RNA–Protein interactions for RNA: ENST00000483117.1

LAPTM4A-202, Transcript of lysosomal protein transmembrane 4 alpha, humanhuman

TSL 2

Gene LAPTM4A, Length 487 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAPTM4A-202ENST00000483117 PELP1Q8IZL8 1130 aaKnown RBP11.22□□□□□ -0.61
LAPTM4A-202ENST00000483117 ZRANB1Q9UGI0 708 aa11.21□□□□□ -0.61
LAPTM4A-202ENST00000483117 MMRN1Q13201 1228 aa11.18□□□□□ -0.62
LAPTM4A-202ENST00000483117 MNX1P50219 401 aaPredicted RBP11.15□□□□□ -0.62
LAPTM4A-202ENST00000483117 METRNQ9UJH8 293 aa11.12□□□□□ -0.63
LAPTM4A-202ENST00000483117 NPM1P06748 294 aaKnown RBP eCLIP11.08□□□□□ -0.64
LAPTM4A-202ENST00000483117 MIER1Q8N108 512 aa11.08□□□□□ -0.64
LAPTM4A-202ENST00000483117 SCUBE2Q9NQ36 999 aa11.08□□□□□ -0.64
LAPTM4A-202ENST00000483117 SPNS2Q8IVW8 549 aa11.07□□□□□ -0.64
LAPTM4A-202ENST00000483117 C7P10643 843 aa11.05□□□□□ -0.64
LAPTM4A-202ENST00000483117 SLC39A7Q92504 469 aa11.04□□□□□ -0.64
LAPTM4A-202ENST00000483117 PAK3O75914 559 aaPredicted RBP11.01□□□□□ -0.65
LAPTM4A-202ENST00000483117 PLEKHG5O94827 1062 aa11.01□□□□□ -0.65
LAPTM4A-202ENST00000483117 PLCD3Q8N3E9 789 aa11.01□□□□□ -0.65
LAPTM4A-202ENST00000483117 PHF12Q96QT6 1004 aa10.97□□□□□ -0.65
LAPTM4A-202ENST00000483117 ASTLQ6HA08 431 aaPredicted RBP10.96□□□□□ -0.65
LAPTM4A-202ENST00000483117 TSPYL2Q9H2G4 693 aaPredicted RBP10.95□□□□□ -0.66
LAPTM4A-202ENST00000483117 FBXO3Q9UK99 471 aa10.94□□□□□ -0.66
LAPTM4A-202ENST00000483117 ATMINO43313 823 aaPredicted RBP10.91□□□□□ -0.66
LAPTM4A-202ENST00000483117 RASEFQ8IZ41 740 aa10.9□□□□□ -0.66
LAPTM4A-202ENST00000483117 ZBTB47Q9UFB7 747 aaPredicted RBP10.86□□□□□ -0.67
LAPTM4A-202ENST00000483117 CCDC61Q9Y6R9 512 aa10.86□□□□□ -0.67
LAPTM4A-202ENST00000483117 VASPP50552 380 aaPredicted RBP10.84□□□□□ -0.67
LAPTM4A-202ENST00000483117 NUBP1P53384 320 aa10.84□□□□□ -0.67
LAPTM4A-202ENST00000483117 ST18O60284 1047 aa10.83□□□□□ -0.68
LAPTM4A-202ENST00000483117 MS4A3Q96HJ5 214 aa10.82□□□□□ -0.68
LAPTM4A-202ENST00000483117 POTEFA5A3E0 1075 aa10.78□□□□□ -0.68
LAPTM4A-202ENST00000483117 KIF12Q96FN5 646 aa10.78□□□□□ -0.68
LAPTM4A-202ENST00000483117 KLHL34Q8N239 644 aa10.76□□□□□ -0.69
LAPTM4A-202ENST00000483117 MAP3K13O43283 966 aa10.74□□□□□ -0.69
LAPTM4A-202ENST00000483117 FAM212AQ96EL1 285 aa10.74□□□□□ -0.69
LAPTM4A-202ENST00000483117 ATN1P54259 1190 aaPredicted RBP10.71□□□□□ -0.69
LAPTM4A-202ENST00000483117 DCAF8Q5TAQ9 597 aa10.7□□□□□ -0.7
LAPTM4A-202ENST00000483117 TRPC6Q9Y210 931 aa10.69□□□□□ -0.7
LAPTM4A-202ENST00000483117 IFNLR1Q8IU57 520 aaPredicted RBP10.68□□□□□ -0.7
LAPTM4A-202ENST00000483117 PCDHB13Q9Y5F0 798 aa10.66□□□□□ -0.7
LAPTM4A-202ENST00000483117 PYGBP11216 843 aa10.63□□□□□ -0.71
LAPTM4A-202ENST00000483117 BMP2KQ9NSY1 1161 aaPredicted RBP10.62□□□□□ -0.71
LAPTM4A-202ENST00000483117 IFNL1Q8IU54 200 aa10.61□□□□□ -0.71
LAPTM4A-202ENST00000483117 SGIP1Q9BQI5 828 aa10.61□□□□□ -0.71
LAPTM4A-202ENST00000483117 TIE1P35590 1138 aa10.59□□□□□ -0.71
LAPTM4A-202ENST00000483117 SPOCK2Q92563 424 aa10.59□□□□□ -0.71
LAPTM4A-202ENST00000483117 GSE1Q14687 1217 aa10.58□□□□□ -0.72
LAPTM4A-202ENST00000483117 SLAIN1Q8ND83 568 aa10.58□□□□□ -0.72
LAPTM4A-202ENST00000483117 TMEM121BQ9BXQ6 578 aaPredicted RBP10.57□□□□□ -0.72
LAPTM4A-202ENST00000483117 TTLL13PA6NNM8 815 aa10.56□□□□□ -0.72
LAPTM4A-202ENST00000483117 COLQQ9Y215 455 aaPredicted RBP10.54□□□□□ -0.72
LAPTM4A-202ENST00000483117 PCDHB8Q9UN66 801 aa10.53□□□□□ -0.72
LAPTM4A-202ENST00000483117 CIZ1Q9ULV3 898 aaPredicted RBP10.52□□□□□ -0.73
LAPTM4A-202ENST00000483117 TMEM106CQ9BVX2 250 aa10.5□□□□□ -0.73
LAPTM4A-202ENST00000483117 TRIM35Q9UPQ4 493 aa10.5□□□□□ -0.73
LAPTM4A-202ENST00000483117 SEC24BO95487 1268 aa10.49□□□□□ -0.73
LAPTM4A-202ENST00000483117 MARVELD3Q96A59 401 aa10.49□□□□□ -0.73
LAPTM4A-202ENST00000483117 KRTAP3-3Q9BYR6 98 aa10.47□□□□□ -0.73
LAPTM4A-202ENST00000483117 KRTAP3-2Q9BYR7 98 aa10.47□□□□□ -0.73
LAPTM4A-202ENST00000483117 CHRM1P11229 460 aaPredicted RBP10.46□□□□□ -0.73
LAPTM4A-202ENST00000483117 ZNF467Q7Z7K2 595 aaPredicted RBP10.43□□□□□ -0.74
LAPTM4A-202ENST00000483117 IER5LQ5T953 404 aa10.39□□□□□ -0.75
LAPTM4A-202ENST00000483117 SNPHO15079 494 aa10.36□□□□□ -0.75
LAPTM4A-202ENST00000483117 PSEN1P49768 467 aa10.36□□□□□ -0.75
LAPTM4A-202ENST00000483117 IRX5P78411 483 aaPredicted RBP10.33□□□□□ -0.76
LAPTM4A-202ENST00000483117 POTEB3A0JP26 581 aa10.32□□□□□ -0.76
LAPTM4A-202ENST00000483117 PLCG2P16885 1265 aa10.32□□□□□ -0.76
LAPTM4A-202ENST00000483117 PDAP1Q13442 181 aaKnown RBP10.32□□□□□ -0.76
LAPTM4A-202ENST00000483117 POTEBQ6S5H4 581 aa10.32□□□□□ -0.76
LAPTM4A-202ENST00000483117 TRIM41Q8WV44 630 aa10.32□□□□□ -0.76
LAPTM4A-202ENST00000483117 EMP3P54852 163 aa10.29□□□□□ -0.76
LAPTM4A-202ENST00000483117 HS3ST6Q96QI5 342 aa10.29□□□□□ -0.76
LAPTM4A-202ENST00000483117 GOLGA2Q08379 1002 aa10.28□□□□□ -0.76
LAPTM4A-202ENST00000483117 OCEL1Q9H607 264 aa10.28□□□□□ -0.76
LAPTM4A-202ENST00000483117 MKRN3Q13064 507 aaKnown RBP10.27□□□□□ -0.77
LAPTM4A-202ENST00000483117 RNF166Q96A37 237 aaPredicted RBP10.27□□□□□ -0.77
LAPTM4A-202ENST00000483117 RNF25Q96BH1 459 aaPredicted RBP10.27□□□□□ -0.77
LAPTM4A-202ENST00000483117 CABP2Q9NPB3 220 aa10.25□□□□□ -0.77
LAPTM4A-202ENST00000483117 FAM205CA6NFA0 338 aa10.22□□□□□ -0.77
LAPTM4A-202ENST00000483117 RIOK3O14730 519 aaKnown RBP10.22□□□□□ -0.77
LAPTM4A-202ENST00000483117 PDCD7Q8N8D1 485 aaKnown RBP10.22□□□□□ -0.77
LAPTM4A-202ENST00000483117 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.21□□□□□ -0.77
LAPTM4A-202ENST00000483117 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.17□□□□□ -0.78
LAPTM4A-202ENST00000483117 ECM2O94769 699 aaPredicted RBP10.17□□□□□ -0.78
LAPTM4A-202ENST00000483117 PKD2Q13563 968 aa10.17□□□□□ -0.78
LAPTM4A-202ENST00000483117 ZFP91Q96JP5 570 aaPredicted RBP10.17□□□□□ -0.78
LAPTM4A-202ENST00000483117 VGFO15240 615 aaPredicted RBP10.16□□□□□ -0.78
LAPTM4A-202ENST00000483117 DPY19L2Q6NUT2 758 aa10.15□□□□□ -0.78
LAPTM4A-202ENST00000483117 EFCAB3Q8N7B9 438 aa10.15□□□□□ -0.78
LAPTM4A-202ENST00000483117 ILDR1Q86SU0 546 aaPredicted RBP10.14□□□□□ -0.79
LAPTM4A-202ENST00000483117 L3MBTL3Q96JM7 780 aaPredicted RBP10.11□□□□□ -0.79
LAPTM4A-202ENST00000483117 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.11□□□□□ -0.79
LAPTM4A-202ENST00000483117 RGL2O15211 777 aa10.1□□□□□ -0.79
LAPTM4A-202ENST00000483117 MYT1LQ9UL68 1186 aa10.09□□□□□ -0.79
LAPTM4A-202ENST00000483117 C3orf67Q6ZVT6 689 aa10.07□□□□□ -0.8
LAPTM4A-202ENST00000483117 BCL11BQ9C0K0 894 aaPredicted RBP10.07□□□□□ -0.8
LAPTM4A-202ENST00000483117 TAOK2Q9UL54 1235 aa10.05□□□□□ -0.8
LAPTM4A-202ENST00000483117 STK24Q9Y6E0 443 aa10.05□□□□□ -0.8
LAPTM4A-202ENST00000483117 PHF8Q9UPP1 1060 aa10.04□□□□□ -0.8
LAPTM4A-202ENST00000483117 BOLA1Q9Y3E2 137 aa10.04□□□□□ -0.8
LAPTM4A-202ENST00000483117 STK25O00506 426 aa10.03□□□□□ -0.8
LAPTM4A-202ENST00000483117 SOX12O15370 315 aa10.03□□□□□ -0.8
LAPTM4A-202ENST00000483117 G3V3G9 751 aa10.02□□□□□ -0.81
LAPTM4A-202ENST00000483117 MS4A4AQ96JQ5 239 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms