RNA–Protein interactions for RNA: ENST00000515144.5

TRIO-222, Transcript of trio Rho guanine nucleotide exchange factor, humanhuman

TSL 1 (best)

Gene TRIO, Length 7,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIO-222ENST00000515144 PLEKHD1A6NEE1 506 aa19.53■□□□□ 0.72
TRIO-222ENST00000515144 NACADO15069 1562 aa19.52■□□□□ 0.72
TRIO-222ENST00000515144 PPM1GO15355 546 aaPredicted RBP19.52■□□□□ 0.72
TRIO-222ENST00000515144 GTF3C3Q9Y5Q9 886 aa19.52■□□□□ 0.72
TRIO-222ENST00000515144 WDR43Q15061 677 aaKnown RBP eCLIP19.46■□□□□ 0.71
TRIO-222ENST00000515144 HNRNPUQ00839 825 aaKnown RBP eCLIP19.45■□□□□ 0.7
TRIO-222ENST00000515144 HSP90AA1P07900 732 aaKnown RBP19.42■□□□□ 0.7
TRIO-222ENST00000515144 CFDP1Q9UEE9 299 aaPredicted RBP19.36■□□□□ 0.69
TRIO-222ENST00000515144 CLIP1P30622 1438 aa19.35■□□□□ 0.69
TRIO-222ENST00000515144 SOX12O15370 315 aa19.35■□□□□ 0.69
TRIO-222ENST00000515144 NPHP1O15259 732 aa19.34■□□□□ 0.69
TRIO-222ENST00000515144 TNNT2P45379 298 aaPredicted RBP19.32■□□□□ 0.68
TRIO-222ENST00000515144 FKBP8Q14318 412 aa19.29■□□□□ 0.68
TRIO-222ENST00000515144 LAS1LQ9Y4W2 734 aaKnown RBP19.29■□□□□ 0.68
TRIO-222ENST00000515144 IRX6P78412 446 aaPredicted RBP19.27■□□□□ 0.68
TRIO-222ENST00000515144 POGKQ9P215 609 aa19.27■□□□□ 0.67
TRIO-222ENST00000515144 TULP1O00294 542 aaPredicted RBP19.26■□□□□ 0.67
TRIO-222ENST00000515144 SAFB2Q14151 953 aaKnown RBP eCLIP19.25■□□□□ 0.67
TRIO-222ENST00000515144 DCAF1Q9Y4B6 1507 aa19.24■□□□□ 0.67
TRIO-222ENST00000515144 RSF1Q96T23 1441 aaPredicted RBP19.24■□□□□ 0.67
TRIO-222ENST00000515144 ANP32AP39687 249 aaKnown RBP19.23■□□□□ 0.67
TRIO-222ENST00000515144 WRNQ14191 1432 aaPredicted RBP eCLIP19.23■□□□□ 0.67
TRIO-222ENST00000515144 MRS2Q9HD23 443 aa19.23■□□□□ 0.67
TRIO-222ENST00000515144 CECR2Q9BXF3 1484 aa19.22■□□□□ 0.67
TRIO-222ENST00000515144 TAOK2Q9UL54 1235 aa19.22■□□□□ 0.67
TRIO-222ENST00000515144 KIF27Q86VH2 1401 aa19.22■□□□□ 0.67
TRIO-222ENST00000515144 NEUROD2Q15784 382 aa19.19■□□□□ 0.66
TRIO-222ENST00000515144 GOLGA3Q08378 1498 aa19.18■□□□□ 0.66
TRIO-222ENST00000515144 GGT6Q6P531 493 aa19.17■□□□□ 0.66
TRIO-222ENST00000515144 UPF2Q9HAU5 1272 aaKnown RBP19.17■□□□□ 0.66
TRIO-222ENST00000515144 MYH16Q9H6N6 1097 aa19.14■□□□□ 0.66
TRIO-222ENST00000515144 STK26Q9P289 416 aa19.14■□□□□ 0.66
TRIO-222ENST00000515144 EIF4G2P78344 907 aaKnown RBP eCLIP19.13■□□□□ 0.65
TRIO-222ENST00000515144 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.12■□□□□ 0.65
TRIO-222ENST00000515144 WIZO95785 1651 aa19.12■□□□□ 0.65
TRIO-222ENST00000515144 BAZ1AQ9NRL2 1556 aaPredicted RBP19.12■□□□□ 0.65
TRIO-222ENST00000515144 ABCC8Q09428 1581 aa19.12■□□□□ 0.65
TRIO-222ENST00000515144 CEP162Q5TB80 1403 aa19.12■□□□□ 0.65
TRIO-222ENST00000515144 TPRNQ4KMQ1 711 aa19.11■□□□□ 0.65
TRIO-222ENST00000515144 CUX2O14529 1486 aa19.11■□□□□ 0.65
TRIO-222ENST00000515144 MYO15BQ96JP2 1530 aa19.1■□□□□ 0.65
TRIO-222ENST00000515144 PAK3O75914 559 aaPredicted RBP19.09■□□□□ 0.65
TRIO-222ENST00000515144 CARD11Q9BXL7 1154 aa19.09■□□□□ 0.65
TRIO-222ENST00000515144 CCDC136Q96JN2 1154 aa19.09■□□□□ 0.65
TRIO-222ENST00000515144 CC2D1BQ5T0F9 858 aaKnown RBP19.08■□□□□ 0.64
TRIO-222ENST00000515144 KNSTRNQ9Y448 316 aa19.07■□□□□ 0.64
TRIO-222ENST00000515144 U2SURPO15042 1029 aaKnown RBP19.03■□□□□ 0.64
TRIO-222ENST00000515144 SRPK2P78362 688 aaKnown RBP19.03■□□□□ 0.64
TRIO-222ENST00000515144 CCNB3Q8WWL7 1395 aa19.02■□□□□ 0.64
TRIO-222ENST00000515144 CCDC9Q9Y3X0 531 aaKnown RBP19.02■□□□□ 0.63
TRIO-222ENST00000515144 PRDM2Q13029 1718 aa19.01■□□□□ 0.63
TRIO-222ENST00000515144 NUTM2DQ5VT03 806 aaPredicted RBP19■□□□□ 0.63
TRIO-222ENST00000515144 CFAP53Q96M91 514 aa19■□□□□ 0.63
TRIO-222ENST00000515144 DCAF11Q8TEB1 546 aa18.99■□□□□ 0.63
TRIO-222ENST00000515144 KANK1Q14678 1352 aa18.99■□□□□ 0.63
TRIO-222ENST00000515144 SIN3AQ96ST3 1273 aa18.98■□□□□ 0.63
TRIO-222ENST00000515144 FOXD1Q16676 465 aa18.98■□□□□ 0.63
TRIO-222ENST00000515144 AEBP2Q6ZN18 517 aaPredicted RBP18.97■□□□□ 0.63
TRIO-222ENST00000515144 SMARCA2P51531 1590 aa18.97■□□□□ 0.63
TRIO-222ENST00000515144 ANP32BQ92688 251 aaKnown RBP18.96■□□□□ 0.63
TRIO-222ENST00000515144 CARMIL1Q5VZK9 1371 aa18.96■□□□□ 0.63
TRIO-222ENST00000515144 NBR1Q14596 966 aa18.95■□□□□ 0.62
TRIO-222ENST00000515144 CYB5RLQ6IPT4 315 aa18.95■□□□□ 0.62
TRIO-222ENST00000515144 CEP164Q9UPV0 1460 aa18.95■□□□□ 0.62
TRIO-222ENST00000515144 TDRD9Q8NDG6 1382 aaKnown RBP18.94■□□□□ 0.62
TRIO-222ENST00000515144 FTSJ3Q8IY81 847 aaKnown RBP18.94■□□□□ 0.62
TRIO-222ENST00000515144 MAPK8IP3Q9UPT6 1336 aa18.93■□□□□ 0.62
TRIO-222ENST00000515144 ACIN1Q9UKV3 1341 aaKnown RBP18.93■□□□□ 0.62
TRIO-222ENST00000515144 ZNF330Q9Y3S2 320 aaPredicted RBP18.93■□□□□ 0.62
TRIO-222ENST00000515144 SOGA1O94964 1423 aa18.92■□□□□ 0.62
TRIO-222ENST00000515144 NUTM2FA1L443 756 aa18.91■□□□□ 0.62
TRIO-222ENST00000515144 PDS5BQ9NTI5 1447 aa18.9■□□□□ 0.62
TRIO-222ENST00000515144 MIER1Q8N108 512 aa18.9■□□□□ 0.62
TRIO-222ENST00000515144 GOLGA2Q08379 1002 aa18.89■□□□□ 0.62
TRIO-222ENST00000515144 CDCA8Q53HL2 280 aa18.88■□□□□ 0.61
TRIO-222ENST00000515144 HDGFP51858 240 aaKnown RBP18.87■□□□□ 0.61
TRIO-222ENST00000515144 MROH2BQ7Z745 1585 aa18.87■□□□□ 0.61
TRIO-222ENST00000515144 OS9Q13438 667 aaPredicted RBP18.87■□□□□ 0.61
TRIO-222ENST00000515144 FRAT1Q92837 279 aaPredicted RBP18.87■□□□□ 0.61
TRIO-222ENST00000515144 CCDC88BA6NC98 1476 aa18.86■□□□□ 0.61
TRIO-222ENST00000515144 CSB-PGBD3P0DP91 1061 aa18.86■□□□□ 0.61
TRIO-222ENST00000515144 CDK11BP21127 795 aaKnown RBP18.83■□□□□ 0.61
TRIO-222ENST00000515144 CARMIL2Q6F5E8 1435 aa18.83■□□□□ 0.6
TRIO-222ENST00000515144 HNRNPMP52272 730 aaKnown RBP eCLIP18.82■□□□□ 0.62e-6■■■□□ 18.9
TRIO-222ENST00000515144 NAP1L2Q9ULW6 460 aaPredicted RBP18.82■□□□□ 0.6
TRIO-222ENST00000515144 EEA1Q15075 1411 aa18.81■□□□□ 0.6
TRIO-222ENST00000515144 NUDCQ9Y266 331 aa18.81■□□□□ 0.6
TRIO-222ENST00000515144 KAT6BQ8WYB5 2073 aa18.81■□□□□ 0.6
TRIO-222ENST00000515144 NCBP3Q53F19 620 aaKnown RBP18.79■□□□□ 0.6
TRIO-222ENST00000515144 ISY1Q9ULR0 285 aaKnown RBP18.79■□□□□ 0.6
TRIO-222ENST00000515144 FHAD1B1AJZ9 1412 aa18.78■□□□□ 0.6
TRIO-222ENST00000515144 KIF3BO15066 747 aa18.76■□□□□ 0.59
TRIO-222ENST00000515144 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.75■□□□□ 0.59
TRIO-222ENST00000515144 TMF1P82094 1093 aa18.73■□□□□ 0.59
TRIO-222ENST00000515144 ARHGAP35Q9NRY4 1499 aa18.72■□□□□ 0.59
TRIO-222ENST00000515144 RTF1Q92541 710 aaKnown RBP18.72■□□□□ 0.59
TRIO-222ENST00000515144 PKD2Q13563 968 aa18.71■□□□□ 0.59
TRIO-222ENST00000515144 MORC1Q86VD1 984 aa18.71■□□□□ 0.59
TRIO-222ENST00000515144 LTV1Q96GA3 475 aaPredicted RBP18.71■□□□□ 0.59
TRIO-222ENST00000515144 CASC1Q6TDU7 716 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms