RNA–Protein interactions for RNA: ENST00000503427.5

HMGXB3-202, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,275 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-202ENST00000503427 BCL11AQ9H165 835 aa21.77■■□□□ 1.08
HMGXB3-202ENST00000503427 RRP7BPQ9NSQ0 103 aa21.76■■□□□ 1.07
HMGXB3-202ENST00000503427 CCDC88BA6NC98 1476 aa21.75■■□□□ 1.07
HMGXB3-202ENST00000503427 TMC1Q8TDI8 760 aa21.74■■□□□ 1.07
HMGXB3-202ENST00000503427 SLC24A1O60721 1099 aa21.73■■□□□ 1.07
HMGXB3-202ENST00000503427 CCDC136Q96JN2 1154 aa21.72■■□□□ 1.07
HMGXB3-202ENST00000503427 KCNH8Q96L42 1107 aa21.72■■□□□ 1.07
HMGXB3-202ENST00000503427 CARMIL1Q5VZK9 1371 aa21.71■■□□□ 1.07
HMGXB3-202ENST00000503427 CUX2O14529 1486 aa21.71■■□□□ 1.07
HMGXB3-202ENST00000503427 CFDP1Q9UEE9 299 aaPredicted RBP21.7■■□□□ 1.06
HMGXB3-202ENST00000503427 MRS2Q9HD23 443 aa21.7■■□□□ 1.06
HMGXB3-202ENST00000503427 UPF2Q9HAU5 1272 aaKnown RBP21.7■■□□□ 1.06
HMGXB3-202ENST00000503427 FHAD1B1AJZ9 1412 aa21.7■■□□□ 1.06
HMGXB3-202ENST00000503427 KDM2AQ9Y2K7 1162 aa21.69■■□□□ 1.06
HMGXB3-202ENST00000503427 SOGA1O94964 1423 aa21.66■■□□□ 1.06
HMGXB3-202ENST00000503427 EIF4G2P78344 907 aaKnown RBP eCLIP21.65■■□□□ 1.065e-6■■□□□ 14.3
HMGXB3-202ENST00000503427 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.64■■□□□ 1.06
HMGXB3-202ENST00000503427 TRHP20396 242 aaPredicted RBP21.63■■□□□ 1.05
HMGXB3-202ENST00000503427 SALL2Q9Y467 1007 aaPredicted RBP21.63■■□□□ 1.05
HMGXB3-202ENST00000503427 ANP32BQ92688 251 aaKnown RBP21.61■■□□□ 1.05
HMGXB3-202ENST00000503427 TOP2AP11388 1531 aaKnown RBP21.61■■□□□ 1.05
HMGXB3-202ENST00000503427 PDS5BQ9NTI5 1447 aa21.6■■□□□ 1.05
HMGXB3-202ENST00000503427 HSP90AA1P07900 732 aaKnown RBP21.6■■□□□ 1.05
HMGXB3-202ENST00000503427 WDR43Q15061 677 aaKnown RBP eCLIP21.56■■□□□ 1.04
HMGXB3-202ENST00000503427 HIRIP3Q9BW71 556 aaPredicted RBP21.55■■□□□ 1.04
HMGXB3-202ENST00000503427 ABCC8Q09428 1581 aa21.53■■□□□ 1.04
HMGXB3-202ENST00000503427 CCNB3Q8WWL7 1395 aa21.5■■□□□ 1.03
HMGXB3-202ENST00000503427 EIF4G1Q04637 1599 aaKnown RBP21.5■■□□□ 1.03
HMGXB3-202ENST00000503427 WIZO95785 1651 aa21.5■■□□□ 1.03
HMGXB3-202ENST00000503427 NBR1Q14596 966 aa21.49■■□□□ 1.03
HMGXB3-202ENST00000503427 IRX6P78412 446 aaPredicted RBP21.49■■□□□ 1.03
HMGXB3-202ENST00000503427 EIF5BO60841 1220 aaKnown RBP21.48■■□□□ 1.03
HMGXB3-202ENST00000503427 VPS8Q8N3P4 1428 aa21.48■■□□□ 1.03
HMGXB3-202ENST00000503427 CADPSQ9ULU8 1353 aa21.44■■□□□ 1.02
HMGXB3-202ENST00000503427 RGL3Q3MIN7 710 aa21.43■■□□□ 1.02
HMGXB3-202ENST00000503427 PPP1R15AO75807 674 aaPredicted RBP21.42■■□□□ 1.02
HMGXB3-202ENST00000503427 ATAD2BQ9ULI0 1458 aa21.42■■□□□ 1.02
HMGXB3-202ENST00000503427 CDCA8Q53HL2 280 aa21.41■■□□□ 1.02
HMGXB3-202ENST00000503427 SMARCA4P51532 1647 aa21.38■■□□□ 1.01
HMGXB3-202ENST00000503427 CARMIL2Q6F5E8 1435 aa21.38■■□□□ 1.01
HMGXB3-202ENST00000503427 TDRD9Q8NDG6 1382 aaKnown RBP21.35■■□□□ 1.01
HMGXB3-202ENST00000503427 FMN1Q68DA7 1419 aa21.34■■□□□ 1.01
HMGXB3-202ENST00000503427 ARID4BQ4LE39 1312 aaPredicted RBP21.34■■□□□ 1.01
HMGXB3-202ENST00000503427 CARD11Q9BXL7 1154 aa21.34■■□□□ 1.01
HMGXB3-202ENST00000503427 TIMELESSQ9UNS1 1208 aa21.33■■□□□ 1.01
HMGXB3-202ENST00000503427 ARHGAP35Q9NRY4 1499 aa21.33■■□□□ 1
HMGXB3-202ENST00000503427 DDRGK1Q96HY6 314 aa21.32■■□□□ 1
HMGXB3-202ENST00000503427 SIN3AQ96ST3 1273 aa21.29■■□□□ 1
HMGXB3-202ENST00000503427 SUPT16HQ9Y5B9 1047 aaKnown RBP21.28■■□□□ 1
HMGXB3-202ENST00000503427 GLIPR1L2Q4G1C9 344 aa21.26■□□□□ 0.99
HMGXB3-202ENST00000503427 RAPGEF2Q9Y4G8 1499 aa21.25■□□□□ 0.99
HMGXB3-202ENST00000503427 SETD5Q9C0A6 1442 aa21.25■□□□□ 0.99
HMGXB3-202ENST00000503427 KNSTRNQ9Y448 316 aa21.25■□□□□ 0.99
HMGXB3-202ENST00000503427 ANP32EQ9BTT0 268 aa21.25■□□□□ 0.99
HMGXB3-202ENST00000503427 BECN1Q14457 450 aa21.24■□□□□ 0.99
HMGXB3-202ENST00000503427 MYH16Q9H6N6 1097 aa21.24■□□□□ 0.99
HMGXB3-202ENST00000503427 KANK1Q14678 1352 aa21.23■□□□□ 0.99
HMGXB3-202ENST00000503427 CFAP53Q96M91 514 aa21.22■□□□□ 0.99
HMGXB3-202ENST00000503427 KANK4Q5T7N3 995 aaPredicted RBP21.22■□□□□ 0.99
HMGXB3-202ENST00000503427 PPP4R2Q9NY27 417 aa21.19■□□□□ 0.98
HMGXB3-202ENST00000503427 ARXQ96QS3 562 aa21.18■□□□□ 0.98
HMGXB3-202ENST00000503427 SENP3Q9H4L4 574 aaPredicted RBP21.16■□□□□ 0.98
HMGXB3-202ENST00000503427 C14orf37Q86TY3 774 aa21.13■□□□□ 0.97
HMGXB3-202ENST00000503427 FANCD2Q9BXW9 1451 aa21.12■□□□□ 0.97
HMGXB3-202ENST00000503427 DCAF11Q8TEB1 546 aa21.11■□□□□ 0.97
HMGXB3-202ENST00000503427 POGKQ9P215 609 aa21.1■□□□□ 0.97
HMGXB3-202ENST00000503427 PPM1GO15355 546 aaPredicted RBP21.1■□□□□ 0.97
HMGXB3-202ENST00000503427 EFCAB2Q5VUJ9 269 aa21.1■□□□□ 0.97
HMGXB3-202ENST00000503427 TMF1P82094 1093 aa21.06■□□□□ 0.96
HMGXB3-202ENST00000503427 FHOD3Q2V2M9 1422 aa21.06■□□□□ 0.96
HMGXB3-202ENST00000503427 CCER2I3L3R5 266 aa21.06■□□□□ 0.96
HMGXB3-202ENST00000503427 ANKRD30AQ9BXX3 1397 aa21.06■□□□□ 0.96
HMGXB3-202ENST00000503427 PKD2Q13563 968 aa21.05■□□□□ 0.96
HMGXB3-202ENST00000503427 GOLGA6L22H0YM25 854 aa21.04■□□□□ 0.96
HMGXB3-202ENST00000503427 HDGFP51858 240 aaKnown RBP21.04■□□□□ 0.96
HMGXB3-202ENST00000503427 RAB3GAP2Q9H2M9 1393 aa21.03■□□□□ 0.96
HMGXB3-202ENST00000503427 SENP3-EIF4A1A0A087X0R7 540 aa21.03■□□□□ 0.96
HMGXB3-202ENST00000503427 NUDCQ9Y266 331 aa21.03■□□□□ 0.96
HMGXB3-202ENST00000503427 CCDC18Q5T9S5 1454 aa21.02■□□□□ 0.95
HMGXB3-202ENST00000503427 ZBTB7CA1YPR0 619 aa21.01■□□□□ 0.95
HMGXB3-202ENST00000503427 TRIM44Q96DX7 344 aaPredicted RBP21.01■□□□□ 0.95
HMGXB3-202ENST00000503427 RSPH4AQ5TD94 716 aa21■□□□□ 0.95
HMGXB3-202ENST00000503427 JPH4Q96JJ6 628 aa21■□□□□ 0.95
HMGXB3-202ENST00000503427 MPHOSPH9Q99550 1183 aa20.98■□□□□ 0.95
HMGXB3-202ENST00000503427 NCLP19338 710 aaKnown RBP20.98■□□□□ 0.95
HMGXB3-202ENST00000503427 NOP58Q9Y2X3 529 aaKnown RBP20.98■□□□□ 0.95
HMGXB3-202ENST00000503427 FTSJ3Q8IY81 847 aaKnown RBP20.98■□□□□ 0.95
HMGXB3-202ENST00000503427 MAPK8IP3Q9UPT6 1336 aa20.97■□□□□ 0.95
HMGXB3-202ENST00000503427 NUP155O75694 1391 aa20.97■□□□□ 0.95
HMGXB3-202ENST00000503427 NCAPD3P42695 1498 aa20.96■□□□□ 0.95
HMGXB3-202ENST00000503427 GGT6Q6P531 493 aa20.95■□□□□ 0.94
HMGXB3-202ENST00000503427 RUSC2Q8N2Y8 1516 aa20.94■□□□□ 0.94
HMGXB3-202ENST00000503427 B4GALNT3Q6L9W6 998 aa20.93■□□□□ 0.94
HMGXB3-202ENST00000503427 HSPA5P11021 654 aaKnown RBP20.92■□□□□ 0.94
HMGXB3-202ENST00000503427 CC2D1BQ5T0F9 858 aaKnown RBP20.91■□□□□ 0.94
HMGXB3-202ENST00000503427 PLEKHG5O94827 1062 aa20.91■□□□□ 0.94
HMGXB3-202ENST00000503427 NEUROD2Q15784 382 aa20.9■□□□□ 0.94
HMGXB3-202ENST00000503427 RGS3P49796 1198 aa20.9■□□□□ 0.94
HMGXB3-202ENST00000503427 HAP1P54257 671 aaPredicted RBP20.9■□□□□ 0.94
HMGXB3-202ENST00000503427 MLECQ14165 292 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms