RNA–Protein interactions for RNA: ENST00000490163.5

UBXN4-208, Transcript of UBX domain protein 4, humanhuman

TSL 2

Gene UBXN4, Length 3,394 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-208ENST00000490163 SPDYE2Q495Y8 402 aa5.82□□□□□ -1.48
UBXN4-208ENST00000490163 NBR1Q14596 966 aa5.81□□□□□ -1.48
UBXN4-208ENST00000490163 ZBTB47Q9UFB7 747 aaPredicted RBP5.8□□□□□ -1.48
UBXN4-208ENST00000490163 TESPA1A2RU30 521 aaPredicted RBP5.8□□□□□ -1.48
UBXN4-208ENST00000490163 RIOK3O14730 519 aaKnown RBP5.8□□□□□ -1.48
UBXN4-208ENST00000490163 GSE1Q14687 1217 aa5.8□□□□□ -1.48
UBXN4-208ENST00000490163 P3H3Q8IVL6 736 aa5.79□□□□□ -1.48
UBXN4-208ENST00000490163 HRCP23327 699 aa5.78□□□□□ -1.48
UBXN4-208ENST00000490163 ZC3H15Q8WU90 426 aaKnown RBP5.77□□□□□ -1.49
UBXN4-208ENST00000490163 POLA2Q14181 598 aa5.77□□□□□ -1.49
UBXN4-208ENST00000490163 ARHGEF1Q92888 912 aaKnown RBP5.76□□□□□ -1.49
UBXN4-208ENST00000490163 RYDENQ9NUL5 291 aaKnown RBP5.76□□□□□ -1.49
UBXN4-208ENST00000490163 VGFO15240 615 aaPredicted RBP5.76□□□□□ -1.49
UBXN4-208ENST00000490163 MFSD10Q14728 455 aa5.75□□□□□ -1.49
UBXN4-208ENST00000490163 CHGAP10645 457 aaKnown RBP5.74□□□□□ -1.49
UBXN4-208ENST00000490163 CADPS2Q86UW7 1296 aa5.73□□□□□ -1.49
UBXN4-208ENST00000490163 CAMK2BQ13554 666 aa5.73□□□□□ -1.49
UBXN4-208ENST00000490163 KCNV2Q8TDN2 545 aa5.73□□□□□ -1.49
UBXN4-208ENST00000490163 ONECUT3O60422 494 aaPredicted RBP5.72□□□□□ -1.49
UBXN4-208ENST00000490163 SPINK5Q9NQ38 1064 aaPredicted RBP5.72□□□□□ -1.49
UBXN4-208ENST00000490163 LMOD2Q6P5Q4 547 aa5.72□□□□□ -1.49
UBXN4-208ENST00000490163 BARGINQ6ZT62 677 aa5.71□□□□□ -1.5
UBXN4-208ENST00000490163 C14orf37Q86TY3 774 aa5.71□□□□□ -1.5
UBXN4-208ENST00000490163 ZMYND15Q9H091 742 aa5.68□□□□□ -1.5
UBXN4-208ENST00000490163 GOPCQ9HD26 462 aa5.68□□□□□ -1.5
UBXN4-208ENST00000490163 CREBZFQ9NS37 354 aa5.68□□□□□ -1.5
UBXN4-208ENST00000490163 DSG3P32926 999 aa5.67□□□□□ -1.5
UBXN4-208ENST00000490163 ILDR1Q86SU0 546 aaPredicted RBP5.67□□□□□ -1.5
UBXN4-208ENST00000490163 TRHP20396 242 aaPredicted RBP5.66□□□□□ -1.5
UBXN4-208ENST00000490163 FBXO22Q8NEZ5 403 aa5.65□□□□□ -1.5
UBXN4-208ENST00000490163 GPR37O15354 613 aa5.64□□□□□ -1.51
UBXN4-208ENST00000490163 C1orf115Q9H7X2 142 aa5.64□□□□□ -1.51
UBXN4-208ENST00000490163 ZNF692Q9BU19 519 aaPredicted RBP5.63□□□□□ -1.51
UBXN4-208ENST00000490163 DCAF8L2P0C7V8 631 aa5.62□□□□□ -1.51
UBXN4-208ENST00000490163 TRIM26Q12899 539 aaPredicted RBP5.62□□□□□ -1.51
UBXN4-208ENST00000490163 A6NJR5 290 aa5.61□□□□□ -1.51
UBXN4-208ENST00000490163 KLHL34Q8N239 644 aa5.61□□□□□ -1.51
UBXN4-208ENST00000490163 UBTFP17480 764 aaKnown RBP5.6□□□□□ -1.51
UBXN4-208ENST00000490163 PABPN1Q86U42 306 aaKnown RBP eCLIP5.59□□□□□ -1.512e-6■■□□□ 13.9
UBXN4-208ENST00000490163 TRAIPQ9BWF2 469 aa5.59□□□□□ -1.51
UBXN4-208ENST00000490163 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.59□□□□□ -1.51
UBXN4-208ENST00000490163 SOCS7O14512 581 aa5.59□□□□□ -1.51
UBXN4-208ENST00000490163 ZFP91Q96JP5 570 aaPredicted RBP5.59□□□□□ -1.51
UBXN4-208ENST00000490163 MFRPQ9BY79 579 aa5.59□□□□□ -1.51
UBXN4-208ENST00000490163 NCKAP5LQ9HCH0 1330 aa5.57□□□□□ -1.52
UBXN4-208ENST00000490163 MIER1Q8N108 512 aa5.57□□□□□ -1.52
UBXN4-208ENST00000490163 CRISPLD2Q9H0B8 497 aa5.57□□□□□ -1.52
UBXN4-208ENST00000490163 SLC24A3Q9HC58 644 aa5.56□□□□□ -1.52
UBXN4-208ENST00000490163 FNBP4Q8N3X1 1017 aaPredicted RBP5.56□□□□□ -1.52
UBXN4-208ENST00000490163 TMUB1Q9BVT8 246 aa5.56□□□□□ -1.52
UBXN4-208ENST00000490163 RSPH6AQ9H0K4 717 aa5.56□□□□□ -1.52
UBXN4-208ENST00000490163 PLCD3Q8N3E9 789 aa5.55□□□□□ -1.52
UBXN4-208ENST00000490163 AK7Q96M32 723 aa5.55□□□□□ -1.52
UBXN4-208ENST00000490163 PLEKHG3A1L390 1219 aa5.53□□□□□ -1.52
UBXN4-208ENST00000490163 CAPN15O75808 1086 aa5.53□□□□□ -1.52
UBXN4-208ENST00000490163 AMHR2Q16671 573 aa5.53□□□□□ -1.52
UBXN4-208ENST00000490163 OSCARQ8IYS5 282 aa5.52□□□□□ -1.53
UBXN4-208ENST00000490163 RASEFQ8IZ41 740 aa5.52□□□□□ -1.53
UBXN4-208ENST00000490163 ZNF579Q8NAF0 562 aaKnown RBP5.52□□□□□ -1.53
UBXN4-208ENST00000490163 RGS22Q8NE09 1264 aa5.52□□□□□ -1.53
UBXN4-208ENST00000490163 PODXL2Q9NZ53 605 aa5.52□□□□□ -1.53
UBXN4-208ENST00000490163 TRIM66O15016 1216 aa5.5□□□□□ -1.53
UBXN4-208ENST00000490163 SOX12O15370 315 aa5.5□□□□□ -1.53
UBXN4-208ENST00000490163 E2F4Q16254 413 aa5.5□□□□□ -1.53
UBXN4-208ENST00000490163 BCL11BQ9C0K0 894 aaPredicted RBP5.5□□□□□ -1.53
UBXN4-208ENST00000490163 CIZ1Q9ULV3 898 aaPredicted RBP5.5□□□□□ -1.53
UBXN4-208ENST00000490163 OXER1Q8TDS5 423 aa5.5□□□□□ -1.53
UBXN4-208ENST00000490163 NECTIN2Q92692 538 aa5.48□□□□□ -1.53
UBXN4-208ENST00000490163 STK25O00506 426 aa5.47□□□□□ -1.53
UBXN4-208ENST00000490163 KDM4CQ9H3R0 1056 aa5.47□□□□□ -1.53
UBXN4-208ENST00000490163 SEMA3EO15041 775 aa5.47□□□□□ -1.53
UBXN4-208ENST00000490163 PTGER2P43116 358 aa5.47□□□□□ -1.53
UBXN4-208ENST00000490163 PPP1R37O75864 691 aa5.46□□□□□ -1.53
UBXN4-208ENST00000490163 FLIIQ13045 1269 aa5.46□□□□□ -1.53
UBXN4-208ENST00000490163 FAM212AQ96EL1 285 aa5.46□□□□□ -1.53
UBXN4-208ENST00000490163 PLEKHG5O94827 1062 aa5.46□□□□□ -1.54
UBXN4-208ENST00000490163 SMYD5Q6GMV2 418 aa5.45□□□□□ -1.54
UBXN4-208ENST00000490163 NPM2Q86SE8 214 aaKnown RBP5.45□□□□□ -1.54
UBXN4-208ENST00000490163 IGSF5Q9NSI5 407 aa5.45□□□□□ -1.54
UBXN4-208ENST00000490163 MS4A4AQ96JQ5 239 aa5.44□□□□□ -1.54
UBXN4-208ENST00000490163 TRAK2O60296 914 aa5.44□□□□□ -1.54
UBXN4-208ENST00000490163 PDE4DQ08499 809 aa5.43□□□□□ -1.54
UBXN4-208ENST00000490163 NEUROD2Q15784 382 aa5.43□□□□□ -1.54
UBXN4-208ENST00000490163 MKRN3Q13064 507 aaKnown RBP5.43□□□□□ -1.54
UBXN4-208ENST00000490163 PDAP1Q13442 181 aaKnown RBP5.43□□□□□ -1.54
UBXN4-208ENST00000490163 ZNF467Q7Z7K2 595 aaPredicted RBP5.43□□□□□ -1.54
UBXN4-208ENST00000490163 AKT1S1Q96B36 256 aa5.43□□□□□ -1.54
UBXN4-208ENST00000490163 CCDC61Q9Y6R9 512 aa5.42□□□□□ -1.54
UBXN4-208ENST00000490163 SUPT5HO00267 1087 aaKnown RBP5.42□□□□□ -1.54
UBXN4-208ENST00000490163 STK24Q9Y6E0 443 aa5.42□□□□□ -1.54
UBXN4-208ENST00000490163 PDIA6Q15084 440 aa5.41□□□□□ -1.54
UBXN4-208ENST00000490163 TUSC1Q2TAM9 212 aa5.41□□□□□ -1.54
UBXN4-208ENST00000490163 MINK1Q8N4C8 1332 aaPredicted RBP5.41□□□□□ -1.54
UBXN4-208ENST00000490163 SPDYE16A6NNV3 312 aaPredicted RBP5.39□□□□□ -1.55
UBXN4-208ENST00000490163 SP7Q8TDD2 431 aaPredicted RBP5.38□□□□□ -1.55
UBXN4-208ENST00000490163 SRPK2P78362 688 aaKnown RBP5.38□□□□□ -1.55
UBXN4-208ENST00000490163 KIF3CO14782 793 aa5.37□□□□□ -1.55
UBXN4-208ENST00000490163 DCAF8Q5TAQ9 597 aa5.37□□□□□ -1.55
UBXN4-208ENST00000490163 SPDYE1Q8NFV5 336 aaPredicted RBP5.37□□□□□ -1.55
UBXN4-208ENST00000490163 WDR70Q9NW82 654 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms