RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, human

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VCAN-208	ENST00000512590	FOXD1	Q16676	465 aa		11.87	□□□□□ -0.51
VCAN-208	ENST00000512590	KLHL34	Q8N239	644 aa		11.86	□□□□□ -0.51
VCAN-208	ENST00000512590	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	11.85	□□□□□ -0.51
VCAN-208	ENST00000512590	MEX3C	Q5U5Q3	659 aa	Known RBP	11.85	□□□□□ -0.51
VCAN-208	ENST00000512590	WDR43	Q15061	677 aa	Known RBP eCLIP	11.84	□□□□□ -0.51
VCAN-208	ENST00000512590	ANP32A	P39687	249 aa	Known RBP	11.84	□□□□□ -0.51
VCAN-208	ENST00000512590	CWC22	Q9HCG8	908 aa	Known RBP	11.83	□□□□□ -0.52
VCAN-208	ENST00000512590	ANP32E	Q9BTT0	268 aa		11.82	□□□□□ -0.52
VCAN-208	ENST00000512590	MSH5	O43196	834 aa		11.81	□□□□□ -0.52
VCAN-208	ENST00000512590	KCNH8	Q96L42	1107 aa		11.81	□□□□□ -0.52
VCAN-208	ENST00000512590	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.8	□□□□□ -0.52
VCAN-208	ENST00000512590	PPM1G	O15355	546 aa	Predicted RBP	11.8	□□□□□ -0.52
VCAN-208	ENST00000512590	TRIM26	Q12899	539 aa	Predicted RBP	11.79	□□□□□ -0.52
VCAN-208	ENST00000512590	OS9	Q13438	667 aa	Predicted RBP	11.78	□□□□□ -0.52
VCAN-208	ENST00000512590	FGD1	P98174	961 aa		11.78	□□□□□ -0.52
VCAN-208	ENST00000512590	TMC1	Q8TDI8	760 aa		11.78	□□□□□ -0.52
VCAN-208	ENST00000512590	SALL2	Q9Y467	1007 aa	Predicted RBP	11.77	□□□□□ -0.53
VCAN-208	ENST00000512590	TPRN	Q4KMQ1	711 aa		11.76	□□□□□ -0.53
VCAN-208	ENST00000512590	TSPY4	P0CV99	314 aa		11.75	□□□□□ -0.53
VCAN-208	ENST00000512590	TSPY10	P0CW01	314 aa		11.75	□□□□□ -0.53
VCAN-208	ENST00000512590	ABCC9	O60706	1549 aa		11.75	□□□□□ -0.53
VCAN-208	ENST00000512590	CSB-PGBD3	P0DP91	1061 aa		11.75	□□□□□ -0.53
VCAN-208	ENST00000512590	MLEC	Q14165	292 aa		11.74	□□□□□ -0.53
VCAN-208	ENST00000512590	CASC1	Q6TDU7	716 aa		11.74	□□□□□ -0.53
VCAN-208	ENST00000512590	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.74	□□□□□ -0.53
VCAN-208	ENST00000512590	HDGF	P51858	240 aa	Known RBP	11.71	□□□□□ -0.54
VCAN-208	ENST00000512590	POGK	Q9P215	609 aa		11.71	□□□□□ -0.54
VCAN-208	ENST00000512590	KDM2A	Q9Y2K7	1162 aa		11.71	□□□□□ -0.54
VCAN-208	ENST00000512590	PDE4C	Q08493	712 aa		11.7	□□□□□ -0.54
VCAN-208	ENST00000512590	KIAA2012	Q0VF49	1180 aa		11.69	□□□□□ -0.54
VCAN-208	ENST00000512590	CTDP1	Q9Y5B0	961 aa	Predicted RBP	11.69	□□□□□ -0.54
VCAN-208	ENST00000512590	FBXO3	Q9UK99	471 aa		11.68	□□□□□ -0.54
VCAN-208	ENST00000512590	GOLGA6L6	A8MZA4	724 aa		11.68	□□□□□ -0.54
VCAN-208	ENST00000512590	KCNJ4	P48050	445 aa		11.68	□□□□□ -0.54
VCAN-208	ENST00000512590	LAS1L	Q9Y4W2	734 aa	Known RBP	11.67	□□□□□ -0.54
VCAN-208	ENST00000512590	CFAP53	Q96M91	514 aa		11.67	□□□□□ -0.54
VCAN-208	ENST00000512590	PNN	Q9H307	717 aa	Known RBP	11.67	□□□□□ -0.54
VCAN-208	ENST00000512590	EIF5B	O60841	1220 aa	Known RBP	11.67	□□□□□ -0.54
VCAN-208	ENST00000512590	VPS53	Q5VIR6	699 aa		11.66	□□□□□ -0.54
VCAN-208	ENST00000512590	NBR1	Q14596	966 aa		11.65	□□□□□ -0.54
VCAN-208	ENST00000512590	L1TD1	Q5T7N2	865 aa	Known RBP	11.65	□□□□□ -0.54
VCAN-208	ENST00000512590	CHAF1A	Q13111	956 aa	Predicted RBP	11.65	□□□□□ -0.55
VCAN-208	ENST00000512590	NOC3L	Q8WTT2	800 aa	Known RBP	11.64	□□□□□ -0.55
VCAN-208	ENST00000512590	GNL2	Q13823	731 aa	Known RBP	11.64	□□□□□ -0.55
VCAN-208	ENST00000512590	GTF2E1	P29083	439 aa	Predicted RBP	11.63	□□□□□ -0.55
VCAN-208	ENST00000512590	NEUROD2	Q15784	382 aa		11.63	□□□□□ -0.55
VCAN-208	ENST00000512590	SOX12	O15370	315 aa		11.63	□□□□□ -0.55
VCAN-208	ENST00000512590	PTMA	P06454	111 aa	Known RBP	11.62	□□□□□ -0.55
VCAN-208	ENST00000512590	SF3B2	Q13435	895 aa	Known RBP	11.61	□□□□□ -0.55
VCAN-208	ENST00000512590	GOLGA6L22	H0YM25	854 aa		11.6	□□□□□ -0.55
VCAN-208	ENST00000512590	PAK3	O75914	559 aa	Predicted RBP	11.6	□□□□□ -0.55
VCAN-208	ENST00000512590	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.6	□□□□□ -0.55
VCAN-208	ENST00000512590	TCEAL9	Q9UHQ7	104 aa		11.6	□□□□□ -0.55
VCAN-208	ENST00000512590	WWC1	Q8IX03	1113 aa		11.59	□□□□□ -0.55
VCAN-208	ENST00000512590	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.59	□□□□□ -0.55
VCAN-208	ENST00000512590	TRIM34	Q9BYJ4	488 aa		11.59	□□□□□ -0.55
VCAN-208	ENST00000512590	MAPK8IP3	Q9UPT6	1336 aa		11.59	□□□□□ -0.55
VCAN-208	ENST00000512590	NRDC	O43847	1150 aa		11.59	□□□□□ -0.55
VCAN-208	ENST00000512590	CEP89	Q96ST8	783 aa		11.58	□□□□□ -0.56
VCAN-208	ENST00000512590	CHIC2	Q9UKJ5	165 aa		11.58	□□□□□ -0.56
VCAN-208	ENST00000512590	FRAT2	O75474	233 aa	Predicted RBP	11.57	□□□□□ -0.56
VCAN-208	ENST00000512590	GLIPR1L2	Q4G1C9	344 aa		11.57	□□□□□ -0.56
VCAN-208	ENST00000512590	HRC	P23327	699 aa		11.56	□□□□□ -0.56
VCAN-208	ENST00000512590	FAM9B	Q8IZU0	186 aa		11.56	□□□□□ -0.56
VCAN-208	ENST00000512590	MARCH6	O60337	910 aa		11.55	□□□□□ -0.56
VCAN-208	ENST00000512590	TAF7L	Q5H9L4	462 aa		11.55	□□□□□ -0.56
VCAN-208	ENST00000512590	TONSL	Q96HA7	1378 aa		11.55	□□□□□ -0.56
VCAN-208	ENST00000512590	NUDC	Q9Y266	331 aa		11.54	□□□□□ -0.56
VCAN-208	ENST00000512590	PLCB2	Q00722	1185 aa		11.53	□□□□□ -0.56
VCAN-208	ENST00000512590	DNTTIP2	Q5QJE6	756 aa	Known RBP	11.53	□□□□□ -0.56
VCAN-208	ENST00000512590	SRPK2	P78362	688 aa	Known RBP	11.53	□□□□□ -0.56
VCAN-208	ENST00000512590	PPP1R1B	Q9UD71	204 aa	Predicted RBP	11.52	□□□□□ -0.56
VCAN-208	ENST00000512590	FTSJ3	Q8IY81	847 aa	Known RBP	11.52	□□□□□ -0.57
VCAN-208	ENST00000512590	PPP4R2	Q9NY27	417 aa		11.52	□□□□□ -0.57
VCAN-208	ENST00000512590		A0A0U1RQG5	324 aa	Predicted RBP	11.52	□□□□□ -0.57
VCAN-208	ENST00000512590	GORAB	Q5T7V8	394 aa		11.52	□□□□□ -0.57
VCAN-208	ENST00000512590	CCAR1	Q8IX12	1150 aa	Known RBP	11.51	□□□□□ -0.57
VCAN-208	ENST00000512590	GOLGA6L4	A6NEF3	574 aa		11.51	□□□□□ -0.57
VCAN-208	ENST00000512590	PLEKHD1	A6NEE1	506 aa		11.5	□□□□□ -0.57
VCAN-208	ENST00000512590	FBXW7	Q969H0	707 aa		11.5	□□□□□ -0.57
VCAN-208	ENST00000512590	RAD21	O60216	631 aa		11.49	□□□□□ -0.57
VCAN-208	ENST00000512590	CFAP44	Q96MT7	982 aa		11.49	□□□□□ -0.57
VCAN-208	ENST00000512590	RTF1	Q92541	710 aa	Known RBP	11.49	□□□□□ -0.57
VCAN-208	ENST00000512590	RASSF8	Q8NHQ8	419 aa		11.49	□□□□□ -0.57
VCAN-208	ENST00000512590	CHMP3	Q9Y3E7	222 aa		11.48	□□□□□ -0.57
VCAN-208	ENST00000512590	EVA1C	P58658	441 aa		11.48	□□□□□ -0.57
VCAN-208	ENST00000512590	PAF1	Q8N7H5	531 aa		11.48	□□□□□ -0.57
VCAN-208	ENST00000512590	VSIG10	Q8N0Z9	540 aa		11.47	□□□□□ -0.57
VCAN-208	ENST00000512590	MAP3K9	P80192	1104 aa		11.47	□□□□□ -0.57
VCAN-208	ENST00000512590	BECN1	Q14457	450 aa		11.47	□□□□□ -0.57
VCAN-208	ENST00000512590	LOC105371045	A0A1W2PR82	267 aa		11.46	□□□□□ -0.57
VCAN-208	ENST00000512590	TNNT2	P45379	298 aa	Predicted RBP	11.46	□□□□□ -0.57
VCAN-208	ENST00000512590	RGL3	Q3MIN7	710 aa		11.46	□□□□□ -0.58
VCAN-208	ENST00000512590	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	11.46	□□□□□ -0.58
VCAN-208	ENST00000512590	ERCC6	Q03468	1493 aa		11.46	□□□□□ -0.58
VCAN-208	ENST00000512590	PPM1F	P49593	454 aa	Predicted RBP	11.46	□□□□□ -0.58
VCAN-208	ENST00000512590	CDCA8	Q53HL2	280 aa		11.45	□□□□□ -0.58
VCAN-208	ENST00000512590	NOL10	Q9BSC4	688 aa	Known RBP	11.44	□□□□□ -0.58
VCAN-208	ENST00000512590	WDR70	Q9NW82	654 aa		11.44	□□□□□ -0.58
VCAN-208	ENST00000512590	CHMP4B	Q9H444	224 aa	Known RBP	11.44	□□□□□ -0.58

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