ENST00000520579 EXOC6Q8TAG9 804 aa13.48□□□□□ -0.25
PDGFRB-207ENST00000520579 PAXIP1Q6ZW49 1069 aaPredicted RBP13.47□□□□□ -0.25
PDGFRB-207ENST00000520579 PRKRIP1Q9H875 184 aaPredicted RBP13.46□□□□□ -0.25
PDGFRB-207ENST00000520579 PLIN1O60240 522 aa13.46□□□□□ -0.26
PDGFRB-207ENST00000520579 PHLDB1Q86UU1 1377 aa13.45□□□□□ -0.26
PDGFRB-207ENST00000520579 SYNJ1O43426 1573 aa13.45□□□□□ -0.26
PDGFRB-207ENST00000520579 TOP2AP11388 1531 aaKnown RBP13.44□□□□□ -0.26
PDGFRB-207ENST00000520579 PDE4AP27815 886 aa13.44□□□□□ -0.26
PDGFRB-207ENST00000520579 HSP90AA2PQ14568 343 aaPredicted RBP13.44□□□□□ -0.26
PDGFRB-207ENST00000520579 FRAT1Q92837 279 aaPredicted RBP13.44□□□□□ -0.26
PDGFRB-207ENST00000520579 TMC1Q8TDI8 760 aa13.43□□□□□ -0.26
PDGFRB-207ENST00000520579 RRBP1Q9P2E9 1410 aaKnown RBP13.43□□□□□ -0.26
PDGFRB-207ENST00000520579 ZBED9Q6R2W3 1325 aa13.39□□□□□ -0.27
PDGFRB-207ENST00000520579 RGS3P49796 1198 aa13.39□□□□□ -0.27
PDGFRB-207ENST00000520579 GSE1Q14687 1217 aa13.39□□□□□ -0.27
PDGFRB-207ENST00000520579 TAF7LQ5H9L4 462 aa13.38□□□□□ -0.27
PDGFRB-207ENST00000520579 NUDCQ9Y266 331 aa13.38□□□□□ -0.27
PDGFRB-207ENST00000520579 L3MBTL2Q969R5 705 aa13.38□□□□□ -0.27
PDGFRB-207ENST00000520579 NFKBIBQ15653 356 aa13.37□□□□□ -0.27
PDGFRB-207ENST00000520579 DNAJC5BQ9UF47 199 aa13.37□□□□□ -0.27
PDGFRB-207ENST00000520579 PPM1GO15355 546 aaPredicted RBP13.36□□□□□ -0.27
PDGFRB-207ENST00000520579 NAP1L5Q96NT1 182 aaPredicted RBP13.36□□□□□ -0.27
PDGFRB-207ENST00000520579 PEG3Q9GZU2 1588 aa13.36□□□□□ -0.27
PDGFRB-207ENST00000520579 DHX37Q8IY37 1157 aaKnown RBP13.35□□□□□ -0.27
PDGFRB-207ENST00000520579 ATAD2BQ9ULI0 1458 aa13.35□□□□□ -0.27
PDGFRB-207ENST00000520579 FRAT2O75474 233 aaPredicted RBP13.34□□□□□ -0.27
PDGFRB-207ENST00000520579 SPRYD3Q8NCJ5 442 aa13.33□□□□□ -0.28
PDGFRB-207ENST00000520579 SLKQ9H2G2 1235 aaPredicted RBP13.31□□□□□ -0.28
PDGFRB-207ENST00000520579 KDM2AQ9Y2K7 1162 aa13.31□□□□□ -0.28
PDGFRB-207ENST00000520579 HSP90AA1P07900 732 aaKnown RBP13.3□□□□□ -0.28
PDGFRB-207ENST00000520579 CDCA7LQ96GN5 454 aa13.3□□□□□ -0.28
PDGFRB-207ENST00000520579 GZF1Q9H116 711 aaPredicted RBP13.3□□□□□ -0.28
PDGFRB-207ENST00000520579 CHMP4BQ9H444 224 aaKnown RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms