RNA–Protein interactions for RNA: ENST00000487539.1

CNN3-206, Transcript of calponin 3, humanhuman

TSL 2

Gene CNN3, Length 739 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNN3-206ENST00000487539 MAMSTRQ6ZN01 415 aa13.33□□□□□ -0.28
CNN3-206ENST00000487539 SLC39A7Q92504 469 aa13.32□□□□□ -0.28
CNN3-206ENST00000487539 ATMINO43313 823 aaPredicted RBP13.3□□□□□ -0.28
CNN3-206ENST00000487539 MS4A3Q96HJ5 214 aa13.28□□□□□ -0.28
CNN3-206ENST00000487539 NPM1P06748 294 aaKnown RBP eCLIP13.27□□□□□ -0.29
CNN3-206ENST00000487539 SCUBE2Q9NQ36 999 aa13.22□□□□□ -0.29
CNN3-206ENST00000487539 MNX1P50219 401 aaPredicted RBP13.2□□□□□ -0.3
CNN3-206ENST00000487539 ATN1P54259 1190 aaPredicted RBP13.15□□□□□ -0.3
CNN3-206ENST00000487539 CDAN1Q8IWY9 1227 aa13.11□□□□□ -0.31
CNN3-206ENST00000487539 POTEFA5A3E0 1075 aa13.08□□□□□ -0.32
CNN3-206ENST00000487539 SPDYE4A6NLX3 237 aa13.06□□□□□ -0.32
CNN3-206ENST00000487539 TSPYL2Q9H2G4 693 aaPredicted RBP13.06□□□□□ -0.32
CNN3-206ENST00000487539 BMP2KQ9NSY1 1161 aaPredicted RBP13□□□□□ -0.33
CNN3-206ENST00000487539 CCDC61Q9Y6R9 512 aa12.98□□□□□ -0.33
CNN3-206ENST00000487539 KIF12Q96FN5 646 aa12.97□□□□□ -0.33
CNN3-206ENST00000487539 TRPC6Q9Y210 931 aa12.97□□□□□ -0.33
CNN3-206ENST00000487539 COLQQ9Y215 455 aaPredicted RBP12.94□□□□□ -0.34
CNN3-206ENST00000487539 SEC24BO95487 1268 aa12.92□□□□□ -0.34
CNN3-206ENST00000487539 TIE1P35590 1138 aa12.88□□□□□ -0.35
CNN3-206ENST00000487539 MAP3K13O43283 966 aa12.87□□□□□ -0.35
CNN3-206ENST00000487539 ST18O60284 1047 aa12.87□□□□□ -0.35
CNN3-206ENST00000487539 MMRN1Q13201 1228 aa12.84□□□□□ -0.35
CNN3-206ENST00000487539 TTLL13PA6NNM8 815 aa12.82□□□□□ -0.36
CNN3-206ENST00000487539 SLAIN1Q8ND83 568 aa12.82□□□□□ -0.36
CNN3-206ENST00000487539 EHMT2Q96KQ7 1210 aa12.82□□□□□ -0.36
CNN3-206ENST00000487539 SPNS2Q8IVW8 549 aa12.79□□□□□ -0.36
CNN3-206ENST00000487539 CSRNP3Q8WYN3 585 aa12.76□□□□□ -0.37
CNN3-206ENST00000487539 TRIM35Q9UPQ4 493 aa12.75□□□□□ -0.37
CNN3-206ENST00000487539 IER5LQ5T953 404 aa12.73□□□□□ -0.37
CNN3-206ENST00000487539 RASEFQ8IZ41 740 aa12.7□□□□□ -0.38
CNN3-206ENST00000487539 PCDHB13Q9Y5F0 798 aa12.63□□□□□ -0.39
CNN3-206ENST00000487539 TMEM121BQ9BXQ6 578 aaPredicted RBP12.62□□□□□ -0.39
CNN3-206ENST00000487539 PLCG2P16885 1265 aa12.61□□□□□ -0.39
CNN3-206ENST00000487539 MIER1Q8N108 512 aa12.6□□□□□ -0.39
CNN3-206ENST00000487539 MARVELD3Q96A59 401 aa12.6□□□□□ -0.39
CNN3-206ENST00000487539 PLEKHG5O94827 1062 aa12.59□□□□□ -0.39
CNN3-206ENST00000487539 SGIP1Q9BQI5 828 aa12.59□□□□□ -0.39
CNN3-206ENST00000487539 PROM2Q8N271 834 aa12.56□□□□□ -0.4
CNN3-206ENST00000487539 TMEM106CQ9BVX2 250 aa12.55□□□□□ -0.4
CNN3-206ENST00000487539 SNPHO15079 494 aa12.54□□□□□ -0.4
CNN3-206ENST00000487539 IFNL1Q8IU54 200 aa12.53□□□□□ -0.4
CNN3-206ENST00000487539 IRX5P78411 483 aaPredicted RBP12.52□□□□□ -0.41
CNN3-206ENST00000487539 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.47□□□□□ -0.41
CNN3-206ENST00000487539 OCEL1Q9H607 264 aa12.45□□□□□ -0.42
CNN3-206ENST00000487539 EMP3P54852 163 aa12.41□□□□□ -0.42
CNN3-206ENST00000487539 NUBP1P53384 320 aa12.39□□□□□ -0.43
CNN3-206ENST00000487539 KRTAP3-3Q9BYR6 98 aa12.39□□□□□ -0.43
CNN3-206ENST00000487539 KRTAP3-2Q9BYR7 98 aa12.39□□□□□ -0.43
CNN3-206ENST00000487539 PLCD3Q8N3E9 789 aa12.38□□□□□ -0.43
CNN3-206ENST00000487539 POTEB3A0JP26 581 aa12.37□□□□□ -0.43
CNN3-206ENST00000487539 POTEBQ6S5H4 581 aa12.37□□□□□ -0.43
CNN3-206ENST00000487539 HS3ST6Q96QI5 342 aa12.35□□□□□ -0.43
CNN3-206ENST00000487539 FAM205CA6NFA0 338 aa12.34□□□□□ -0.43
CNN3-206ENST00000487539 FAM212AQ96EL1 285 aa12.3□□□□□ -0.44
CNN3-206ENST00000487539 ZBTB47Q9UFB7 747 aaPredicted RBP12.28□□□□□ -0.44
CNN3-206ENST00000487539 C3orf67Q6ZVT6 689 aa12.26□□□□□ -0.45
CNN3-206ENST00000487539 PCDHB8Q9UN66 801 aa12.22□□□□□ -0.45
CNN3-206ENST00000487539 PDCD7Q8N8D1 485 aaKnown RBP12.21□□□□□ -0.45
CNN3-206ENST00000487539 PYGBP11216 843 aa12.2□□□□□ -0.46
CNN3-206ENST00000487539 L3MBTL3Q96JM7 780 aaPredicted RBP12.19□□□□□ -0.46
CNN3-206ENST00000487539 DCAF8Q5TAQ9 597 aa12.16□□□□□ -0.46
CNN3-206ENST00000487539 MKRN3Q13064 507 aaKnown RBP12.11□□□□□ -0.47
CNN3-206ENST00000487539 RNF166Q96A37 237 aaPredicted RBP12.11□□□□□ -0.47
CNN3-206ENST00000487539 GOLGA2Q08379 1002 aa12.09□□□□□ -0.47
CNN3-206ENST00000487539 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.08□□□□□ -0.487e-11■■■□□ 15.6
CNN3-206ENST00000487539 HOXB3P14651 431 aaPredicted RBP12.03□□□□□ -0.48
CNN3-206ENST00000487539 ERBB3P21860 1342 aa12.03□□□□□ -0.48
CNN3-206ENST00000487539 MYT1LQ9UL68 1186 aa12.02□□□□□ -0.49
CNN3-206ENST00000487539 HOXB1P14653 301 aaPredicted RBP12.01□□□□□ -0.49
CNN3-206ENST00000487539 ZNF710Q8N1W2 664 aa12□□□□□ -0.49
CNN3-206ENST00000487539 DPY19L2Q6NUT2 758 aa11.98□□□□□ -0.49
CNN3-206ENST00000487539 ZNF467Q7Z7K2 595 aaPredicted RBP11.95□□□□□ -0.5
CNN3-206ENST00000487539 VARS2Q5ST30 1063 aaKnown RBP11.93□□□□□ -0.5
CNN3-206ENST00000487539 G3V3G9 751 aa11.91□□□□□ -0.5
CNN3-206ENST00000487539 PSEN1P49768 467 aa11.91□□□□□ -0.5
CNN3-206ENST00000487539 ILDR1Q86SU0 546 aaPredicted RBP11.91□□□□□ -0.5
CNN3-206ENST00000487539 DOK7Q18PE1 504 aa11.9□□□□□ -0.5
CNN3-206ENST00000487539 BOLA1Q9Y3E2 137 aa11.9□□□□□ -0.5
CNN3-206ENST00000487539 ZNF687Q8N1G0 1237 aa11.83□□□□□ -0.52
CNN3-206ENST00000487539 RIMBP2O15034 1052 aa11.82□□□□□ -0.52
CNN3-206ENST00000487539 GSE1Q14687 1217 aa11.82□□□□□ -0.52
CNN3-206ENST00000487539 CHRM1P11229 460 aaPredicted RBP11.8□□□□□ -0.52
CNN3-206ENST00000487539 PTGER2P43116 358 aa11.79□□□□□ -0.52
CNN3-206ENST00000487539 CABP2Q9NPB3 220 aa11.78□□□□□ -0.52
CNN3-206ENST00000487539 ANKRD13DQ6ZTN6 518 aa11.77□□□□□ -0.53
CNN3-206ENST00000487539 PDAP1Q13442 181 aaKnown RBP11.76□□□□□ -0.53
CNN3-206ENST00000487539 KLHL34Q8N239 644 aa11.72□□□□□ -0.53
CNN3-206ENST00000487539 ZSWIM6Q9HCJ5 1215 aa11.71□□□□□ -0.53
CNN3-206ENST00000487539 GPR153Q6NV75 609 aa11.7□□□□□ -0.54
CNN3-206ENST00000487539 PLA2G2EQ9NZK7 142 aa11.67□□□□□ -0.54
CNN3-206ENST00000487539 FKBP8Q14318 412 aa11.65□□□□□ -0.54
CNN3-206ENST00000487539 TMEM92Q6UXU6 159 aa11.65□□□□□ -0.54
CNN3-206ENST00000487539 LSM11P83369 360 aaKnown RBP eCLIP11.61□□□□□ -0.55
CNN3-206ENST00000487539 ARSIQ5FYB1 569 aa11.61□□□□□ -0.55
CNN3-206ENST00000487539 FBXO3Q9UK99 471 aa11.6□□□□□ -0.55
CNN3-206ENST00000487539 MICALL2Q8IY33 904 aa11.57□□□□□ -0.56
CNN3-206ENST00000487539 ZNF316A6NFI3 1004 aaPredicted RBP11.56□□□□□ -0.56
CNN3-206ENST00000487539 EFCAB3Q8N7B9 438 aa11.56□□□□□ -0.56
CNN3-206ENST00000487539 KHSRPQ92945 711 aaKnown RBP eCLIP11.55□□□□□ -0.56
CNN3-206ENST00000487539 HCSTQ9UBK5 93 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms