RNA–Protein interactions for RNA: ENST00000497993.5

TMEM39A-212, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 590 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-212ENST00000497993 FARP1Q9Y4F1 1045 aaPredicted RBP11.46□□□□□ -0.57
TMEM39A-212ENST00000497993 SCRIBQ14160 1630 aa11.41□□□□□ -0.58
TMEM39A-212ENST00000497993 DCAF8L2P0C7V8 631 aa11.4□□□□□ -0.58
TMEM39A-212ENST00000497993 NUBP1P53384 320 aa11.38□□□□□ -0.59
TMEM39A-212ENST00000497993 GSE1Q14687 1217 aa11.31□□□□□ -0.6
TMEM39A-212ENST00000497993 FAM212AQ96EL1 285 aa11.3□□□□□ -0.6
TMEM39A-212ENST00000497993 RASEFQ8IZ41 740 aa11.29□□□□□ -0.6
TMEM39A-212ENST00000497993 DCAF8Q5TAQ9 597 aa11.28□□□□□ -0.6
TMEM39A-212ENST00000497993 POTEHQ6S545 545 aa11.27□□□□□ -0.61
TMEM39A-212ENST00000497993 PAK3O75914 559 aaPredicted RBP11.26□□□□□ -0.61
TMEM39A-212ENST00000497993 CIZ1Q9ULV3 898 aaPredicted RBP11.26□□□□□ -0.61
TMEM39A-212ENST00000497993 TRIM41Q8WV44 630 aa11.24□□□□□ -0.61
TMEM39A-212ENST00000497993 EIF4G1Q04637 1599 aaKnown RBP11.24□□□□□ -0.61
TMEM39A-212ENST00000497993 PKD2Q13563 968 aa11.23□□□□□ -0.61
TMEM39A-212ENST00000497993 C19orf67A6NJJ6 358 aa11.22□□□□□ -0.61
TMEM39A-212ENST00000497993 CD44P16070 742 aaKnown RBP11.21□□□□□ -0.61
TMEM39A-212ENST00000497993 TSPYL2Q9H2G4 693 aaPredicted RBP11.21□□□□□ -0.61
TMEM39A-212ENST00000497993 CC2D2AQ9P2K1 1620 aa11.19□□□□□ -0.62
TMEM39A-212ENST00000497993 HAX1O00165 279 aa11.17□□□□□ -0.62
TMEM39A-212ENST00000497993 BCANQ96GW7 911 aa11.17□□□□□ -0.62
TMEM39A-212ENST00000497993 ECM2O94769 699 aaPredicted RBP11.16□□□□□ -0.62
TMEM39A-212ENST00000497993 CHRM1P11229 460 aaPredicted RBP11.16□□□□□ -0.62
TMEM39A-212ENST00000497993 PLCB2Q00722 1185 aa11.16□□□□□ -0.62
TMEM39A-212ENST00000497993 ZRANB1Q9UGI0 708 aa11.16□□□□□ -0.62
TMEM39A-212ENST00000497993 CCDC61Q9Y6R9 512 aa11.16□□□□□ -0.62
TMEM39A-212ENST00000497993 PYGBP11216 843 aa11.09□□□□□ -0.63
TMEM39A-212ENST00000497993 ZNF579Q8NAF0 562 aaKnown RBP11.09□□□□□ -0.63
TMEM39A-212ENST00000497993 SGIP1Q9BQI5 828 aa11.06□□□□□ -0.64
TMEM39A-212ENST00000497993 CLCN6P51797 869 aa11.05□□□□□ -0.64
TMEM39A-212ENST00000497993 KIF12Q96FN5 646 aa11.05□□□□□ -0.64
TMEM39A-212ENST00000497993 PRKCSHP14314 528 aaPredicted RBP11.04□□□□□ -0.64
TMEM39A-212ENST00000497993 EVX2Q03828 476 aa11.04□□□□□ -0.64
TMEM39A-212ENST00000497993 TAOK2Q9UL54 1235 aa11.04□□□□□ -0.64
TMEM39A-212ENST00000497993 CECR2Q9BXF3 1484 aa11.04□□□□□ -0.64
TMEM39A-212ENST00000497993 RGL2O15211 777 aa11.03□□□□□ -0.64
TMEM39A-212ENST00000497993 PHF12Q96QT6 1004 aa11.02□□□□□ -0.65
TMEM39A-212ENST00000497993 SMARCA4P51532 1647 aa11.02□□□□□ -0.65
TMEM39A-212ENST00000497993 HAP1P54257 671 aaPredicted RBP11.01□□□□□ -0.65
TMEM39A-212ENST00000497993 ZNF467Q7Z7K2 595 aaPredicted RBP11.01□□□□□ -0.65
TMEM39A-212ENST00000497993 PEG3Q9GZU2 1588 aa11.01□□□□□ -0.65
TMEM39A-212ENST00000497993 RIOK3O14730 519 aaKnown RBP11□□□□□ -0.65
TMEM39A-212ENST00000497993 MAP3K13O43283 966 aa11□□□□□ -0.65
TMEM39A-212ENST00000497993 PCDHB13Q9Y5F0 798 aa10.99□□□□□ -0.65
TMEM39A-212ENST00000497993 BAZ1AQ9NRL2 1556 aaPredicted RBP10.99□□□□□ -0.65
TMEM39A-212ENST00000497993 RNF25Q96BH1 459 aaPredicted RBP10.98□□□□□ -0.65
TMEM39A-212ENST00000497993 HMGXB3Q12766 1538 aa10.97□□□□□ -0.65
TMEM39A-212ENST00000497993 SMARCA2P51531 1590 aa10.95□□□□□ -0.66
TMEM39A-212ENST00000497993 NCAPD3P42695 1498 aa10.95□□□□□ -0.66
TMEM39A-212ENST00000497993 VGFO15240 615 aaPredicted RBP10.95□□□□□ -0.66
TMEM39A-212ENST00000497993 IFNL1Q8IU54 200 aa10.94□□□□□ -0.66
TMEM39A-212ENST00000497993 PCDHB8Q9UN66 801 aa10.93□□□□□ -0.66
TMEM39A-212ENST00000497993 MS4A3Q96HJ5 214 aa10.91□□□□□ -0.66
TMEM39A-212ENST00000497993 ATAD2BQ9ULI0 1458 aa10.91□□□□□ -0.66
TMEM39A-212ENST00000497993 PDAP1Q13442 181 aaKnown RBP10.9□□□□□ -0.66
TMEM39A-212ENST00000497993 VSIG10Q8N0Z9 540 aa10.9□□□□□ -0.66
TMEM39A-212ENST00000497993 GABBR2O75899 941 aa10.88□□□□□ -0.67
TMEM39A-212ENST00000497993 SP7Q8TDD2 431 aaPredicted RBP10.88□□□□□ -0.67
TMEM39A-212ENST00000497993 GALR2O43603 387 aaPredicted RBP10.86□□□□□ -0.67
TMEM39A-212ENST00000497993 PSEN1P49768 467 aa10.86□□□□□ -0.67
TMEM39A-212ENST00000497993 DAXXQ9UER7 740 aaPredicted RBP10.85□□□□□ -0.67
TMEM39A-212ENST00000497993 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.84□□□□□ -0.67
TMEM39A-212ENST00000497993 TPRNQ4KMQ1 711 aa10.84□□□□□ -0.67
TMEM39A-212ENST00000497993 HS6ST3Q8IZP7 471 aa10.84□□□□□ -0.67
TMEM39A-212ENST00000497993 ZFP91Q96JP5 570 aaPredicted RBP10.84□□□□□ -0.67
TMEM39A-212ENST00000497993 MROH2BQ7Z745 1585 aa10.84□□□□□ -0.67
TMEM39A-212ENST00000497993 CHGAP10645 457 aaKnown RBP10.83□□□□□ -0.68
TMEM39A-212ENST00000497993 TIE1P35590 1138 aa10.83□□□□□ -0.68
TMEM39A-212ENST00000497993 STK25O00506 426 aa10.82□□□□□ -0.68
TMEM39A-212ENST00000497993 BCL11BQ9C0K0 894 aaPredicted RBP10.79□□□□□ -0.68
TMEM39A-212ENST00000497993 TRPC6Q9Y210 931 aa10.79□□□□□ -0.68
TMEM39A-212ENST00000497993 TMEM106CQ9BVX2 250 aa10.78□□□□□ -0.68
TMEM39A-212ENST00000497993 DNAJC5Q9H3Z4 198 aa10.78□□□□□ -0.68
TMEM39A-212ENST00000497993 STK24Q9Y6E0 443 aa10.78□□□□□ -0.68
TMEM39A-212ENST00000497993 BAZ1BQ9UIG0 1483 aaKnown RBP10.78□□□□□ -0.68
TMEM39A-212ENST00000497993 BBXQ8WY36 941 aaPredicted RBP10.76□□□□□ -0.69
TMEM39A-212ENST00000497993 TTLL13PA6NNM8 815 aa10.75□□□□□ -0.69
TMEM39A-212ENST00000497993 BMP2KQ9NSY1 1161 aaPredicted RBP10.75□□□□□ -0.69
TMEM39A-212ENST00000497993 WIZO95785 1651 aa10.74□□□□□ -0.69
TMEM39A-212ENST00000497993 DCBLD2Q96PD2 775 aa10.74□□□□□ -0.69
TMEM39A-212ENST00000497993 ASTLQ6HA08 431 aaPredicted RBP10.73□□□□□ -0.69
TMEM39A-212ENST00000497993 ARXQ96QS3 562 aa10.73□□□□□ -0.69
TMEM39A-212ENST00000497993 LAMC3Q9Y6N6 1575 aa10.72□□□□□ -0.69
TMEM39A-212ENST00000497993 ATMINO43313 823 aaPredicted RBP10.71□□□□□ -0.69
TMEM39A-212ENST00000497993 GOLGA2Q08379 1002 aa10.7□□□□□ -0.7
TMEM39A-212ENST00000497993 CABP2Q9NPB3 220 aa10.7□□□□□ -0.7
TMEM39A-212ENST00000497993 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.7□□□□□ -0.7
TMEM39A-212ENST00000497993 ATN1P54259 1190 aaPredicted RBP10.68□□□□□ -0.7
TMEM39A-212ENST00000497993 TRIM35Q9UPQ4 493 aa10.68□□□□□ -0.7
TMEM39A-212ENST00000497993 TOP2AP11388 1531 aaKnown RBP10.68□□□□□ -0.7
TMEM39A-212ENST00000497993 RSF1Q96T23 1441 aaPredicted RBP10.67□□□□□ -0.7
TMEM39A-212ENST00000497993 PRDM2Q13029 1718 aa10.67□□□□□ -0.7
TMEM39A-212ENST00000497993 SOX12O15370 315 aa10.67□□□□□ -0.7
TMEM39A-212ENST00000497993 MKRN3Q13064 507 aaKnown RBP10.66□□□□□ -0.7
TMEM39A-212ENST00000497993 ERICH6Q7L0X2 663 aa10.65□□□□□ -0.7
TMEM39A-212ENST00000497993 EFCAB3Q8N7B9 438 aa10.65□□□□□ -0.7
TMEM39A-212ENST00000497993 RYDENQ9NUL5 291 aaKnown RBP10.65□□□□□ -0.7
TMEM39A-212ENST00000497993 NKX1-1Q15270 411 aaPredicted RBP10.63□□□□□ -0.71
TMEM39A-212ENST00000497993 IER5LQ5T953 404 aa10.63□□□□□ -0.71
TMEM39A-212ENST00000497993 THOC2Q8NI27 1593 aaKnown RBP10.62□□□□□ -0.71
TMEM39A-212ENST00000497993 POTEIP0CG38 1075 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms