RNA–Protein interactions for RNA: ENST00000484822.1

RXRA-203, Transcript of retinoid X receptor alpha, humanhuman

TSL 2

Gene RXRA, Length 5,215 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RXRA-203ENST00000484822 ERCC6Q03468 1493 aa20.35■□□□□ 0.85
RXRA-203ENST00000484822 MROH2BQ7Z745 1585 aa20.34■□□□□ 0.85
RXRA-203ENST00000484822 TONSLQ96HA7 1378 aa20.34■□□□□ 0.85
RXRA-203ENST00000484822 CEP164Q9UPV0 1460 aa20.29■□□□□ 0.84
RXRA-203ENST00000484822 CEP162Q5TB80 1403 aa20.27■□□□□ 0.84
RXRA-203ENST00000484822 TSPY4P0CV99 314 aa20.26■□□□□ 0.83
RXRA-203ENST00000484822 TSPY10P0CW01 314 aa20.26■□□□□ 0.83
RXRA-203ENST00000484822 MRS2Q9HD23 443 aa20.25■□□□□ 0.83
RXRA-203ENST00000484822 TNIKQ9UKE5 1360 aa20.24■□□□□ 0.83
RXRA-203ENST00000484822 TMC1Q8TDI8 760 aa20.23■□□□□ 0.83
RXRA-203ENST00000484822 RTN4Q9NQC3 1192 aaKnown RBP20.22■□□□□ 0.83
RXRA-203ENST00000484822 HIRIP3Q9BW71 556 aaPredicted RBP20.22■□□□□ 0.83
RXRA-203ENST00000484822 CCDC88BA6NC98 1476 aa20.21■□□□□ 0.83
RXRA-203ENST00000484822 CHIC2Q9UKJ5 165 aa20.2■□□□□ 0.82
RXRA-203ENST00000484822 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.19■□□□□ 0.82
RXRA-203ENST00000484822 PLEKHD1A6NEE1 506 aa20.18■□□□□ 0.82
RXRA-203ENST00000484822 PDS5BQ9NTI5 1447 aa20.14■□□□□ 0.81
RXRA-203ENST00000484822 PLPPR3Q6T4P5 718 aa20.11■□□□□ 0.81
RXRA-203ENST00000484822 CUX2O14529 1486 aa20.11■□□□□ 0.81
RXRA-203ENST00000484822 TOP2AP11388 1531 aaKnown RBP20.11■□□□□ 0.81
RXRA-203ENST00000484822 CHGAP10645 457 aaKnown RBP20.1■□□□□ 0.81
RXRA-203ENST00000484822 TRIM44Q96DX7 344 aaPredicted RBP20.09■□□□□ 0.81
RXRA-203ENST00000484822 CARMIL1Q5VZK9 1371 aa20.08■□□□□ 0.81
RXRA-203ENST00000484822 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.08■□□□□ 0.81
RXRA-203ENST00000484822 DDRGK1Q96HY6 314 aa20.06■□□□□ 0.8
RXRA-203ENST00000484822 KCNH8Q96L42 1107 aa20.05■□□□□ 0.8
RXRA-203ENST00000484822 SUPT16HQ9Y5B9 1047 aaKnown RBP20.05■□□□□ 0.8
RXRA-203ENST00000484822 LAS1LQ9Y4W2 734 aaKnown RBP20.02■□□□□ 0.8
RXRA-203ENST00000484822 WIZO95785 1651 aa20.02■□□□□ 0.79
RXRA-203ENST00000484822 SENP3-EIF4A1A0A087X0R7 540 aa20.01■□□□□ 0.79
RXRA-203ENST00000484822 ATAD2BQ9ULI0 1458 aa20.01■□□□□ 0.79
RXRA-203ENST00000484822 SOGA1O94964 1423 aa20.01■□□□□ 0.79
RXRA-203ENST00000484822 ERICH6BQ5W0A0 696 aa20.01■□□□□ 0.79
RXRA-203ENST00000484822 WDR43Q15061 677 aaKnown RBP eCLIP20■□□□□ 0.79
RXRA-203ENST00000484822 BECN1Q14457 450 aa19.99■□□□□ 0.79
RXRA-203ENST00000484822 CADPSQ9ULU8 1353 aa19.99■□□□□ 0.79
RXRA-203ENST00000484822 FHAD1B1AJZ9 1412 aa19.99■□□□□ 0.79
RXRA-203ENST00000484822 CFDP1Q9UEE9 299 aaPredicted RBP19.98■□□□□ 0.79
RXRA-203ENST00000484822 NAP1L5Q96NT1 182 aaPredicted RBP19.97■□□□□ 0.79
RXRA-203ENST00000484822 SMARCA4P51532 1647 aa19.97■□□□□ 0.79
RXRA-203ENST00000484822 PPM1GO15355 546 aaPredicted RBP19.97■□□□□ 0.79
RXRA-203ENST00000484822 RRP7BPQ9NSQ0 103 aa19.96■□□□□ 0.79
RXRA-203ENST00000484822 NOP58Q9Y2X3 529 aaKnown RBP19.95■□□□□ 0.78
RXRA-203ENST00000484822 ABCC8Q09428 1581 aa19.94■□□□□ 0.78
RXRA-203ENST00000484822 TNNT2P45379 298 aaPredicted RBP19.93■□□□□ 0.78
RXRA-203ENST00000484822 EIF4G1Q04637 1599 aaKnown RBP19.9■□□□□ 0.78
RXRA-203ENST00000484822 DEKP35659 375 aaKnown RBP19.89■□□□□ 0.78
RXRA-203ENST00000484822 KDM2AQ9Y2K7 1162 aa19.89■□□□□ 0.77
RXRA-203ENST00000484822 EIF4G2P78344 907 aaKnown RBP eCLIP19.88■□□□□ 0.771e-6■■■■■ 37.8
RXRA-203ENST00000484822 NCLP19338 710 aaKnown RBP19.88■□□□□ 0.77
RXRA-203ENST00000484822 GOLGA6L22H0YM25 854 aa19.86■□□□□ 0.77
RXRA-203ENST00000484822 PPP4R2Q9NY27 417 aa19.85■□□□□ 0.77
RXRA-203ENST00000484822 TDRD9Q8NDG6 1382 aaKnown RBP19.84■□□□□ 0.77
RXRA-203ENST00000484822 PTMAP06454 111 aaKnown RBP19.83■□□□□ 0.77
RXRA-203ENST00000484822 DNTTIP2Q5QJE6 756 aaKnown RBP19.83■□□□□ 0.77
RXRA-203ENST00000484822 ARID4BQ4LE39 1312 aaPredicted RBP19.83■□□□□ 0.76
RXRA-203ENST00000484822 PPP1R15AO75807 674 aaPredicted RBP19.82■□□□□ 0.76
RXRA-203ENST00000484822 B4GALNT3Q6L9W6 998 aa19.81■□□□□ 0.76
RXRA-203ENST00000484822 RBM19Q9Y4C8 960 aaKnown RBP19.81■□□□□ 0.76
RXRA-203ENST00000484822 CCNB3Q8WWL7 1395 aa19.8■□□□□ 0.76
RXRA-203ENST00000484822 CARMIL2Q6F5E8 1435 aa19.8■□□□□ 0.76
RXRA-203ENST00000484822 MYH16Q9H6N6 1097 aa19.79■□□□□ 0.76
RXRA-203ENST00000484822 C14orf37Q86TY3 774 aa19.78■□□□□ 0.76
RXRA-203ENST00000484822 VPS8Q8N3P4 1428 aa19.76■□□□□ 0.75
RXRA-203ENST00000484822 RGS3P49796 1198 aa19.75■□□□□ 0.75
RXRA-203ENST00000484822 TPRNQ4KMQ1 711 aa19.73■□□□□ 0.75
RXRA-203ENST00000484822 FMN1Q68DA7 1419 aa19.7■□□□□ 0.74
RXRA-203ENST00000484822 FANCD2Q9BXW9 1451 aa19.69■□□□□ 0.74
RXRA-203ENST00000484822 TRHP20396 242 aaPredicted RBP19.69■□□□□ 0.74
RXRA-203ENST00000484822 HAP1P54257 671 aaPredicted RBP19.69■□□□□ 0.74
RXRA-203ENST00000484822 RAPGEF2Q9Y4G8 1499 aa19.68■□□□□ 0.74
RXRA-203ENST00000484822 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.66■□□□□ 0.74
RXRA-203ENST00000484822 NCAPD3P42695 1498 aa19.64■□□□□ 0.73
RXRA-203ENST00000484822 RGL3Q3MIN7 710 aa19.63■□□□□ 0.73
RXRA-203ENST00000484822 PLCB2Q00722 1185 aa19.63■□□□□ 0.73
RXRA-203ENST00000484822 CDK11BP21127 795 aaKnown RBP19.63■□□□□ 0.73
RXRA-203ENST00000484822 ARHGAP35Q9NRY4 1499 aa19.62■□□□□ 0.73
RXRA-203ENST00000484822 A0A0G2JS52 829 aa19.61■□□□□ 0.73
RXRA-203ENST00000484822 TSHZ2Q9NRE2 1034 aa19.59■□□□□ 0.73
RXRA-203ENST00000484822 SIN3AQ96ST3 1273 aa19.58■□□□□ 0.73
RXRA-203ENST00000484822 AMER1Q5JTC6 1135 aaPredicted RBP19.57■□□□□ 0.72
RXRA-203ENST00000484822 CDCA8Q53HL2 280 aa19.55■□□□□ 0.72
RXRA-203ENST00000484822 FTSJ3Q8IY81 847 aaKnown RBP19.55■□□□□ 0.72
RXRA-203ENST00000484822 NEUROD2Q15784 382 aa19.55■□□□□ 0.72
RXRA-203ENST00000484822 HDGFP51858 240 aaKnown RBP19.54■□□□□ 0.72
RXRA-203ENST00000484822 ZRSR1Q15695 479 aaKnown RBP19.54■□□□□ 0.72
RXRA-203ENST00000484822 KANK1Q14678 1352 aa19.53■□□□□ 0.72
RXRA-203ENST00000484822 FRAT1Q92837 279 aaPredicted RBP19.52■□□□□ 0.72
RXRA-203ENST00000484822 L1TD1Q5T7N2 865 aaKnown RBP19.52■□□□□ 0.72
RXRA-203ENST00000484822 KANK4Q5T7N3 995 aaPredicted RBP19.52■□□□□ 0.72
RXRA-203ENST00000484822 HSP90AB1P08238 724 aaKnown RBP19.52■□□□□ 0.71
RXRA-203ENST00000484822 CARD11Q9BXL7 1154 aa19.5■□□□□ 0.71
RXRA-203ENST00000484822 SPRYD3Q8NCJ5 442 aa19.49■□□□□ 0.71
RXRA-203ENST00000484822 JPH4Q96JJ6 628 aa19.49■□□□□ 0.71
RXRA-203ENST00000484822 MSNP26038 577 aaKnown RBP19.49■□□□□ 0.71
RXRA-203ENST00000484822 EFCAB2Q5VUJ9 269 aa19.48■□□□□ 0.71
RXRA-203ENST00000484822 KNSTRNQ9Y448 316 aa19.48■□□□□ 0.71
RXRA-203ENST00000484822 CASC1Q6TDU7 716 aa19.48■□□□□ 0.71
RXRA-203ENST00000484822 SETD5Q9C0A6 1442 aa19.48■□□□□ 0.71
RXRA-203ENST00000484822 TIMELESSQ9UNS1 1208 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms