RNA–Protein interactions for RNA: ENST00000504178.1

SYNPO2-205, Transcript of synaptopodin 2, humanhuman

TSL 1 (best)

Gene SYNPO2, Length 6,779 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO2-205ENST00000504178 MRS2Q9HD23 443 aa9.56□□□□□ -0.88
SYNPO2-205ENST00000504178 RRP7BPQ9NSQ0 103 aa9.55□□□□□ -0.88
SYNPO2-205ENST00000504178 CLIP1P30622 1438 aa9.55□□□□□ -0.88
SYNPO2-205ENST00000504178 RSF1Q96T23 1441 aaPredicted RBP9.54□□□□□ -0.88
SYNPO2-205ENST00000504178 ARID4BQ4LE39 1312 aaPredicted RBP9.53□□□□□ -0.88
SYNPO2-205ENST00000504178 PLEKHD1A6NEE1 506 aa9.51□□□□□ -0.89
SYNPO2-205ENST00000504178 HAP1P54257 671 aaPredicted RBP9.51□□□□□ -0.89
SYNPO2-205ENST00000504178 GOLGA3Q08378 1498 aa9.51□□□□□ -0.89
SYNPO2-205ENST00000504178 EIF4G2P78344 907 aaKnown RBP eCLIP9.5□□□□□ -0.89
SYNPO2-205ENST00000504178 HIRIP3Q9BW71 556 aaPredicted RBP9.5□□□□□ -0.89
SYNPO2-205ENST00000504178 ARXQ96QS3 562 aa9.5□□□□□ -0.89
SYNPO2-205ENST00000504178 NBR1Q14596 966 aa9.49□□□□□ -0.89
SYNPO2-205ENST00000504178 IRX6P78412 446 aaPredicted RBP9.49□□□□□ -0.89
SYNPO2-205ENST00000504178 EIF5BO60841 1220 aaKnown RBP9.48□□□□□ -0.89
SYNPO2-205ENST00000504178 CDK11BP21127 795 aaKnown RBP9.48□□□□□ -0.89
SYNPO2-205ENST00000504178 BAZ1BQ9UIG0 1483 aaKnown RBP9.48□□□□□ -0.89
SYNPO2-205ENST00000504178 ERCC6Q03468 1493 aa9.47□□□□□ -0.89
SYNPO2-205ENST00000504178 RGL3Q3MIN7 710 aa9.47□□□□□ -0.89
SYNPO2-205ENST00000504178 CFAP53Q96M91 514 aa9.47□□□□□ -0.89
SYNPO2-205ENST00000504178 CEP162Q5TB80 1403 aa9.44□□□□□ -0.9
SYNPO2-205ENST00000504178 PPM1GO15355 546 aaPredicted RBP9.44□□□□□ -0.9
SYNPO2-205ENST00000504178 CFDP1Q9UEE9 299 aaPredicted RBP9.44□□□□□ -0.9
SYNPO2-205ENST00000504178 EEA1Q15075 1411 aa9.43□□□□□ -0.9
SYNPO2-205ENST00000504178 NCLP19338 710 aaKnown RBP9.43□□□□□ -0.9
SYNPO2-205ENST00000504178 CDCA8Q53HL2 280 aa9.43□□□□□ -0.9
SYNPO2-205ENST00000504178 KNSTRNQ9Y448 316 aa9.43□□□□□ -0.9
SYNPO2-205ENST00000504178 BECN1Q14457 450 aa9.42□□□□□ -0.9
SYNPO2-205ENST00000504178 DDRGK1Q96HY6 314 aa9.42□□□□□ -0.9
SYNPO2-205ENST00000504178 MIER1Q8N108 512 aa9.42□□□□□ -0.9
SYNPO2-205ENST00000504178 WRNQ14191 1432 aaPredicted RBP eCLIP9.42□□□□□ -0.9
SYNPO2-205ENST00000504178 CASC1Q6TDU7 716 aa9.41□□□□□ -0.9
SYNPO2-205ENST00000504178 KIF27Q86VH2 1401 aa9.41□□□□□ -0.9
SYNPO2-205ENST00000504178 NACADO15069 1562 aa9.41□□□□□ -0.9
SYNPO2-205ENST00000504178 LAS1LQ9Y4W2 734 aaKnown RBP9.41□□□□□ -0.9
SYNPO2-205ENST00000504178 CARD11Q9BXL7 1154 aa9.4□□□□□ -0.9
SYNPO2-205ENST00000504178 EIF4G1Q04637 1599 aaKnown RBP9.4□□□□□ -0.9
SYNPO2-205ENST00000504178 POGKQ9P215 609 aa9.4□□□□□ -0.91
SYNPO2-205ENST00000504178 MAPK8IP3Q9UPT6 1336 aa9.39□□□□□ -0.91
SYNPO2-205ENST00000504178 FTSJ3Q8IY81 847 aaKnown RBP9.39□□□□□ -0.91
SYNPO2-205ENST00000504178 LMOD2Q6P5Q4 547 aa9.39□□□□□ -0.91
SYNPO2-205ENST00000504178 CEP164Q9UPV0 1460 aa9.38□□□□□ -0.91
SYNPO2-205ENST00000504178 SENP3-EIF4A1A0A087X0R7 540 aa9.37□□□□□ -0.91
SYNPO2-205ENST00000504178 GOLGA6L22H0YM25 854 aa9.37□□□□□ -0.91
SYNPO2-205ENST00000504178 NPHP1O15259 732 aa9.37□□□□□ -0.91
SYNPO2-205ENST00000504178 GLIPR1L2Q4G1C9 344 aa9.37□□□□□ -0.91
SYNPO2-205ENST00000504178 NUDCQ9Y266 331 aa9.36□□□□□ -0.91
SYNPO2-205ENST00000504178 NEUROD2Q15784 382 aa9.35□□□□□ -0.91
SYNPO2-205ENST00000504178 ZRSR1Q15695 479 aaKnown RBP9.35□□□□□ -0.91
SYNPO2-205ENST00000504178 KANK1Q14678 1352 aa9.35□□□□□ -0.91
SYNPO2-205ENST00000504178 TPRNQ4KMQ1 711 aa9.35□□□□□ -0.91
SYNPO2-205ENST00000504178 TULP1O00294 542 aaPredicted RBP9.34□□□□□ -0.91
SYNPO2-205ENST00000504178 CCNB3Q8WWL7 1395 aa9.34□□□□□ -0.91
SYNPO2-205ENST00000504178 TNNT2P45379 298 aaPredicted RBP9.34□□□□□ -0.91
SYNPO2-205ENST00000504178 MYO15BQ96JP2 1530 aa9.34□□□□□ -0.92
SYNPO2-205ENST00000504178 CC2D1BQ5T0F9 858 aaKnown RBP9.33□□□□□ -0.92
SYNPO2-205ENST00000504178 TRIM44Q96DX7 344 aaPredicted RBP9.32□□□□□ -0.92
SYNPO2-205ENST00000504178 TNIKQ9UKE5 1360 aa9.32□□□□□ -0.92
SYNPO2-205ENST00000504178 OS9Q13438 667 aaPredicted RBP9.32□□□□□ -0.92
SYNPO2-205ENST00000504178 TRHP20396 242 aaPredicted RBP9.31□□□□□ -0.92
SYNPO2-205ENST00000504178 ANP32EQ9BTT0 268 aa9.31□□□□□ -0.92
SYNPO2-205ENST00000504178 PNNQ9H307 717 aaKnown RBP9.31□□□□□ -0.92
SYNPO2-205ENST00000504178 U2SURPO15042 1029 aaKnown RBP9.3□□□□□ -0.92
SYNPO2-205ENST00000504178 TAOK2Q9UL54 1235 aa9.3□□□□□ -0.92
SYNPO2-205ENST00000504178 PTMAP06454 111 aaKnown RBP9.3□□□□□ -0.92
SYNPO2-205ENST00000504178 FRAT1Q92837 279 aaPredicted RBP9.3□□□□□ -0.92
SYNPO2-205ENST00000504178 MLECQ14165 292 aa9.3□□□□□ -0.92
SYNPO2-205ENST00000504178 HDGFP51858 240 aaKnown RBP9.28□□□□□ -0.92
SYNPO2-205ENST00000504178 CHMP4BQ9H444 224 aaKnown RBP9.28□□□□□ -0.92
SYNPO2-205ENST00000504178 BAZ1AQ9NRL2 1556 aaPredicted RBP9.28□□□□□ -0.92
SYNPO2-205ENST00000504178 SUPT16HQ9Y5B9 1047 aaKnown RBP9.28□□□□□ -0.92
SYNPO2-205ENST00000504178 SIN3AQ96ST3 1273 aa9.28□□□□□ -0.92
SYNPO2-205ENST00000504178 FHAD1B1AJZ9 1412 aa9.28□□□□□ -0.92
SYNPO2-205ENST00000504178 TMF1P82094 1093 aa9.28□□□□□ -0.92
SYNPO2-205ENST00000504178 GOLGA2Q08379 1002 aa9.27□□□□□ -0.92
SYNPO2-205ENST00000504178 MS4A1P11836 297 aa9.26□□□□□ -0.93
SYNPO2-205ENST00000504178 CUX2O14529 1486 aa9.26□□□□□ -0.93
SYNPO2-205ENST00000504178 SRPK2P78362 688 aaKnown RBP9.26□□□□□ -0.93
SYNPO2-205ENST00000504178 DCAF11Q8TEB1 546 aa9.26□□□□□ -0.93
SYNPO2-205ENST00000504178 SOX12O15370 315 aa9.26□□□□□ -0.93
SYNPO2-205ENST00000504178 NAP1L2Q9ULW6 460 aaPredicted RBP9.26□□□□□ -0.93
SYNPO2-205ENST00000504178 RGS3P49796 1198 aa9.25□□□□□ -0.93
SYNPO2-205ENST00000504178 HSP90AB1P08238 724 aaKnown RBP9.25□□□□□ -0.93
SYNPO2-205ENST00000504178 FGD1P98174 961 aa9.25□□□□□ -0.93
SYNPO2-205ENST00000504178 KCNJ4P48050 445 aa9.24□□□□□ -0.93
SYNPO2-205ENST00000504178 CARMIL1Q5VZK9 1371 aa9.24□□□□□ -0.93
SYNPO2-205ENST00000504178 SAFB2Q14151 953 aaKnown RBP eCLIP9.23□□□□□ -0.93
SYNPO2-205ENST00000504178 DNTTIP2Q5QJE6 756 aaKnown RBP9.23□□□□□ -0.93
SYNPO2-205ENST00000504178 ARHGAP35Q9NRY4 1499 aa9.23□□□□□ -0.93
SYNPO2-205ENST00000504178 GOLGA6L6A8MZA4 724 aa9.23□□□□□ -0.93
SYNPO2-205ENST00000504178 MORC1Q86VD1 984 aa9.23□□□□□ -0.93
SYNPO2-205ENST00000504178 PPP4R2Q9NY27 417 aa9.22□□□□□ -0.93
SYNPO2-205ENST00000504178 RTF1Q92541 710 aaKnown RBP9.21□□□□□ -0.94
SYNPO2-205ENST00000504178 PLCB2Q00722 1185 aa9.2□□□□□ -0.94
SYNPO2-205ENST00000504178 STK26Q9P289 416 aa9.2□□□□□ -0.94
SYNPO2-205ENST00000504178 HDGFL2Q7Z4V5 671 aaPredicted RBP9.2□□□□□ -0.94
SYNPO2-205ENST00000504178 GGT6Q6P531 493 aa9.2□□□□□ -0.94
SYNPO2-205ENST00000504178 CARMIL2Q6F5E8 1435 aa9.19□□□□□ -0.94
SYNPO2-205ENST00000504178 MCCP23508 829 aa9.19□□□□□ -0.94
SYNPO2-205ENST00000504178 PAK3O75914 559 aaPredicted RBP9.18□□□□□ -0.94
SYNPO2-205ENST00000504178 HSCBQ8IWL3 235 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms