RNA–Protein interactions for RNA: ENST00000504430.5

NIPBL-204, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 3,455 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-204ENST00000504430 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.72□□□□□ -1.01
NIPBL-204ENST00000504430 ARID3CA6NKF2 412 aa8.7□□□□□ -1.02
NIPBL-204ENST00000504430 RNF25Q96BH1 459 aaPredicted RBP8.7□□□□□ -1.02
NIPBL-204ENST00000504430 SAMD1Q6SPF0 538 aaPredicted RBP8.7□□□□□ -1.02
NIPBL-204ENST00000504430 IGSF3O75054 1194 aa8.67□□□□□ -1.02
NIPBL-204ENST00000504430 SLC24A3Q9HC58 644 aa8.67□□□□□ -1.02
NIPBL-204ENST00000504430 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.67□□□□□ -1.02
NIPBL-204ENST00000504430 GTPBP6O43824 516 aaPredicted RBP8.66□□□□□ -1.02
NIPBL-204ENST00000504430 PLCD3Q8N3E9 789 aa8.65□□□□□ -1.02
NIPBL-204ENST00000504430 NECTIN2Q92692 538 aa8.63□□□□□ -1.03
NIPBL-204ENST00000504430 HS6ST3Q8IZP7 471 aa8.63□□□□□ -1.03
NIPBL-204ENST00000504430 KCNV2Q8TDN2 545 aa8.62□□□□□ -1.03
NIPBL-204ENST00000504430 GPBP1L1Q9HC44 474 aaPredicted RBP8.58□□□□□ -1.04
NIPBL-204ENST00000504430 POTEDQ86YR6 584 aa8.57□□□□□ -1.04
NIPBL-204ENST00000504430 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.57□□□□□ -1.04
NIPBL-204ENST00000504430 HNRNPUL2Q1KMD3 747 aaKnown RBP8.57□□□□□ -1.04
NIPBL-204ENST00000504430 ZMYND15Q9H091 742 aa8.57□□□□□ -1.04
NIPBL-204ENST00000504430 MIER1Q8N108 512 aa8.56□□□□□ -1.04
NIPBL-204ENST00000504430 ZC3H15Q8WU90 426 aaKnown RBP8.56□□□□□ -1.04
NIPBL-204ENST00000504430 IL27Q8NEV9 243 aa8.53□□□□□ -1.04
NIPBL-204ENST00000504430 RSPH6AQ9H0K4 717 aa8.53□□□□□ -1.04
NIPBL-204ENST00000504430 APBB1O00213 710 aa8.51□□□□□ -1.05
NIPBL-204ENST00000504430 CADPS2Q86UW7 1296 aa8.51□□□□□ -1.05
NIPBL-204ENST00000504430 STK25O00506 426 aa8.5□□□□□ -1.05
NIPBL-204ENST00000504430 ZNF428Q96B54 188 aa8.5□□□□□ -1.05
NIPBL-204ENST00000504430 CHMP4AQ9BY43 222 aa8.49□□□□□ -1.05
NIPBL-204ENST00000504430 CCDC9Q9Y3X0 531 aaKnown RBP8.49□□□□□ -1.05
NIPBL-204ENST00000504430 POLA2Q14181 598 aa8.48□□□□□ -1.05
NIPBL-204ENST00000504430 SEMA3EO15041 775 aa8.46□□□□□ -1.06
NIPBL-204ENST00000504430 MKRN3Q13064 507 aaKnown RBP8.45□□□□□ -1.06
NIPBL-204ENST00000504430 ZBTB7CA1YPR0 619 aa8.44□□□□□ -1.06
NIPBL-204ENST00000504430 PDIA4P13667 645 aaKnown RBP8.44□□□□□ -1.06
NIPBL-204ENST00000504430 P3H3Q8IVL6 736 aa8.43□□□□□ -1.06
NIPBL-204ENST00000504430 SPINK5Q9NQ38 1064 aaPredicted RBP8.39□□□□□ -1.07
NIPBL-204ENST00000504430 KCTD17Q8N5Z5 321 aa8.38□□□□□ -1.07
NIPBL-204ENST00000504430 DHX37Q8IY37 1157 aaKnown RBP8.37□□□□□ -1.07
NIPBL-204ENST00000504430 CCDC82Q8N4S0 544 aa8.37□□□□□ -1.07
NIPBL-204ENST00000504430 BCL11BQ9C0K0 894 aaPredicted RBP8.37□□□□□ -1.07
NIPBL-204ENST00000504430 SHROOM4Q9ULL8 1493 aa8.37□□□□□ -1.07
NIPBL-204ENST00000504430 STK24Q9Y6E0 443 aa8.37□□□□□ -1.07
NIPBL-204ENST00000504430 RAD21O60216 631 aa8.35□□□□□ -1.07
NIPBL-204ENST00000504430 FOXD4L5Q5VV16 416 aaPredicted RBP8.35□□□□□ -1.07
NIPBL-204ENST00000504430 FOXD4L4Q8WXT5 416 aaPredicted RBP8.35□□□□□ -1.07
NIPBL-204ENST00000504430 CDK11BP21127 795 aaKnown RBP8.35□□□□□ -1.07
NIPBL-204ENST00000504430 CDK11AQ9UQ88 783 aaPredicted RBP8.35□□□□□ -1.07
NIPBL-204ENST00000504430 WDR70Q9NW82 654 aa8.35□□□□□ -1.07
NIPBL-204ENST00000504430 RIOK3O14730 519 aaKnown RBP8.34□□□□□ -1.07
NIPBL-204ENST00000504430 AEBP1Q8IUX7 1158 aa8.34□□□□□ -1.07
NIPBL-204ENST00000504430 ZMYND10O75800 440 aa8.32□□□□□ -1.08
NIPBL-204ENST00000504430 MTMR7Q9Y216 660 aa8.32□□□□□ -1.08
NIPBL-204ENST00000504430 CLUAP1Q96AJ1 413 aa8.31□□□□□ -1.08
NIPBL-204ENST00000504430 KDM4CQ9H3R0 1056 aa8.31□□□□□ -1.08
NIPBL-204ENST00000504430 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.3□□□□□ -1.08
NIPBL-204ENST00000504430 ZFP91Q96JP5 570 aaPredicted RBP8.3□□□□□ -1.08
NIPBL-204ENST00000504430 ZNF692Q9BU19 519 aaPredicted RBP8.3□□□□□ -1.08
NIPBL-204ENST00000504430 STAG3Q9UJ98 1225 aa8.29□□□□□ -1.08
NIPBL-204ENST00000504430 PABPN1Q86U42 306 aaKnown RBP eCLIP8.29□□□□□ -1.08
NIPBL-204ENST00000504430 RBM25P49756 843 aaKnown RBP8.28□□□□□ -1.08
NIPBL-204ENST00000504430 ABCB7O75027 752 aa8.27□□□□□ -1.08
NIPBL-204ENST00000504430 FAM117AQ9C073 453 aa8.26□□□□□ -1.09
NIPBL-204ENST00000504430 RGS22Q8NE09 1264 aa8.26□□□□□ -1.09
NIPBL-204ENST00000504430 TESPA1A2RU30 521 aaPredicted RBP8.24□□□□□ -1.09
NIPBL-204ENST00000504430 DCAF8Q5TAQ9 597 aa8.24□□□□□ -1.09
NIPBL-204ENST00000504430 OSCARQ8IYS5 282 aa8.22□□□□□ -1.09
NIPBL-204ENST00000504430 HSP90B1P14625 803 aaKnown RBP8.22□□□□□ -1.09
NIPBL-204ENST00000504430 RBM26Q5T8P6 1007 aaKnown RBP8.22□□□□□ -1.09
NIPBL-204ENST00000504430 VGFO15240 615 aaPredicted RBP8.19□□□□□ -1.1
NIPBL-204ENST00000504430 BARGINQ6ZT62 677 aa8.19□□□□□ -1.1
NIPBL-204ENST00000504430 ZNF777Q9ULD5 760 aaPredicted RBP8.19□□□□□ -1.1
NIPBL-204ENST00000504430 KRI1Q8N9T8 703 aaKnown RBP8.18□□□□□ -1.1
NIPBL-204ENST00000504430 ZNF316A6NFI3 1004 aaPredicted RBP8.18□□□□□ -1.1
NIPBL-204ENST00000504430 NUBP1P53384 320 aa8.17□□□□□ -1.1
NIPBL-204ENST00000504430 GZF1Q9H116 711 aaPredicted RBP8.17□□□□□ -1.1
NIPBL-204ENST00000504430 PDE4DQ08499 809 aa8.16□□□□□ -1.1
NIPBL-204ENST00000504430 ARHGEF1Q92888 912 aaKnown RBP8.16□□□□□ -1.1
NIPBL-204ENST00000504430 CAPN15O75808 1086 aa8.16□□□□□ -1.1
NIPBL-204ENST00000504430 PYGBP11216 843 aa8.16□□□□□ -1.1
NIPBL-204ENST00000504430 E2F4Q16254 413 aa8.16□□□□□ -1.1
NIPBL-204ENST00000504430 AK7Q96M32 723 aa8.15□□□□□ -1.1
NIPBL-204ENST00000504430 MFAP1P55081 439 aaKnown RBP8.15□□□□□ -1.1
NIPBL-204ENST00000504430 PUS7Q96PZ0 661 aaKnown RBP8.15□□□□□ -1.1
NIPBL-204ENST00000504430 PLEKHG3A1L390 1219 aa8.15□□□□□ -1.11
NIPBL-204ENST00000504430 TRIM66O15016 1216 aa8.13□□□□□ -1.11
NIPBL-204ENST00000504430 PPP1R37O75864 691 aa8.13□□□□□ -1.11
NIPBL-204ENST00000504430 GSE1Q14687 1217 aa8.13□□□□□ -1.11
NIPBL-204ENST00000504430 MLLT3P42568 568 aaPredicted RBP8.13□□□□□ -1.11
NIPBL-204ENST00000504430 TMCO4Q5TGY1 634 aa8.13□□□□□ -1.11
NIPBL-204ENST00000504430 RETREG2Q8NC44 543 aa8.12□□□□□ -1.11
NIPBL-204ENST00000504430 ZBTB47Q9UFB7 747 aaPredicted RBP8.12□□□□□ -1.11
NIPBL-204ENST00000504430 TRAK2O60296 914 aa8.12□□□□□ -1.11
NIPBL-204ENST00000504430 IRF5Q13568 498 aa8.12□□□□□ -1.11
NIPBL-204ENST00000504430 ONECUT3O60422 494 aaPredicted RBP8.1□□□□□ -1.11
NIPBL-204ENST00000504430 FAM9AQ8IZU1 332 aaPredicted RBP8.1□□□□□ -1.11
NIPBL-204ENST00000504430 POM121Q96HA1 1249 aa8.1□□□□□ -1.11
NIPBL-204ENST00000504430 SSUH2Q9Y2M2 353 aa8.1□□□□□ -1.11
NIPBL-204ENST00000504430 UBE2Q2Q8WVN8 375 aa8.09□□□□□ -1.11
NIPBL-204ENST00000504430 USP35Q9P2H5 1018 aa8.08□□□□□ -1.12
NIPBL-204ENST00000504430 POLR3GLQ9BT43 218 aa8.08□□□□□ -1.12
NIPBL-204ENST00000504430 GPIHBP1Q8IV16 184 aa8.07□□□□□ -1.12
NIPBL-204ENST00000504430 RYDENQ9NUL5 291 aaKnown RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms