RNA–Protein interactions for RNA: ENST00000486016.1

GCFC2-209, Transcript of GC-rich sequence DNA-binding factor 2, humanhuman

TSL 3

Gene GCFC2, Length 595 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCFC2-209ENST00000486016 METRNQ9UJH8 293 aa14.68□□□□□ -0.06
GCFC2-209ENST00000486016 ASTLQ6HA08 431 aaPredicted RBP14.67□□□□□ -0.06
GCFC2-209ENST00000486016 ATMINO43313 823 aaPredicted RBP14.65□□□□□ -0.06
GCFC2-209ENST00000486016 POTEGQ6S5H5 508 aa14.64□□□□□ -0.07
GCFC2-209ENST00000486016 TSPYL2Q9H2G4 693 aaPredicted RBP14.64□□□□□ -0.07
GCFC2-209ENST00000486016 SLC39A7Q92504 469 aa14.62□□□□□ -0.07
GCFC2-209ENST00000486016 C7P10643 843 aa14.61□□□□□ -0.07
GCFC2-209ENST00000486016 POTEJP0CG39 1038 aa14.59□□□□□ -0.07
GCFC2-209ENST00000486016 CCDC61Q9Y6R9 512 aa14.54□□□□□ -0.08
GCFC2-209ENST00000486016 ATN1P54259 1190 aaPredicted RBP14.53□□□□□ -0.08
GCFC2-209ENST00000486016 MAMSTRQ6ZN01 415 aa14.52□□□□□ -0.09
GCFC2-209ENST00000486016 KIF12Q96FN5 646 aa14.48□□□□□ -0.09
GCFC2-209ENST00000486016 PLEKHG5O94827 1062 aa14.44□□□□□ -0.1
GCFC2-209ENST00000486016 SCUBE2Q9NQ36 999 aa14.44□□□□□ -0.1
GCFC2-209ENST00000486016 MIER1Q8N108 512 aa14.43□□□□□ -0.1
GCFC2-209ENST00000486016 FAM163AQ96GL9 167 aaPredicted RBP14.43□□□□□ -0.1
GCFC2-209ENST00000486016 TRPC6Q9Y210 931 aa14.43□□□□□ -0.1
GCFC2-209ENST00000486016 BMP2KQ9NSY1 1161 aaPredicted RBP14.42□□□□□ -0.1
GCFC2-209ENST00000486016 PCDH10Q9P2E7 1040 aa14.41□□□□□ -0.1
GCFC2-209ENST00000486016 MAP3K13O43283 966 aa14.39□□□□□ -0.11
GCFC2-209ENST00000486016 POTEFA5A3E0 1075 aa14.38□□□□□ -0.11
GCFC2-209ENST00000486016 LCE2DQ5TA82 110 aaPredicted RBP14.38□□□□□ -0.11
GCFC2-209ENST00000486016 TIE1P35590 1138 aa14.37□□□□□ -0.11
GCFC2-209ENST00000486016 RASEFQ8IZ41 740 aa14.35□□□□□ -0.11
GCFC2-209ENST00000486016 PLCD3Q8N3E9 789 aa14.31□□□□□ -0.12
GCFC2-209ENST00000486016 FBXO3Q9UK99 471 aa14.29□□□□□ -0.12
GCFC2-209ENST00000486016 SEC24BO95487 1268 aa14.28□□□□□ -0.12
GCFC2-209ENST00000486016 TTLL13PA6NNM8 815 aa14.27□□□□□ -0.13
GCFC2-209ENST00000486016 COLQQ9Y215 455 aaPredicted RBP14.27□□□□□ -0.13
GCFC2-209ENST00000486016 SGIP1Q9BQI5 828 aa14.24□□□□□ -0.13
GCFC2-209ENST00000486016 NUBP1P53384 320 aa14.22□□□□□ -0.13
GCFC2-209ENST00000486016 IER5LQ5T953 404 aa14.19□□□□□ -0.14
GCFC2-209ENST00000486016 ZBTB47Q9UFB7 747 aaPredicted RBP14.19□□□□□ -0.14
GCFC2-209ENST00000486016 TRIM35Q9UPQ4 493 aa14.19□□□□□ -0.14
GCFC2-209ENST00000486016 PCDHB13Q9Y5F0 798 aa14.19□□□□□ -0.14
GCFC2-209ENST00000486016 VASPP50552 380 aaPredicted RBP14.15□□□□□ -0.14
GCFC2-209ENST00000486016 IFNL1Q8IU54 200 aa14.09□□□□□ -0.15
GCFC2-209ENST00000486016 CDAN1Q8IWY9 1227 aa14.09□□□□□ -0.15
GCFC2-209ENST00000486016 SLAIN1Q8ND83 568 aa14.07□□□□□ -0.16
GCFC2-209ENST00000486016 FAM212AQ96EL1 285 aa14.07□□□□□ -0.16
GCFC2-209ENST00000486016 TMEM106CQ9BVX2 250 aa14.06□□□□□ -0.16
GCFC2-209ENST00000486016 ST18O60284 1047 aa14.01□□□□□ -0.17
GCFC2-209ENST00000486016 PLCG2P16885 1265 aa14□□□□□ -0.17
GCFC2-209ENST00000486016 IFNLR1Q8IU57 520 aaPredicted RBP13.97□□□□□ -0.17
GCFC2-209ENST00000486016 IRX5P78411 483 aaPredicted RBP13.95□□□□□ -0.18
GCFC2-209ENST00000486016 KLHL34Q8N239 644 aa13.94□□□□□ -0.18
GCFC2-209ENST00000486016 DCAF8Q5TAQ9 597 aa13.92□□□□□ -0.18
GCFC2-209ENST00000486016 PYGBP11216 843 aa13.88□□□□□ -0.19
GCFC2-209ENST00000486016 OCEL1Q9H607 264 aa13.87□□□□□ -0.19
GCFC2-209ENST00000486016 GSE1Q14687 1217 aa13.83□□□□□ -0.2
GCFC2-209ENST00000486016 SPOCK2Q92563 424 aa13.83□□□□□ -0.2
GCFC2-209ENST00000486016 PCDHB8Q9UN66 801 aa13.83□□□□□ -0.2
GCFC2-209ENST00000486016 TMEM121BQ9BXQ6 578 aaPredicted RBP13.81□□□□□ -0.2
GCFC2-209ENST00000486016 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.81□□□□□ -0.2
GCFC2-209ENST00000486016 SNPHO15079 494 aa13.79□□□□□ -0.2
GCFC2-209ENST00000486016 CHRM1P11229 460 aaPredicted RBP13.77□□□□□ -0.21
GCFC2-209ENST00000486016 MARVELD3Q96A59 401 aa13.76□□□□□ -0.21
GCFC2-209ENST00000486016 MMRN1Q13201 1228 aa13.74□□□□□ -0.21
GCFC2-209ENST00000486016 SPNS2Q8IVW8 549 aa13.74□□□□□ -0.21
GCFC2-209ENST00000486016 ZNF467Q7Z7K2 595 aaPredicted RBP13.69□□□□□ -0.22
GCFC2-209ENST00000486016 PDCD7Q8N8D1 485 aaKnown RBP13.67□□□□□ -0.22
GCFC2-209ENST00000486016 GOLGA2Q08379 1002 aa13.66□□□□□ -0.22
GCFC2-209ENST00000486016 C3orf67Q6ZVT6 689 aa13.65□□□□□ -0.22
GCFC2-209ENST00000486016 CIZ1Q9ULV3 898 aaPredicted RBP13.65□□□□□ -0.22
GCFC2-209ENST00000486016 MKRN3Q13064 507 aaKnown RBP13.64□□□□□ -0.23
GCFC2-209ENST00000486016 L3MBTL3Q96JM7 780 aaPredicted RBP13.64□□□□□ -0.23
GCFC2-209ENST00000486016 EMP3P54852 163 aa13.6□□□□□ -0.23
GCFC2-209ENST00000486016 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.58□□□□□ -0.249e-7■■■■■ 30.5
GCFC2-209ENST00000486016 PSEN1P49768 467 aa13.55□□□□□ -0.24
GCFC2-209ENST00000486016 POTEB3A0JP26 581 aa13.52□□□□□ -0.25
GCFC2-209ENST00000486016 FAM205CA6NFA0 338 aa13.52□□□□□ -0.25
GCFC2-209ENST00000486016 POTEBQ6S5H4 581 aa13.52□□□□□ -0.25
GCFC2-209ENST00000486016 TRIM41Q8WV44 630 aa13.52□□□□□ -0.25
GCFC2-209ENST00000486016 HS3ST6Q96QI5 342 aa13.52□□□□□ -0.25
GCFC2-209ENST00000486016 PDAP1Q13442 181 aaKnown RBP13.5□□□□□ -0.25
GCFC2-209ENST00000486016 ILDR1Q86SU0 546 aaPredicted RBP13.5□□□□□ -0.25
GCFC2-209ENST00000486016 KRTAP3-3Q9BYR6 98 aa13.48□□□□□ -0.25
GCFC2-209ENST00000486016 KRTAP3-2Q9BYR7 98 aa13.48□□□□□ -0.25
GCFC2-209ENST00000486016 DPY19L2Q6NUT2 758 aa13.47□□□□□ -0.25
GCFC2-209ENST00000486016 RNF25Q96BH1 459 aaPredicted RBP13.44□□□□□ -0.26
GCFC2-209ENST00000486016 G3V3G9 751 aa13.4□□□□□ -0.26
GCFC2-209ENST00000486016 CABP2Q9NPB3 220 aa13.4□□□□□ -0.26
GCFC2-209ENST00000486016 BOLA1Q9Y3E2 137 aa13.38□□□□□ -0.27
GCFC2-209ENST00000486016 RIOK3O14730 519 aaKnown RBP13.35□□□□□ -0.27
GCFC2-209ENST00000486016 HOXB3P14651 431 aaPredicted RBP13.35□□□□□ -0.27
GCFC2-209ENST00000486016 ZNF710Q8N1W2 664 aa13.32□□□□□ -0.28
GCFC2-209ENST00000486016 PKD2Q13563 968 aa13.31□□□□□ -0.28
GCFC2-209ENST00000486016 HOXB1P14653 301 aaPredicted RBP13.29□□□□□ -0.28
GCFC2-209ENST00000486016 VGFO15240 615 aaPredicted RBP13.27□□□□□ -0.29
GCFC2-209ENST00000486016 ERBB3P21860 1342 aa13.27□□□□□ -0.29
GCFC2-209ENST00000486016 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.26□□□□□ -0.29
GCFC2-209ENST00000486016 DOK7Q18PE1 504 aa13.26□□□□□ -0.29
GCFC2-209ENST00000486016 ZFP91Q96JP5 570 aaPredicted RBP13.26□□□□□ -0.29
GCFC2-209ENST00000486016 EFCAB3Q8N7B9 438 aa13.25□□□□□ -0.29
GCFC2-209ENST00000486016 ECM2O94769 699 aaPredicted RBP13.21□□□□□ -0.29
GCFC2-209ENST00000486016 RIMBP2O15034 1052 aa13.2□□□□□ -0.3
GCFC2-209ENST00000486016 RGL2O15211 777 aa13.17□□□□□ -0.3
GCFC2-209ENST00000486016 VARS2Q5ST30 1063 aaKnown RBP13.17□□□□□ -0.3
GCFC2-209ENST00000486016 RNF166Q96A37 237 aaPredicted RBP13.16□□□□□ -0.3
GCFC2-209ENST00000486016 SOX12O15370 315 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms