RNA–Protein interactions for RNA: ENST00000501122.2

NEAT1-202, nuclear paraspeckle assembly transcript 1, humanhuman

BASIC

Gene NEAT1, Length 22,743 nt, Biotype lincRNA, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEAT1-202ENST00000501122 HMGB1P09429 215 aaKnown RBP6.38□□□□□ -1.39
NEAT1-202ENST00000501122 PATL2C9JE40 543 aaKnown RBP6.37□□□□□ -1.39
NEAT1-202ENST00000501122 ARID4BQ4LE39 1312 aaPredicted RBP6.37□□□□□ -1.39
NEAT1-202ENST00000501122 HNRNPUL2Q1KMD3 747 aaKnown RBP6.35□□□□□ -1.39
NEAT1-202ENST00000501122 UPF2Q9HAU5 1272 aaKnown RBP6.35□□□□□ -1.39
NEAT1-202ENST00000501122 ZMYND15Q9H091 742 aa6.35□□□□□ -1.39
NEAT1-202ENST00000501122 NCBP3Q53F19 620 aaKnown RBP6.34□□□□□ -1.39
NEAT1-202ENST00000501122 LAS1LQ9Y4W2 734 aaKnown RBP6.34□□□□□ -1.39
NEAT1-202ENST00000501122 TRIM41Q8WV44 630 aa6.34□□□□□ -1.39
NEAT1-202ENST00000501122 SUPT16HQ9Y5B9 1047 aaKnown RBP6.33□□□□□ -1.4
NEAT1-202ENST00000501122 PTMAP06454 111 aaKnown RBP6.33□□□□□ -1.4
NEAT1-202ENST00000501122 BECN1Q14457 450 aa6.33□□□□□ -1.4
NEAT1-202ENST00000501122 USP35Q9P2H5 1018 aa6.31□□□□□ -1.4
NEAT1-202ENST00000501122 HSP90B1P14625 803 aaKnown RBP6.3□□□□□ -1.4
NEAT1-202ENST00000501122 ZNF526Q8TF50 670 aaPredicted RBP6.29□□□□□ -1.4
NEAT1-202ENST00000501122 MSNP26038 577 aaKnown RBP6.29□□□□□ -1.4
NEAT1-202ENST00000501122 CHAF1AQ13111 956 aaPredicted RBP6.28□□□□□ -1.4
NEAT1-202ENST00000501122 ARID3AQ99856 593 aa6.28□□□□□ -1.4
NEAT1-202ENST00000501122 IRX6P78412 446 aaPredicted RBP6.28□□□□□ -1.4
NEAT1-202ENST00000501122 RRP9O43818 475 aaKnown RBP6.28□□□□□ -1.4
NEAT1-202ENST00000501122 RBM10P98175 930 aaKnown RBP6.28□□□□□ -1.4
NEAT1-202ENST00000501122 MAP7D2Q96T17 732 aa6.27□□□□□ -1.4
NEAT1-202ENST00000501122 GOLGA6L3A6NEY3 463 aa6.27□□□□□ -1.41
NEAT1-202ENST00000501122 BBXQ8WY36 941 aaPredicted RBP6.27□□□□□ -1.41
NEAT1-202ENST00000501122 PAXIP1Q6ZW49 1069 aaPredicted RBP6.27□□□□□ -1.41
NEAT1-202ENST00000501122 GOLGA6L6A8MZA4 724 aa6.27□□□□□ -1.41
NEAT1-202ENST00000501122 UBTFP17480 764 aaKnown RBP6.27□□□□□ -1.41
NEAT1-202ENST00000501122 GOLGA6L22H0YM25 854 aa6.26□□□□□ -1.41
NEAT1-202ENST00000501122 MSH5O43196 834 aa6.26□□□□□ -1.41
NEAT1-202ENST00000501122 TAF3Q5VWG9 929 aa6.26□□□□□ -1.41
NEAT1-202ENST00000501122 STK11IPQ8N1F8 1099 aa6.26□□□□□ -1.41
NEAT1-202ENST00000501122 GOLGA6L1Q8N7Z2 621 aa6.25□□□□□ -1.41
NEAT1-202ENST00000501122 BCL11BQ9C0K0 894 aaPredicted RBP6.25□□□□□ -1.41
NEAT1-202ENST00000501122 ZNF771Q7L3S4 317 aaPredicted RBP6.25□□□□□ -1.41
NEAT1-202ENST00000501122 MTERF4Q7Z6M4 381 aaKnown RBP6.24□□□□□ -1.41
NEAT1-202ENST00000501122 CCDC9Q9Y3X0 531 aaKnown RBP6.24□□□□□ -1.41
NEAT1-202ENST00000501122 PPP4R2Q9NY27 417 aa6.24□□□□□ -1.41
NEAT1-202ENST00000501122 BRD2P25440 801 aaKnown RBP6.24□□□□□ -1.41
NEAT1-202ENST00000501122 FAM13BQ9NYF5 915 aa6.23□□□□□ -1.41
NEAT1-202ENST00000501122 SETQ01105 290 aaPredicted RBP6.22□□□□□ -1.41
NEAT1-202ENST00000501122 SLC4A1APQ9BWU0 796 aaKnown RBP6.22□□□□□ -1.41
NEAT1-202ENST00000501122 HNRNPUQ00839 825 aaKnown RBP eCLIP6.21□□□□□ -1.427e-31■□□□□ 9.9
NEAT1-202ENST00000501122 IPO9Q96P70 1041 aaKnown RBP6.21□□□□□ -1.42
NEAT1-202ENST00000501122 GSE1Q14687 1217 aa6.2□□□□□ -1.42
NEAT1-202ENST00000501122 TPRNQ4KMQ1 711 aa6.2□□□□□ -1.42
NEAT1-202ENST00000501122 NAP1L2Q9ULW6 460 aaPredicted RBP6.19□□□□□ -1.42
NEAT1-202ENST00000501122 KCNH8Q96L42 1107 aa6.19□□□□□ -1.42
NEAT1-202ENST00000501122 TRIM52Q96A61 297 aa6.19□□□□□ -1.42
NEAT1-202ENST00000501122 FGD1P98174 961 aa6.19□□□□□ -1.42
NEAT1-202ENST00000501122 ZBTB7CA1YPR0 619 aa6.18□□□□□ -1.42
NEAT1-202ENST00000501122 TPM2P07951 284 aa6.18□□□□□ -1.42
NEAT1-202ENST00000501122 KIAA2012Q0VF49 1180 aa6.18□□□□□ -1.42
NEAT1-202ENST00000501122 FANCIQ9NVI1 1328 aa6.18□□□□□ -1.42
NEAT1-202ENST00000501122 KLHL34Q8N239 644 aa6.17□□□□□ -1.42
NEAT1-202ENST00000501122 IL27Q8NEV9 243 aa6.17□□□□□ -1.42
NEAT1-202ENST00000501122 IRX3P78415 501 aaPredicted RBP6.17□□□□□ -1.42
NEAT1-202ENST00000501122 DHX37Q8IY37 1157 aaKnown RBP6.17□□□□□ -1.42
NEAT1-202ENST00000501122 OS9Q13438 667 aaPredicted RBP6.17□□□□□ -1.42
NEAT1-202ENST00000501122 MYH16Q9H6N6 1097 aa6.17□□□□□ -1.42
NEAT1-202ENST00000501122 CC2D1BQ5T0F9 858 aaKnown RBP6.17□□□□□ -1.42
NEAT1-202ENST00000501122 NOM1Q5C9Z4 860 aaKnown RBP6.17□□□□□ -1.42
NEAT1-202ENST00000501122 FAM43AQ8N2R8 423 aa6.17□□□□□ -1.42
NEAT1-202ENST00000501122 SENP3-EIF4A1A0A087X0R7 540 aa6.16□□□□□ -1.42
NEAT1-202ENST00000501122 NEFHP12036 1026 aa6.16□□□□□ -1.42
NEAT1-202ENST00000501122 CLGNO14967 610 aa6.16□□□□□ -1.42
NEAT1-202ENST00000501122 CHMP4AQ9BY43 222 aa6.15□□□□□ -1.42
NEAT1-202ENST00000501122 WWC1Q8IX03 1113 aa6.15□□□□□ -1.42
NEAT1-202ENST00000501122 CCDC66A2RUB6 948 aa6.15□□□□□ -1.43
NEAT1-202ENST00000501122 GZF1Q9H116 711 aaPredicted RBP6.14□□□□□ -1.43
NEAT1-202ENST00000501122 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.14□□□□□ -1.43
NEAT1-202ENST00000501122 PLCD4Q9BRC7 762 aa6.14□□□□□ -1.43
NEAT1-202ENST00000501122 MEX3CQ5U5Q3 659 aaKnown RBP6.13□□□□□ -1.43
NEAT1-202ENST00000501122 KAT6BQ8WYB5 2073 aa6.13□□□□□ -1.43
NEAT1-202ENST00000501122 TEX35Q5T0J7 233 aa6.13□□□□□ -1.43
NEAT1-202ENST00000501122 FTSJ3Q8IY81 847 aaKnown RBP6.13□□□□□ -1.43
NEAT1-202ENST00000501122 DDX10Q13206 875 aaKnown RBP6.12□□□□□ -1.43
NEAT1-202ENST00000501122 BCCIPQ9P287 314 aaKnown RBP eCLIP6.12□□□□□ -1.431e-15■■□□□ 13.7
NEAT1-202ENST00000501122 PLCD3Q8N3E9 789 aa6.12□□□□□ -1.43
NEAT1-202ENST00000501122 GPS2Q13227 327 aa6.12□□□□□ -1.43
NEAT1-202ENST00000501122 PLPPR3Q6T4P5 718 aa6.12□□□□□ -1.43
NEAT1-202ENST00000501122 SSR1P43307 286 aaKnown RBP6.12□□□□□ -1.43
NEAT1-202ENST00000501122 PDCL3Q9H2J4 239 aa6.12□□□□□ -1.43
NEAT1-202ENST00000501122 AXDND1Q5T1B0 1012 aaPredicted RBP6.11□□□□□ -1.43
NEAT1-202ENST00000501122 MAPK8IP2Q13387 824 aaPredicted RBP6.11□□□□□ -1.43
NEAT1-202ENST00000501122 B4GALNT3Q6L9W6 998 aa6.11□□□□□ -1.43
NEAT1-202ENST00000501122 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.11□□□□□ -1.43
NEAT1-202ENST00000501122 PSMD1Q99460 953 aa6.11□□□□□ -1.43
NEAT1-202ENST00000501122 DEF6Q9H4E7 631 aa6.1□□□□□ -1.43
NEAT1-202ENST00000501122 PLCB2Q00722 1185 aa6.1□□□□□ -1.43
NEAT1-202ENST00000501122 CSPP1Q1MSJ5 1256 aa6.1□□□□□ -1.43
NEAT1-202ENST00000501122 NRDCO43847 1150 aa6.1□□□□□ -1.43
NEAT1-202ENST00000501122 TSPYL1Q9H0U9 437 aa6.1□□□□□ -1.43
NEAT1-202ENST00000501122 BRPF3Q9ULD4 1205 aa6.1□□□□□ -1.43
NEAT1-202ENST00000501122 E9PSI1 815 aa6.09□□□□□ -1.43
NEAT1-202ENST00000501122 FAM9BQ8IZU0 186 aa6.09□□□□□ -1.43
NEAT1-202ENST00000501122 AEBP1Q8IUX7 1158 aa6.09□□□□□ -1.43
NEAT1-202ENST00000501122 TCERG1O14776 1098 aaKnown RBP6.09□□□□□ -1.43
NEAT1-202ENST00000501122 FAM193AP78312 1265 aa6.09□□□□□ -1.43
NEAT1-202ENST00000501122 CWC15Q9P013 229 aaKnown RBP6.09□□□□□ -1.43
NEAT1-202ENST00000501122 CHMP4BQ9H444 224 aaKnown RBP6.09□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms