RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 ARID4BQ4LE39 1312 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-218ENST00000513024 PPM1GO15355 546 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-218ENST00000513024 MROH2BQ7Z745 1585 aa11.58□□□□□ -0.56
LIMCH1-218ENST00000513024 P3H3Q8IVL6 736 aa11.58□□□□□ -0.56
LIMCH1-218ENST00000513024 DDRGK1Q96HY6 314 aa11.58□□□□□ -0.56
LIMCH1-218ENST00000513024 C14orf37Q86TY3 774 aa11.56□□□□□ -0.56
LIMCH1-218ENST00000513024 ARID3CA6NKF2 412 aa11.56□□□□□ -0.56
LIMCH1-218ENST00000513024 PTMAP06454 111 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-218ENST00000513024 DEKP35659 375 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-218ENST00000513024 TNNT3P45378 269 aaPredicted RBP11.55□□□□□ -0.56
LIMCH1-218ENST00000513024 CSRNP3Q8WYN3 585 aa11.55□□□□□ -0.56
LIMCH1-218ENST00000513024 HAP1P54257 671 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-218ENST00000513024 ZNF777Q9ULD5 760 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-218ENST00000513024 TONSLQ96HA7 1378 aa11.53□□□□□ -0.56
LIMCH1-218ENST00000513024 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.53□□□□□ -0.56
LIMCH1-218ENST00000513024 CHGAP10645 457 aaKnown RBP11.52□□□□□ -0.56
LIMCH1-218ENST00000513024 GOLGA6L22H0YM25 854 aa11.52□□□□□ -0.57
LIMCH1-218ENST00000513024 BECN1Q14457 450 aa11.52□□□□□ -0.57
LIMCH1-218ENST00000513024 UNC13AQ9UPW8 1703 aa11.52□□□□□ -0.57
LIMCH1-218ENST00000513024 HIRIP3Q9BW71 556 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-218ENST00000513024 TMC1Q8TDI8 760 aa11.5□□□□□ -0.57
LIMCH1-218ENST00000513024 MRS2Q9HD23 443 aa11.5□□□□□ -0.57
LIMCH1-218ENST00000513024 VSIG10Q8N0Z9 540 aa11.48□□□□□ -0.57
LIMCH1-218ENST00000513024 PPP1R15AO75807 674 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-218ENST00000513024 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-218ENST00000513024 CEP162Q5TB80 1403 aa11.47□□□□□ -0.57
LIMCH1-218ENST00000513024 WIZO95785 1651 aa11.46□□□□□ -0.58
LIMCH1-218ENST00000513024 NOP58Q9Y2X3 529 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-218ENST00000513024 PTMSP20962 102 aa11.45□□□□□ -0.58
LIMCH1-218ENST00000513024 A0A0G2JS52 829 aa11.45□□□□□ -0.58
LIMCH1-218ENST00000513024 TNIKQ9UKE5 1360 aa11.44□□□□□ -0.58
LIMCH1-218ENST00000513024 CALRP27797 417 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-218ENST00000513024 PNNQ9H307 717 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-218ENST00000513024 BAZ1AQ9NRL2 1556 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-218ENST00000513024 CHAF1AQ13111 956 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-218ENST00000513024 PODXL2Q9NZ53 605 aa11.41□□□□□ -0.58
LIMCH1-218ENST00000513024 CCDC88BA6NC98 1476 aa11.41□□□□□ -0.58
LIMCH1-218ENST00000513024 SENP3-EIF4A1A0A087X0R7 540 aa11.41□□□□□ -0.58
LIMCH1-218ENST00000513024 TSPY4P0CV99 314 aa11.41□□□□□ -0.58
LIMCH1-218ENST00000513024 TSPY10P0CW01 314 aa11.41□□□□□ -0.58
LIMCH1-218ENST00000513024 L1TD1Q5T7N2 865 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-218ENST00000513024 SOGA1O94964 1423 aa11.4□□□□□ -0.58
LIMCH1-218ENST00000513024 HSP90AA2PQ14568 343 aaPredicted RBP11.4□□□□□ -0.58
LIMCH1-218ENST00000513024 WRNQ14191 1432 aaPredicted RBP eCLIP11.4□□□□□ -0.58
LIMCH1-218ENST00000513024 LAS1LQ9Y4W2 734 aaKnown RBP11.4□□□□□ -0.59
LIMCH1-218ENST00000513024 MSNP26038 577 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-218ENST00000513024 BICRAQ9NZM4 1560 aa11.39□□□□□ -0.59
LIMCH1-218ENST00000513024 SUPT16HQ9Y5B9 1047 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-218ENST00000513024 EEA1Q15075 1411 aa11.39□□□□□ -0.59
LIMCH1-218ENST00000513024 HDGFP51858 240 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-218ENST00000513024 ABCC8Q09428 1581 aa11.37□□□□□ -0.59
LIMCH1-218ENST00000513024 PRKCSHP14314 528 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-218ENST00000513024 WDR43Q15061 677 aaKnown RBP eCLIP11.36□□□□□ -0.59
LIMCH1-218ENST00000513024 CHIC2Q9UKJ5 165 aa11.36□□□□□ -0.59
LIMCH1-218ENST00000513024 RSPH6AQ9H0K4 717 aa11.35□□□□□ -0.59
LIMCH1-218ENST00000513024 A0A0U1RQG5 324 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-218ENST00000513024 DCAF8L1A6NGE4 600 aa11.34□□□□□ -0.59
LIMCH1-218ENST00000513024 PLEKHD1A6NEE1 506 aa11.34□□□□□ -0.59
LIMCH1-218ENST00000513024 FOXD1Q16676 465 aa11.34□□□□□ -0.59
LIMCH1-218ENST00000513024 PKNOX2Q96KN3 472 aa11.33□□□□□ -0.59
LIMCH1-218ENST00000513024 BAZ1BQ9UIG0 1483 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-218ENST00000513024 ZRSR1Q15695 479 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-218ENST00000513024 KDM2AQ9Y2K7 1162 aa11.32□□□□□ -0.6
LIMCH1-218ENST00000513024 GOLGA3Q08378 1498 aa11.32□□□□□ -0.6
LIMCH1-218ENST00000513024 NRDCO43847 1150 aa11.31□□□□□ -0.6
LIMCH1-218ENST00000513024 KCNH8Q96L42 1107 aa11.31□□□□□ -0.6
LIMCH1-218ENST00000513024 ARID3AQ99856 593 aa11.3□□□□□ -0.6
LIMCH1-218ENST00000513024 APPP05067 770 aa11.29□□□□□ -0.6
LIMCH1-218ENST00000513024 TOP2AP11388 1531 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-218ENST00000513024 PLCB2Q00722 1185 aa11.29□□□□□ -0.6
LIMCH1-218ENST00000513024 EIF4G2P78344 907 aaKnown RBP eCLIP11.28□□□□□ -0.6
LIMCH1-218ENST00000513024 RUSC2Q8N2Y8 1516 aa11.28□□□□□ -0.6
LIMCH1-218ENST00000513024 GOLGA6L6A8MZA4 724 aa11.28□□□□□ -0.6
LIMCH1-218ENST00000513024 CLIP1P30622 1438 aa11.28□□□□□ -0.6
LIMCH1-218ENST00000513024 B4GALNT3Q6L9W6 998 aa11.26□□□□□ -0.61
LIMCH1-218ENST00000513024 PPP4R2Q9NY27 417 aa11.25□□□□□ -0.61
LIMCH1-218ENST00000513024 TPRNQ4KMQ1 711 aa11.25□□□□□ -0.61
LIMCH1-218ENST00000513024 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.24□□□□□ -0.61
LIMCH1-218ENST00000513024 MYH16Q9H6N6 1097 aa11.24□□□□□ -0.61
LIMCH1-218ENST00000513024 RBM19Q9Y4C8 960 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-218ENST00000513024 RGS3P49796 1198 aa11.23□□□□□ -0.61
LIMCH1-218ENST00000513024 CEP164Q9UPV0 1460 aa11.23□□□□□ -0.61
LIMCH1-218ENST00000513024 PDS5BQ9NTI5 1447 aa11.22□□□□□ -0.61
LIMCH1-218ENST00000513024 SMARCA2P51531 1590 aa11.21□□□□□ -0.61
LIMCH1-218ENST00000513024 NPHP1O15259 732 aa11.21□□□□□ -0.62
LIMCH1-218ENST00000513024 ZBTB7CA1YPR0 619 aa11.2□□□□□ -0.62
LIMCH1-218ENST00000513024 SMARCA4P51532 1647 aa11.2□□□□□ -0.62
LIMCH1-218ENST00000513024 KIAA2012Q0VF49 1180 aa11.2□□□□□ -0.62
LIMCH1-218ENST00000513024 SETQ01105 290 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-218ENST00000513024 VPS8Q8N3P4 1428 aa11.18□□□□□ -0.62
LIMCH1-218ENST00000513024 EIF4G1Q04637 1599 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-218ENST00000513024 RRP7BPQ9NSQ0 103 aa11.17□□□□□ -0.62
LIMCH1-218ENST00000513024 GOLGA6L1Q8N7Z2 621 aa11.16□□□□□ -0.62
LIMCH1-218ENST00000513024 LMOD2Q6P5Q4 547 aa11.14□□□□□ -0.63
LIMCH1-218ENST00000513024 NEUROD2Q15784 382 aa11.13□□□□□ -0.63
LIMCH1-218ENST00000513024 TIMELESSQ9UNS1 1208 aa11.13□□□□□ -0.63
LIMCH1-218ENST00000513024 GOLGA6L3A6NEY3 463 aa11.12□□□□□ -0.63
LIMCH1-218ENST00000513024 SIN3AQ96ST3 1273 aa11.12□□□□□ -0.63
LIMCH1-218ENST00000513024 SENP3Q9H4L4 574 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-218ENST00000513024 MTUS2Q5JR59 1369 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms