RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 UPF2Q9HAU5 1272 aaKnown RBP17.61■□□□□ 0.41
PTPRF-215ENST00000496447 DCAF1Q9Y4B6 1507 aa17.59■□□□□ 0.41
PTPRF-215ENST00000496447 RSF1Q96T23 1441 aaPredicted RBP17.59■□□□□ 0.41
PTPRF-215ENST00000496447 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.58■□□□□ 0.41
PTPRF-215ENST00000496447 FKBP8Q14318 412 aa17.57■□□□□ 0.4
PTPRF-215ENST00000496447 BAZ1BQ9UIG0 1483 aaKnown RBP17.57■□□□□ 0.4
PTPRF-215ENST00000496447 ERCC6Q03468 1493 aa17.57■□□□□ 0.4
PTPRF-215ENST00000496447 MRS2Q9HD23 443 aa17.54■□□□□ 0.4
PTPRF-215ENST00000496447 HAP1P54257 671 aaPredicted RBP17.52■□□□□ 0.39
PTPRF-215ENST00000496447 CFDP1Q9UEE9 299 aaPredicted RBP17.51■□□□□ 0.39
PTPRF-215ENST00000496447 RGL3Q3MIN7 710 aa17.5■□□□□ 0.39
PTPRF-215ENST00000496447 EIF4G2P78344 907 aaKnown RBP eCLIP17.49■□□□□ 0.39
PTPRF-215ENST00000496447 ANP32BQ92688 251 aaKnown RBP17.49■□□□□ 0.39
PTPRF-215ENST00000496447 NACADO15069 1562 aa17.48■□□□□ 0.39
PTPRF-215ENST00000496447 GOLGA3Q08378 1498 aa17.48■□□□□ 0.39
PTPRF-215ENST00000496447 WRNQ14191 1432 aaPredicted RBP eCLIP17.47■□□□□ 0.39
PTPRF-215ENST00000496447 EEA1Q15075 1411 aa17.47■□□□□ 0.39
PTPRF-215ENST00000496447 MYH16Q9H6N6 1097 aa17.47■□□□□ 0.39
PTPRF-215ENST00000496447 KIF27Q86VH2 1401 aa17.46■□□□□ 0.39
PTPRF-215ENST00000496447 CCDC136Q96JN2 1154 aa17.46■□□□□ 0.38
PTPRF-215ENST00000496447 HIRIP3Q9BW71 556 aaPredicted RBP17.45■□□□□ 0.38
PTPRF-215ENST00000496447 CEP162Q5TB80 1403 aa17.38■□□□□ 0.37
PTPRF-215ENST00000496447 CFAP53Q96M91 514 aa17.38■□□□□ 0.37
PTPRF-215ENST00000496447 NBR1Q14596 966 aa17.38■□□□□ 0.37
PTPRF-215ENST00000496447 CDCA8Q53HL2 280 aa17.38■□□□□ 0.37
PTPRF-215ENST00000496447 TRHP20396 242 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-215ENST00000496447 PPM1GO15355 546 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-215ENST00000496447 ARXQ96QS3 562 aa17.34■□□□□ 0.37
PTPRF-215ENST00000496447 LMOD2Q6P5Q4 547 aa17.34■□□□□ 0.37
PTPRF-215ENST00000496447 KNSTRNQ9Y448 316 aa17.33■□□□□ 0.37
PTPRF-215ENST00000496447 POGKQ9P215 609 aa17.33■□□□□ 0.36
PTPRF-215ENST00000496447 CARD11Q9BXL7 1154 aa17.31■□□□□ 0.36
PTPRF-215ENST00000496447 CEP164Q9UPV0 1460 aa17.3■□□□□ 0.36
PTPRF-215ENST00000496447 CCNB3Q8WWL7 1395 aa17.26■□□□□ 0.35
PTPRF-215ENST00000496447 IRX6P78412 446 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-215ENST00000496447 EIF4G1Q04637 1599 aaKnown RBP17.25■□□□□ 0.35
PTPRF-215ENST00000496447 MLECQ14165 292 aa17.24■□□□□ 0.35
PTPRF-215ENST00000496447 TNIKQ9UKE5 1360 aa17.23■□□□□ 0.35
PTPRF-215ENST00000496447 BAZ1AQ9NRL2 1556 aaPredicted RBP17.23■□□□□ 0.35
PTPRF-215ENST00000496447 MAPK8IP3Q9UPT6 1336 aa17.22■□□□□ 0.35
PTPRF-215ENST00000496447 MIER1Q8N108 512 aa17.21■□□□□ 0.35
PTPRF-215ENST00000496447 NUDCQ9Y266 331 aa17.21■□□□□ 0.35
PTPRF-215ENST00000496447 KANK1Q14678 1352 aa17.21■□□□□ 0.34
PTPRF-215ENST00000496447 LAS1LQ9Y4W2 734 aaKnown RBP17.2■□□□□ 0.34
PTPRF-215ENST00000496447 HDGFP51858 240 aaKnown RBP17.18■□□□□ 0.34
PTPRF-215ENST00000496447 NEUROD2Q15784 382 aa17.18■□□□□ 0.34
PTPRF-215ENST00000496447 CDK11BP21127 795 aaKnown RBP17.18■□□□□ 0.34
PTPRF-215ENST00000496447 CUX2O14529 1486 aa17.17■□□□□ 0.34
PTPRF-215ENST00000496447 CARMIL1Q5VZK9 1371 aa17.17■□□□□ 0.34
PTPRF-215ENST00000496447 NPHP1O15259 732 aa17.17■□□□□ 0.34
PTPRF-215ENST00000496447 SENP3-EIF4A1A0A087X0R7 540 aa17.17■□□□□ 0.34
PTPRF-215ENST00000496447 FTSJ3Q8IY81 847 aaKnown RBP17.16■□□□□ 0.34
PTPRF-215ENST00000496447 FHAD1B1AJZ9 1412 aa17.16■□□□□ 0.34
PTPRF-215ENST00000496447 TNNT2P45379 298 aaPredicted RBP17.16■□□□□ 0.34
PTPRF-215ENST00000496447 U2SURPO15042 1029 aaKnown RBP17.1■□□□□ 0.33
PTPRF-215ENST00000496447 SIN3AQ96ST3 1273 aa17.1■□□□□ 0.33
PTPRF-215ENST00000496447 CASC1Q6TDU7 716 aa17.09■□□□□ 0.33
PTPRF-215ENST00000496447 NCLP19338 710 aaKnown RBP17.09■□□□□ 0.33
PTPRF-215ENST00000496447 BECN1Q14457 450 aa17.09■□□□□ 0.33
PTPRF-215ENST00000496447 DCAF11Q8TEB1 546 aa17.09■□□□□ 0.33
PTPRF-215ENST00000496447 GGT6Q6P531 493 aa17.09■□□□□ 0.33
PTPRF-215ENST00000496447 CC2D1BQ5T0F9 858 aaKnown RBP17.09■□□□□ 0.33
PTPRF-215ENST00000496447 CECR2Q9BXF3 1484 aa17.08■□□□□ 0.33
PTPRF-215ENST00000496447 ERICH6BQ5W0A0 696 aa17.08■□□□□ 0.32
PTPRF-215ENST00000496447 SRPK2P78362 688 aaKnown RBP17.07■□□□□ 0.32
PTPRF-215ENST00000496447 TMF1P82094 1093 aa17.07■□□□□ 0.32
PTPRF-215ENST00000496447 CARMIL2Q6F5E8 1435 aa17.06■□□□□ 0.32
PTPRF-215ENST00000496447 MYO15BQ96JP2 1530 aa17.06■□□□□ 0.32
PTPRF-215ENST00000496447 SOX12O15370 315 aa17.06■□□□□ 0.32
PTPRF-215ENST00000496447 PDS5BQ9NTI5 1447 aa17.06■□□□□ 0.32
PTPRF-215ENST00000496447 PNNQ9H307 717 aaKnown RBP17.05■□□□□ 0.32
PTPRF-215ENST00000496447 DDRGK1Q96HY6 314 aa17.04■□□□□ 0.32
PTPRF-215ENST00000496447 SAFB2Q14151 953 aaKnown RBP eCLIP17.04■□□□□ 0.32
PTPRF-215ENST00000496447 OS9Q13438 667 aaPredicted RBP17.02■□□□□ 0.31
PTPRF-215ENST00000496447 FRAT1Q92837 279 aaPredicted RBP17.02■□□□□ 0.31
PTPRF-215ENST00000496447 SUPT16HQ9Y5B9 1047 aaKnown RBP17.02■□□□□ 0.31
PTPRF-215ENST00000496447 GOLGA6L22H0YM25 854 aa17.01■□□□□ 0.31
PTPRF-215ENST00000496447 CHMP4BQ9H444 224 aaKnown RBP16.99■□□□□ 0.31
PTPRF-215ENST00000496447 DEKP35659 375 aaKnown RBP16.99■□□□□ 0.31
PTPRF-215ENST00000496447 STK26Q9P289 416 aa16.99■□□□□ 0.31
PTPRF-215ENST00000496447 ZRSR1Q15695 479 aaKnown RBP16.98■□□□□ 0.31
PTPRF-215ENST00000496447 SOGA1O94964 1423 aa16.97■□□□□ 0.31
PTPRF-215ENST00000496447 GOLGA2Q08379 1002 aa16.96■□□□□ 0.31
PTPRF-215ENST00000496447 NOP58Q9Y2X3 529 aaKnown RBP16.96■□□□□ 0.31
PTPRF-215ENST00000496447 MORC1Q86VD1 984 aa16.96■□□□□ 0.31
PTPRF-215ENST00000496447 MS4A1P11836 297 aa16.96■□□□□ 0.3
PTPRF-215ENST00000496447 RTN4Q9NQC3 1192 aaKnown RBP16.95■□□□□ 0.3
PTPRF-215ENST00000496447 EFCAB2Q5VUJ9 269 aa16.95■□□□□ 0.3
PTPRF-215ENST00000496447 TDRD9Q8NDG6 1382 aaKnown RBP16.95■□□□□ 0.3
PTPRF-215ENST00000496447 ARHGAP35Q9NRY4 1499 aa16.94■□□□□ 0.3
PTPRF-215ENST00000496447 SMARCA2P51531 1590 aa16.94■□□□□ 0.3
PTPRF-215ENST00000496447 PKD2Q13563 968 aa16.94■□□□□ 0.3
PTPRF-215ENST00000496447 TULP1O00294 542 aaPredicted RBP16.93■□□□□ 0.3
PTPRF-215ENST00000496447 HDGFL2Q7Z4V5 671 aaPredicted RBP16.93■□□□□ 0.3
PTPRF-215ENST00000496447 TRIM44Q96DX7 344 aaPredicted RBP16.92■□□□□ 0.3
PTPRF-215ENST00000496447 PAK3O75914 559 aaPredicted RBP16.91■□□□□ 0.3
PTPRF-215ENST00000496447 TPRNQ4KMQ1 711 aa16.91■□□□□ 0.3
PTPRF-215ENST00000496447 TAOK2Q9UL54 1235 aa16.91■□□□□ 0.3
PTPRF-215ENST00000496447 RTF1Q92541 710 aaKnown RBP16.91■□□□□ 0.3
PTPRF-215ENST00000496447 FGD1P98174 961 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms