RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 SLC39A7Q92504 469 aa6.7□□□□□ -1.34
HMGB1-208ENST00000490788 STAG3Q9UJ98 1225 aa6.68□□□□□ -1.34
HMGB1-208ENST00000490788 SPDYE4A6NLX3 237 aa6.66□□□□□ -1.34
HMGB1-208ENST00000490788 PELP1Q8IZL8 1130 aaKnown RBP6.66□□□□□ -1.34
HMGB1-208ENST00000490788 ZRANB1Q9UGI0 708 aa6.65□□□□□ -1.34
HMGB1-208ENST00000490788 FKBP8Q14318 412 aa6.64□□□□□ -1.35
HMGB1-208ENST00000490788 ASTLQ6HA08 431 aaPredicted RBP6.61□□□□□ -1.35
HMGB1-208ENST00000490788 CREBZFQ9NS37 354 aa6.6□□□□□ -1.35
HMGB1-208ENST00000490788 ST18O60284 1047 aa6.55□□□□□ -1.36
HMGB1-208ENST00000490788 PAK3O75914 559 aaPredicted RBP6.53□□□□□ -1.36
HMGB1-208ENST00000490788 NPM1P06748 294 aaKnown RBP eCLIP6.53□□□□□ -1.36
HMGB1-208ENST00000490788 TMEM121BQ9BXQ6 578 aaPredicted RBP6.53□□□□□ -1.36
HMGB1-208ENST00000490788 ATMINO43313 823 aaPredicted RBP6.52□□□□□ -1.37
HMGB1-208ENST00000490788 MNX1P50219 401 aaPredicted RBP6.48□□□□□ -1.37
HMGB1-208ENST00000490788 FBXO3Q9UK99 471 aa6.46□□□□□ -1.38
HMGB1-208ENST00000490788 PROM2Q8N271 834 aa6.44□□□□□ -1.38
HMGB1-208ENST00000490788 PHF12Q96QT6 1004 aa6.44□□□□□ -1.38
HMGB1-208ENST00000490788 PLEKHG5O94827 1062 aa6.4□□□□□ -1.38
HMGB1-208ENST00000490788 POTEFA5A3E0 1075 aa6.39□□□□□ -1.39
HMGB1-208ENST00000490788 MS4A3Q96HJ5 214 aa6.37□□□□□ -1.39
HMGB1-208ENST00000490788 PLCD3Q8N3E9 789 aa6.36□□□□□ -1.39
HMGB1-208ENST00000490788 MIER1Q8N108 512 aa6.35□□□□□ -1.39
HMGB1-208ENST00000490788 CCDC61Q9Y6R9 512 aa6.35□□□□□ -1.39
HMGB1-208ENST00000490788 ATN1P54259 1190 aaPredicted RBP6.34□□□□□ -1.39
HMGB1-208ENST00000490788 SLAIN1Q8ND83 568 aa6.34□□□□□ -1.39
HMGB1-208ENST00000490788 KRTAP3-3Q9BYR6 98 aa6.34□□□□□ -1.39
HMGB1-208ENST00000490788 KRTAP3-2Q9BYR7 98 aa6.34□□□□□ -1.39
HMGB1-208ENST00000490788 SNPHO15079 494 aa6.33□□□□□ -1.4
HMGB1-208ENST00000490788 KIF12Q96FN5 646 aa6.33□□□□□ -1.4
HMGB1-208ENST00000490788 TSPYL2Q9H2G4 693 aaPredicted RBP6.33□□□□□ -1.4
HMGB1-208ENST00000490788 VASPP50552 380 aaPredicted RBP6.32□□□□□ -1.4
HMGB1-208ENST00000490788 ZBTB47Q9UFB7 747 aaPredicted RBP6.3□□□□□ -1.4
HMGB1-208ENST00000490788 KLHL34Q8N239 644 aa6.29□□□□□ -1.4
HMGB1-208ENST00000490788 RNF166Q96A37 237 aaPredicted RBP6.29□□□□□ -1.4
HMGB1-208ENST00000490788 TIE1P35590 1138 aa6.28□□□□□ -1.4
HMGB1-208ENST00000490788 MARVELD3Q96A59 401 aa6.27□□□□□ -1.41
HMGB1-208ENST00000490788 MAP3K13O43283 966 aa6.26□□□□□ -1.41
HMGB1-208ENST00000490788 SEC24BO95487 1268 aa6.26□□□□□ -1.41
HMGB1-208ENST00000490788 SGIP1Q9BQI5 828 aa6.26□□□□□ -1.41
HMGB1-208ENST00000490788 BMP2KQ9NSY1 1161 aaPredicted RBP6.26□□□□□ -1.41
HMGB1-208ENST00000490788 RASEFQ8IZ41 740 aa6.25□□□□□ -1.41
HMGB1-208ENST00000490788 IER5LQ5T953 404 aa6.22□□□□□ -1.41
HMGB1-208ENST00000490788 COLQQ9Y215 455 aaPredicted RBP6.22□□□□□ -1.41
HMGB1-208ENST00000490788 TTLL13PA6NNM8 815 aa6.21□□□□□ -1.42
HMGB1-208ENST00000490788 EMP3P54852 163 aa6.21□□□□□ -1.42
HMGB1-208ENST00000490788 TRPC6Q9Y210 931 aa6.21□□□□□ -1.42
HMGB1-208ENST00000490788 HS3ST6Q96QI5 342 aa6.2□□□□□ -1.42
HMGB1-208ENST00000490788 NUBP1P53384 320 aa6.19□□□□□ -1.42
HMGB1-208ENST00000490788 IFNLR1Q8IU57 520 aaPredicted RBP6.18□□□□□ -1.42
HMGB1-208ENST00000490788 SPOCK2Q92563 424 aa6.18□□□□□ -1.42
HMGB1-208ENST00000490788 PCDHB13Q9Y5F0 798 aa6.18□□□□□ -1.42
HMGB1-208ENST00000490788 FAM212AQ96EL1 285 aa6.16□□□□□ -1.42
HMGB1-208ENST00000490788 TRIM35Q9UPQ4 493 aa6.16□□□□□ -1.42
HMGB1-208ENST00000490788 MYT1LQ9UL68 1186 aa6.14□□□□□ -1.43
HMGB1-208ENST00000490788 POTEB3A0JP26 581 aa6.13□□□□□ -1.43
HMGB1-208ENST00000490788 DCAF8Q5TAQ9 597 aa6.13□□□□□ -1.43
HMGB1-208ENST00000490788 POTEBQ6S5H4 581 aa6.13□□□□□ -1.43
HMGB1-208ENST00000490788 IFNL1Q8IU54 200 aa6.13□□□□□ -1.43
HMGB1-208ENST00000490788 GSE1Q14687 1217 aa6.12□□□□□ -1.43
HMGB1-208ENST00000490788 TMEM106CQ9BVX2 250 aa6.12□□□□□ -1.43
HMGB1-208ENST00000490788 CIZ1Q9ULV3 898 aaPredicted RBP6.12□□□□□ -1.43
HMGB1-208ENST00000490788 FAM205CA6NFA0 338 aa6.11□□□□□ -1.43
HMGB1-208ENST00000490788 PLCG2P16885 1265 aa6.1□□□□□ -1.43
HMGB1-208ENST00000490788 PTGER2P43116 358 aa6.1□□□□□ -1.43
HMGB1-208ENST00000490788 IRX5P78411 483 aaPredicted RBP6.08□□□□□ -1.44
HMGB1-208ENST00000490788 OCEL1Q9H607 264 aa6.07□□□□□ -1.44
HMGB1-208ENST00000490788 TRIM41Q8WV44 630 aa6.05□□□□□ -1.44
HMGB1-208ENST00000490788 AMER1Q5JTC6 1135 aaPredicted RBP6.04□□□□□ -1.44
HMGB1-208ENST00000490788 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.04□□□□□ -1.44
HMGB1-208ENST00000490788 PYGBP11216 843 aa6.03□□□□□ -1.44
HMGB1-208ENST00000490788 ECM2O94769 699 aaPredicted RBP6.02□□□□□ -1.45
HMGB1-208ENST00000490788 CHRM1P11229 460 aaPredicted RBP6.01□□□□□ -1.45
HMGB1-208ENST00000490788 ZNF467Q7Z7K2 595 aaPredicted RBP6.01□□□□□ -1.45
HMGB1-208ENST00000490788 PLA2G2EQ9NZK7 142 aa6.01□□□□□ -1.45
HMGB1-208ENST00000490788 PCDHB8Q9UN66 801 aa6.01□□□□□ -1.45
HMGB1-208ENST00000490788 L3MBTL3Q96JM7 780 aaPredicted RBP5.98□□□□□ -1.45
HMGB1-208ENST00000490788 TAOK2Q9UL54 1235 aa5.97□□□□□ -1.45
HMGB1-208ENST00000490788 RGS20O76081 388 aa5.96□□□□□ -1.46
HMGB1-208ENST00000490788 DCAF8L2P0C7V8 631 aa5.96□□□□□ -1.46
HMGB1-208ENST00000490788 GOLGA2Q08379 1002 aa5.96□□□□□ -1.46
HMGB1-208ENST00000490788 MKRN3Q13064 507 aaKnown RBP5.96□□□□□ -1.46
HMGB1-208ENST00000490788 PDCD7Q8N8D1 485 aaKnown RBP5.96□□□□□ -1.46
HMGB1-208ENST00000490788 PKD2Q13563 968 aa5.95□□□□□ -1.46
HMGB1-208ENST00000490788 IRX2Q9BZI1 471 aaPredicted RBP5.95□□□□□ -1.46
HMGB1-208ENST00000490788 RTN4Q9NQC3 1192 aaKnown RBP5.95□□□□□ -1.46
HMGB1-208ENST00000490788 RIOK3O14730 519 aaKnown RBP5.93□□□□□ -1.46
HMGB1-208ENST00000490788 PSEN1P49768 467 aa5.93□□□□□ -1.46
HMGB1-208ENST00000490788 C3orf67Q6ZVT6 689 aa5.93□□□□□ -1.46
HMGB1-208ENST00000490788 ILDR1Q86SU0 546 aaPredicted RBP5.92□□□□□ -1.46
HMGB1-208ENST00000490788 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.92□□□□□ -1.464e-6■■■■■ 27.4
HMGB1-208ENST00000490788 PDAP1Q13442 181 aaKnown RBP5.91□□□□□ -1.46
HMGB1-208ENST00000490788 VGFO15240 615 aaPredicted RBP5.9□□□□□ -1.46
HMGB1-208ENST00000490788 RGL2O15211 777 aa5.89□□□□□ -1.47
HMGB1-208ENST00000490788 RNF25Q96BH1 459 aaPredicted RBP5.86□□□□□ -1.47
HMGB1-208ENST00000490788 ERBB3P21860 1342 aa5.85□□□□□ -1.47
HMGB1-208ENST00000490788 G3V3G9 751 aa5.85□□□□□ -1.47
HMGB1-208ENST00000490788 STK25O00506 426 aa5.85□□□□□ -1.47
HMGB1-208ENST00000490788 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.84□□□□□ -1.47
HMGB1-208ENST00000490788 HOXB1P14653 301 aaPredicted RBP5.84□□□□□ -1.47
HMGB1-208ENST00000490788 ZFP91Q96JP5 570 aaPredicted RBP5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms