RNA–Protein interactions for RNA: ENST00000511633.5

NEK1-207, Transcript of NIMA related kinase 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NEK1, Length 5,536 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-207ENST00000511633 ANP32AP39687 249 aaKnown RBP12.22□□□□□ -0.45
NEK1-207ENST00000511633 SCAF1Q9H7N4 1312 aaKnown RBP12.22□□□□□ -0.45
NEK1-207ENST00000511633 WDR43Q15061 677 aaKnown RBP eCLIP12.21□□□□□ -0.45
NEK1-207ENST00000511633 MRS2Q9HD23 443 aa12.2□□□□□ -0.46
NEK1-207ENST00000511633 CECR2Q9BXF3 1484 aa12.2□□□□□ -0.46
NEK1-207ENST00000511633 BAZ1AQ9NRL2 1556 aaPredicted RBP12.2□□□□□ -0.46
NEK1-207ENST00000511633 RGL3Q3MIN7 710 aa12.19□□□□□ -0.46
NEK1-207ENST00000511633 PLEKHG5O94827 1062 aa12.19□□□□□ -0.46
NEK1-207ENST00000511633 CFDP1Q9UEE9 299 aaPredicted RBP12.19□□□□□ -0.46
NEK1-207ENST00000511633 PPP1R15AO75807 674 aaPredicted RBP12.19□□□□□ -0.46
NEK1-207ENST00000511633 CEP164Q9UPV0 1460 aa12.17□□□□□ -0.46
NEK1-207ENST00000511633 EIF4G2P78344 907 aaKnown RBP eCLIP12.17□□□□□ -0.46
NEK1-207ENST00000511633 ZBTB7CA1YPR0 619 aa12.16□□□□□ -0.46
NEK1-207ENST00000511633 ARID4BQ4LE39 1312 aaPredicted RBP12.15□□□□□ -0.46
NEK1-207ENST00000511633 TNIKQ9UKE5 1360 aa12.15□□□□□ -0.46
NEK1-207ENST00000511633 MIER1Q8N108 512 aa12.14□□□□□ -0.47
NEK1-207ENST00000511633 C14orf37Q86TY3 774 aa12.14□□□□□ -0.47
NEK1-207ENST00000511633 HSP90AA1P07900 732 aaKnown RBP12.11□□□□□ -0.47
NEK1-207ENST00000511633 A0A0G2JS52 829 aa12.11□□□□□ -0.47
NEK1-207ENST00000511633 EIF4G1Q04637 1599 aaKnown RBP12.11□□□□□ -0.47
NEK1-207ENST00000511633 CCDC136Q96JN2 1154 aa12.11□□□□□ -0.47
NEK1-207ENST00000511633 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.11□□□□□ -0.47
NEK1-207ENST00000511633 IRX6P78412 446 aaPredicted RBP12.1□□□□□ -0.47
NEK1-207ENST00000511633 UPF2Q9HAU5 1272 aaKnown RBP12.09□□□□□ -0.47
NEK1-207ENST00000511633 CUX2O14529 1486 aa12.08□□□□□ -0.47
NEK1-207ENST00000511633 SENP3-EIF4A1A0A087X0R7 540 aa12.07□□□□□ -0.48
NEK1-207ENST00000511633 SOGA1O94964 1423 aa12.06□□□□□ -0.48
NEK1-207ENST00000511633 CARMIL1Q5VZK9 1371 aa12.06□□□□□ -0.48
NEK1-207ENST00000511633 CARD11Q9BXL7 1154 aa12.05□□□□□ -0.48
NEK1-207ENST00000511633 SIN3AQ96ST3 1273 aa12.04□□□□□ -0.48
NEK1-207ENST00000511633 CCNB3Q8WWL7 1395 aa12.04□□□□□ -0.48
NEK1-207ENST00000511633 MROH2BQ7Z745 1585 aa12.03□□□□□ -0.48
NEK1-207ENST00000511633 PPM1GO15355 546 aaPredicted RBP12.02□□□□□ -0.49
NEK1-207ENST00000511633 CCDC88BA6NC98 1476 aa12.01□□□□□ -0.49
NEK1-207ENST00000511633 KNSTRNQ9Y448 316 aa12.01□□□□□ -0.49
NEK1-207ENST00000511633 ABCC8Q09428 1581 aa12□□□□□ -0.49
NEK1-207ENST00000511633 FHAD1B1AJZ9 1412 aa12□□□□□ -0.49
NEK1-207ENST00000511633 MYH16Q9H6N6 1097 aa11.99□□□□□ -0.49
NEK1-207ENST00000511633 CDCA8Q53HL2 280 aa11.99□□□□□ -0.49
NEK1-207ENST00000511633 HAP1P54257 671 aaPredicted RBP11.99□□□□□ -0.49
NEK1-207ENST00000511633 CFAP53Q96M91 514 aa11.98□□□□□ -0.49
NEK1-207ENST00000511633 POGKQ9P215 609 aa11.97□□□□□ -0.49
NEK1-207ENST00000511633 MLECQ14165 292 aa11.95□□□□□ -0.5
NEK1-207ENST00000511633 TRHP20396 242 aaPredicted RBP11.95□□□□□ -0.5
NEK1-207ENST00000511633 ANP32BQ92688 251 aaKnown RBP11.95□□□□□ -0.5
NEK1-207ENST00000511633 SMARCA2P51531 1590 aa11.95□□□□□ -0.5
NEK1-207ENST00000511633 TNNT2P45379 298 aaPredicted RBP11.94□□□□□ -0.5
NEK1-207ENST00000511633 NEUROD2Q15784 382 aa11.94□□□□□ -0.5
NEK1-207ENST00000511633 LMOD2Q6P5Q4 547 aa11.94□□□□□ -0.5
NEK1-207ENST00000511633 TDRD9Q8NDG6 1382 aaKnown RBP11.93□□□□□ -0.5
NEK1-207ENST00000511633 DCAF11Q8TEB1 546 aa11.93□□□□□ -0.5
NEK1-207ENST00000511633 PDS5BQ9NTI5 1447 aa11.93□□□□□ -0.5
NEK1-207ENST00000511633 CC2D1BQ5T0F9 858 aaKnown RBP11.92□□□□□ -0.5
NEK1-207ENST00000511633 NBR1Q14596 966 aa11.91□□□□□ -0.5
NEK1-207ENST00000511633 LAS1LQ9Y4W2 734 aaKnown RBP11.91□□□□□ -0.5
NEK1-207ENST00000511633 KANK1Q14678 1352 aa11.91□□□□□ -0.5
NEK1-207ENST00000511633 ARXQ96QS3 562 aa11.91□□□□□ -0.5
NEK1-207ENST00000511633 KANK4Q5T7N3 995 aaPredicted RBP11.89□□□□□ -0.51
NEK1-207ENST00000511633 ARHGAP35Q9NRY4 1499 aa11.89□□□□□ -0.51
NEK1-207ENST00000511633 MAPK8IP3Q9UPT6 1336 aa11.89□□□□□ -0.51
NEK1-207ENST00000511633 WIZO95785 1651 aa11.89□□□□□ -0.51
NEK1-207ENST00000511633 CARMIL2Q6F5E8 1435 aa11.88□□□□□ -0.51
NEK1-207ENST00000511633 GGT6Q6P531 493 aa11.88□□□□□ -0.51
NEK1-207ENST00000511633 VPS8Q8N3P4 1428 aa11.87□□□□□ -0.51
NEK1-207ENST00000511633 FOXD1Q16676 465 aa11.87□□□□□ -0.51
NEK1-207ENST00000511633 SUPT16HQ9Y5B9 1047 aaKnown RBP11.87□□□□□ -0.51
NEK1-207ENST00000511633 SAFB2Q14151 953 aaKnown RBP eCLIP11.86□□□□□ -0.51
NEK1-207ENST00000511633 NUDCQ9Y266 331 aa11.86□□□□□ -0.51
NEK1-207ENST00000511633 FTSJ3Q8IY81 847 aaKnown RBP11.86□□□□□ -0.51
NEK1-207ENST00000511633 U2SURPO15042 1029 aaKnown RBP11.85□□□□□ -0.51
NEK1-207ENST00000511633 TMF1P82094 1093 aa11.85□□□□□ -0.51
NEK1-207ENST00000511633 SETD5Q9C0A6 1442 aa11.85□□□□□ -0.51
NEK1-207ENST00000511633 TOP2AP11388 1531 aaKnown RBP11.84□□□□□ -0.51
NEK1-207ENST00000511633 PKD2Q13563 968 aa11.84□□□□□ -0.51
NEK1-207ENST00000511633 SOX12O15370 315 aa11.83□□□□□ -0.52
NEK1-207ENST00000511633 SRPK2P78362 688 aaKnown RBP11.83□□□□□ -0.52
NEK1-207ENST00000511633 FRAT1Q92837 279 aaPredicted RBP11.82□□□□□ -0.52
NEK1-207ENST00000511633 STK26Q9P289 416 aa11.81□□□□□ -0.52
NEK1-207ENST00000511633 FMN1Q68DA7 1419 aa11.8□□□□□ -0.52
NEK1-207ENST00000511633 CADPSQ9ULU8 1353 aa11.8□□□□□ -0.52
NEK1-207ENST00000511633 HDGFP51858 240 aaKnown RBP11.79□□□□□ -0.52
NEK1-207ENST00000511633 HSPA5P11021 654 aaKnown RBP11.79□□□□□ -0.52
NEK1-207ENST00000511633 BECN1Q14457 450 aa11.77□□□□□ -0.52
NEK1-207ENST00000511633 FHOD3Q2V2M9 1422 aa11.77□□□□□ -0.52
NEK1-207ENST00000511633 EFCAB2Q5VUJ9 269 aa11.77□□□□□ -0.53
NEK1-207ENST00000511633 NUP155O75694 1391 aa11.77□□□□□ -0.53
NEK1-207ENST00000511633 MORC1Q86VD1 984 aa11.76□□□□□ -0.53
NEK1-207ENST00000511633 MPHOSPH9Q99550 1183 aa11.76□□□□□ -0.53
NEK1-207ENST00000511633 HNRNPMP52272 730 aaKnown RBP eCLIP11.76□□□□□ -0.538e-6■■■■□ 19.5
NEK1-207ENST00000511633 DDRGK1Q96HY6 314 aa11.76□□□□□ -0.53
NEK1-207ENST00000511633 RAB3GAP2Q9H2M9 1393 aa11.75□□□□□ -0.53
NEK1-207ENST00000511633 RAPGEF2Q9Y4G8 1499 aa11.75□□□□□ -0.53
NEK1-207ENST00000511633 EIF5BO60841 1220 aaKnown RBP11.75□□□□□ -0.53
NEK1-207ENST00000511633 RGS3P49796 1198 aa11.75□□□□□ -0.53
NEK1-207ENST00000511633 TIMELESSQ9UNS1 1208 aa11.75□□□□□ -0.53
NEK1-207ENST00000511633 ATAD2BQ9ULI0 1458 aa11.75□□□□□ -0.53
NEK1-207ENST00000511633 CASC1Q6TDU7 716 aa11.74□□□□□ -0.53
NEK1-207ENST00000511633 ANKRD30AQ9BXX3 1397 aa11.74□□□□□ -0.53
NEK1-207ENST00000511633 PNNQ9H307 717 aaKnown RBP11.73□□□□□ -0.53
NEK1-207ENST00000511633 ROCK2O75116 1388 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms