RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 POTEB2H3BUK9 544 aa11.87□□□□□ -0.51
CSMD3-208ENST00000497026 PLEKHG5O94827 1062 aa11.87□□□□□ -0.51
CSMD3-208ENST00000497026 FBXO3Q9UK99 471 aa11.86□□□□□ -0.51
CSMD3-208ENST00000497026 MAMSTRQ6ZN01 415 aa11.83□□□□□ -0.52
CSMD3-208ENST00000497026 NISCHQ9Y2I1 1504 aa11.8□□□□□ -0.52
CSMD3-208ENST00000497026 TSPYL2Q9H2G4 693 aaPredicted RBP11.78□□□□□ -0.52
CSMD3-208ENST00000497026 C7P10643 843 aa11.77□□□□□ -0.53
CSMD3-208ENST00000497026 VASPP50552 380 aaPredicted RBP11.77□□□□□ -0.53
CSMD3-208ENST00000497026 SLC39A7Q92504 469 aa11.77□□□□□ -0.53
CSMD3-208ENST00000497026 PHF12Q96QT6 1004 aa11.76□□□□□ -0.53
CSMD3-208ENST00000497026 RASEFQ8IZ41 740 aa11.74□□□□□ -0.53
CSMD3-208ENST00000497026 METRNQ9UJH8 293 aa11.73□□□□□ -0.53
CSMD3-208ENST00000497026 PELP1Q8IZL8 1130 aaKnown RBP11.72□□□□□ -0.53
CSMD3-208ENST00000497026 ASTLQ6HA08 431 aaPredicted RBP11.71□□□□□ -0.53
CSMD3-208ENST00000497026 ZBTB47Q9UFB7 747 aaPredicted RBP11.7□□□□□ -0.54
CSMD3-208ENST00000497026 KLHL34Q8N239 644 aa11.69□□□□□ -0.54
CSMD3-208ENST00000497026 NUBP1P53384 320 aa11.68□□□□□ -0.54
CSMD3-208ENST00000497026 SCUBE2Q9NQ36 999 aa11.68□□□□□ -0.54
CSMD3-208ENST00000497026 ATMINO43313 823 aaPredicted RBP11.65□□□□□ -0.54
CSMD3-208ENST00000497026 CCDC61Q9Y6R9 512 aa11.64□□□□□ -0.55
CSMD3-208ENST00000497026 FAM163AQ96GL9 167 aaPredicted RBP11.63□□□□□ -0.55
CSMD3-208ENST00000497026 IFNLR1Q8IU57 520 aaPredicted RBP11.61□□□□□ -0.55
CSMD3-208ENST00000497026 MS4A3Q96HJ5 214 aa11.6□□□□□ -0.55
CSMD3-208ENST00000497026 POTEJP0CG39 1038 aa11.59□□□□□ -0.55
CSMD3-208ENST00000497026 DCAF8Q5TAQ9 597 aa11.58□□□□□ -0.56
CSMD3-208ENST00000497026 FAM212AQ96EL1 285 aa11.57□□□□□ -0.56
CSMD3-208ENST00000497026 KIF12Q96FN5 646 aa11.55□□□□□ -0.56
CSMD3-208ENST00000497026 LCE2DQ5TA82 110 aaPredicted RBP11.54□□□□□ -0.56
CSMD3-208ENST00000497026 MAP3K13O43283 966 aa11.53□□□□□ -0.56
CSMD3-208ENST00000497026 SPOCK2Q92563 424 aa11.5□□□□□ -0.57
CSMD3-208ENST00000497026 PYGBP11216 843 aa11.48□□□□□ -0.57
CSMD3-208ENST00000497026 ATN1P54259 1190 aaPredicted RBP11.48□□□□□ -0.57
CSMD3-208ENST00000497026 TRPC6Q9Y210 931 aa11.48□□□□□ -0.57
CSMD3-208ENST00000497026 PCDHB13Q9Y5F0 798 aa11.45□□□□□ -0.58
CSMD3-208ENST00000497026 CIZ1Q9ULV3 898 aaPredicted RBP11.44□□□□□ -0.58
CSMD3-208ENST00000497026 CDAN1Q8IWY9 1227 aa11.43□□□□□ -0.58
CSMD3-208ENST00000497026 GSE1Q14687 1217 aa11.42□□□□□ -0.58
CSMD3-208ENST00000497026 IFNL1Q8IU54 200 aa11.41□□□□□ -0.58
CSMD3-208ENST00000497026 TIE1P35590 1138 aa11.39□□□□□ -0.59
CSMD3-208ENST00000497026 SEC24BO95487 1268 aa11.37□□□□□ -0.59
CSMD3-208ENST00000497026 BMP2KQ9NSY1 1161 aaPredicted RBP11.37□□□□□ -0.59
CSMD3-208ENST00000497026 PCDHB8Q9UN66 801 aa11.36□□□□□ -0.59
CSMD3-208ENST00000497026 POTEFA5A3E0 1075 aa11.35□□□□□ -0.59
CSMD3-208ENST00000497026 SGIP1Q9BQI5 828 aa11.35□□□□□ -0.59
CSMD3-208ENST00000497026 TTLL13PA6NNM8 815 aa11.31□□□□□ -0.6
CSMD3-208ENST00000497026 IER5LQ5T953 404 aa11.3□□□□□ -0.6
CSMD3-208ENST00000497026 TMEM106CQ9BVX2 250 aa11.28□□□□□ -0.6
CSMD3-208ENST00000497026 CHRM1P11229 460 aaPredicted RBP11.26□□□□□ -0.61
CSMD3-208ENST00000497026 TRIM35Q9UPQ4 493 aa11.25□□□□□ -0.61
CSMD3-208ENST00000497026 COLQQ9Y215 455 aaPredicted RBP11.25□□□□□ -0.61
CSMD3-208ENST00000497026 ZNF467Q7Z7K2 595 aaPredicted RBP11.23□□□□□ -0.61
CSMD3-208ENST00000497026 SLAIN1Q8ND83 568 aa11.23□□□□□ -0.61
CSMD3-208ENST00000497026 ST18O60284 1047 aa11.22□□□□□ -0.61
CSMD3-208ENST00000497026 MMRN1Q13201 1228 aa11.18□□□□□ -0.62
CSMD3-208ENST00000497026 TMEM121BQ9BXQ6 578 aaPredicted RBP11.18□□□□□ -0.62
CSMD3-208ENST00000497026 PSEN1P49768 467 aa11.18□□□□□ -0.62
CSMD3-208ENST00000497026 SNPHO15079 494 aa11.15□□□□□ -0.62
CSMD3-208ENST00000497026 SPNS2Q8IVW8 549 aa11.15□□□□□ -0.62
CSMD3-208ENST00000497026 TRIM41Q8WV44 630 aa11.15□□□□□ -0.62
CSMD3-208ENST00000497026 PDAP1Q13442 181 aaKnown RBP11.14□□□□□ -0.63
CSMD3-208ENST00000497026 RNF25Q96BH1 459 aaPredicted RBP11.13□□□□□ -0.63
CSMD3-208ENST00000497026 PLCG2P16885 1265 aa11.11□□□□□ -0.63
CSMD3-208ENST00000497026 ECM2O94769 699 aaPredicted RBP11.09□□□□□ -0.63
CSMD3-208ENST00000497026 PKD2Q13563 968 aa11.09□□□□□ -0.63
CSMD3-208ENST00000497026 RIOK3O14730 519 aaKnown RBP11.08□□□□□ -0.64
CSMD3-208ENST00000497026 GOLGA2Q08379 1002 aa11.08□□□□□ -0.64
CSMD3-208ENST00000497026 CABP2Q9NPB3 220 aa11.07□□□□□ -0.64
CSMD3-208ENST00000497026 IRX5P78411 483 aaPredicted RBP11.05□□□□□ -0.64
CSMD3-208ENST00000497026 MKRN3Q13064 507 aaKnown RBP11.04□□□□□ -0.64
CSMD3-208ENST00000497026 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.01□□□□□ -0.65
CSMD3-208ENST00000497026 RGL2O15211 777 aa11.01□□□□□ -0.65
CSMD3-208ENST00000497026 ZFP91Q96JP5 570 aaPredicted RBP11.01□□□□□ -0.65
CSMD3-208ENST00000497026 OCEL1Q9H607 264 aa11.01□□□□□ -0.65
CSMD3-208ENST00000497026 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.01□□□□□ -0.65
CSMD3-208ENST00000497026 VGFO15240 615 aaPredicted RBP11□□□□□ -0.65
CSMD3-208ENST00000497026 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.99□□□□□ -0.65
CSMD3-208ENST00000497026 EFCAB3Q8N7B9 438 aa10.97□□□□□ -0.65
CSMD3-208ENST00000497026 PDCD7Q8N8D1 485 aaKnown RBP10.95□□□□□ -0.66
CSMD3-208ENST00000497026 DPY19L2Q6NUT2 758 aa10.93□□□□□ -0.66
CSMD3-208ENST00000497026 MARVELD3Q96A59 401 aa10.92□□□□□ -0.66
CSMD3-208ENST00000497026 BCL11BQ9C0K0 894 aaPredicted RBP10.92□□□□□ -0.66
CSMD3-208ENST00000497026 STK24Q9Y6E0 443 aa10.92□□□□□ -0.66
CSMD3-208ENST00000497026 STK25O00506 426 aa10.9□□□□□ -0.66
CSMD3-208ENST00000497026 EMP3P54852 163 aa10.88□□□□□ -0.67
CSMD3-208ENST00000497026 TAOK2Q9UL54 1235 aa10.88□□□□□ -0.67
CSMD3-208ENST00000497026 ILDR1Q86SU0 546 aaPredicted RBP10.86□□□□□ -0.67
CSMD3-208ENST00000497026 PHF8Q9UPP1 1060 aa10.85□□□□□ -0.67
CSMD3-208ENST00000497026 C3orf67Q6ZVT6 689 aa10.83□□□□□ -0.68
CSMD3-208ENST00000497026 L3MBTL3Q96JM7 780 aaPredicted RBP10.83□□□□□ -0.68
CSMD3-208ENST00000497026 SOX12O15370 315 aa10.81□□□□□ -0.68
CSMD3-208ENST00000497026 MS4A4AQ96JQ5 239 aa10.81□□□□□ -0.68
CSMD3-208ENST00000497026 HS3ST6Q96QI5 342 aa10.8□□□□□ -0.68
CSMD3-208ENST00000497026 G3V3G9 751 aa10.78□□□□□ -0.68
CSMD3-208ENST00000497026 KRTAP3-3Q9BYR6 98 aa10.78□□□□□ -0.68
CSMD3-208ENST00000497026 KRTAP3-2Q9BYR7 98 aa10.78□□□□□ -0.68
CSMD3-208ENST00000497026 BOLA1Q9Y3E2 137 aa10.78□□□□□ -0.68
CSMD3-208ENST00000497026 FAM205CA6NFA0 338 aa10.76□□□□□ -0.69
CSMD3-208ENST00000497026 CHGAP10645 457 aaKnown RBP10.76□□□□□ -0.69
CSMD3-208ENST00000497026 MFRPQ9BY79 579 aa10.76□□□□□ -0.69
CSMD3-208ENST00000497026 DCAF8L2P0C7V8 631 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms