RNA–Protein interactions for RNA: ENST00000481786.1

USH2A-204, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 626 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-204ENST00000481786 ATMINO43313 823 aaPredicted RBP8.65□□□□□ -1.02
USH2A-204ENST00000481786 ASTLQ6HA08 431 aaPredicted RBP8.64□□□□□ -1.03
USH2A-204ENST00000481786 NPM1P06748 294 aaKnown RBP eCLIP8.6□□□□□ -1.03
USH2A-204ENST00000481786 FAM163AQ96GL9 167 aaPredicted RBP8.59□□□□□ -1.03
USH2A-204ENST00000481786 C7P10643 843 aa8.58□□□□□ -1.04
USH2A-204ENST00000481786 ATN1P54259 1190 aaPredicted RBP8.58□□□□□ -1.04
USH2A-204ENST00000481786 SLC39A7Q92504 469 aa8.58□□□□□ -1.04
USH2A-204ENST00000481786 POTEFA5A3E0 1075 aa8.57□□□□□ -1.04
USH2A-204ENST00000481786 TSPYL2Q9H2G4 693 aaPredicted RBP8.57□□□□□ -1.04
USH2A-204ENST00000481786 TRPC6Q9Y210 931 aa8.56□□□□□ -1.04
USH2A-204ENST00000481786 PCDH10Q9P2E7 1040 aa8.52□□□□□ -1.05
USH2A-204ENST00000481786 CCDC61Q9Y6R9 512 aa8.51□□□□□ -1.05
USH2A-204ENST00000481786 MAMSTRQ6ZN01 415 aa8.5□□□□□ -1.05
USH2A-204ENST00000481786 KIF12Q96FN5 646 aa8.49□□□□□ -1.05
USH2A-204ENST00000481786 BMP2KQ9NSY1 1161 aaPredicted RBP8.49□□□□□ -1.05
USH2A-204ENST00000481786 SCUBE2Q9NQ36 999 aa8.48□□□□□ -1.05
USH2A-204ENST00000481786 COLQQ9Y215 455 aaPredicted RBP8.46□□□□□ -1.06
USH2A-204ENST00000481786 MAP3K13O43283 966 aa8.44□□□□□ -1.06
USH2A-204ENST00000481786 CDAN1Q8IWY9 1227 aa8.4□□□□□ -1.06
USH2A-204ENST00000481786 RASEFQ8IZ41 740 aa8.4□□□□□ -1.06
USH2A-204ENST00000481786 EHMT2Q96KQ7 1210 aa8.39□□□□□ -1.07
USH2A-204ENST00000481786 TTLL13PA6NNM8 815 aa8.38□□□□□ -1.07
USH2A-204ENST00000481786 TIE1P35590 1138 aa8.37□□□□□ -1.07
USH2A-204ENST00000481786 PROM2Q8N271 834 aa8.37□□□□□ -1.07
USH2A-204ENST00000481786 SEC24BO95487 1268 aa8.35□□□□□ -1.07
USH2A-204ENST00000481786 ST18O60284 1047 aa8.32□□□□□ -1.08
USH2A-204ENST00000481786 TRIM35Q9UPQ4 493 aa8.32□□□□□ -1.08
USH2A-204ENST00000481786 MIER1Q8N108 512 aa8.3□□□□□ -1.08
USH2A-204ENST00000481786 SLAIN1Q8ND83 568 aa8.29□□□□□ -1.08
USH2A-204ENST00000481786 PCDHB13Q9Y5F0 798 aa8.27□□□□□ -1.09
USH2A-204ENST00000481786 IFNL1Q8IU54 200 aa8.25□□□□□ -1.09
USH2A-204ENST00000481786 IER5LQ5T953 404 aa8.23□□□□□ -1.09
USH2A-204ENST00000481786 MMRN1Q13201 1228 aa8.22□□□□□ -1.09
USH2A-204ENST00000481786 SPNS2Q8IVW8 549 aa8.21□□□□□ -1.1
USH2A-204ENST00000481786 TMEM106CQ9BVX2 250 aa8.21□□□□□ -1.1
USH2A-204ENST00000481786 NUBP1P53384 320 aa8.2□□□□□ -1.1
USH2A-204ENST00000481786 MARVELD3Q96A59 401 aa8.19□□□□□ -1.1
USH2A-204ENST00000481786 PLEKHG5O94827 1062 aa8.18□□□□□ -1.1
USH2A-204ENST00000481786 IRX5P78411 483 aaPredicted RBP8.18□□□□□ -1.1
USH2A-204ENST00000481786 SGIP1Q9BQI5 828 aa8.18□□□□□ -1.1
USH2A-204ENST00000481786 PLCG2P16885 1265 aa8.17□□□□□ -1.1
USH2A-204ENST00000481786 PLCD3Q8N3E9 789 aa8.17□□□□□ -1.1
USH2A-204ENST00000481786 POTEB3A0JP26 581 aa8.09□□□□□ -1.11
USH2A-204ENST00000481786 POTEBQ6S5H4 581 aa8.09□□□□□ -1.11
USH2A-204ENST00000481786 OCEL1Q9H607 264 aa8.09□□□□□ -1.11
USH2A-204ENST00000481786 PYGBP11216 843 aa8.08□□□□□ -1.12
USH2A-204ENST00000481786 PCDHB8Q9UN66 801 aa8.08□□□□□ -1.12
USH2A-204ENST00000481786 FAM212AQ96EL1 285 aa8.07□□□□□ -1.12
USH2A-204ENST00000481786 TMEM121BQ9BXQ6 578 aaPredicted RBP8.07□□□□□ -1.12
USH2A-204ENST00000481786 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.06□□□□□ -1.12
USH2A-204ENST00000481786 KRTAP3-3Q9BYR6 98 aa8.04□□□□□ -1.12
USH2A-204ENST00000481786 KRTAP3-2Q9BYR7 98 aa8.04□□□□□ -1.12
USH2A-204ENST00000481786 PDCD7Q8N8D1 485 aaKnown RBP8.03□□□□□ -1.12
USH2A-204ENST00000481786 SNPHO15079 494 aa8.02□□□□□ -1.13
USH2A-204ENST00000481786 DCAF8Q5TAQ9 597 aa8.02□□□□□ -1.13
USH2A-204ENST00000481786 EMP3P54852 163 aa8.01□□□□□ -1.13
USH2A-204ENST00000481786 ZBTB47Q9UFB7 747 aaPredicted RBP8.01□□□□□ -1.13
USH2A-204ENST00000481786 HS3ST6Q96QI5 342 aa8□□□□□ -1.13
USH2A-204ENST00000481786 FAM205CA6NFA0 338 aa7.99□□□□□ -1.13
USH2A-204ENST00000481786 C3orf67Q6ZVT6 689 aa7.94□□□□□ -1.14
USH2A-204ENST00000481786 DPY19L2Q6NUT2 758 aa7.93□□□□□ -1.14
USH2A-204ENST00000481786 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.9□□□□□ -1.14
USH2A-204ENST00000481786 MKRN3Q13064 507 aaKnown RBP7.89□□□□□ -1.15
USH2A-204ENST00000481786 FKBP8Q14318 412 aa7.89□□□□□ -1.15
USH2A-204ENST00000481786 L3MBTL3Q96JM7 780 aaPredicted RBP7.89□□□□□ -1.15
USH2A-204ENST00000481786 HOXB3P14651 431 aaPredicted RBP7.88□□□□□ -1.15
USH2A-204ENST00000481786 GOLGA2Q08379 1002 aa7.87□□□□□ -1.15
USH2A-204ENST00000481786 PSEN1P49768 467 aa7.84□□□□□ -1.15
USH2A-204ENST00000481786 ZNF467Q7Z7K2 595 aaPredicted RBP7.83□□□□□ -1.16
USH2A-204ENST00000481786 ILDR1Q86SU0 546 aaPredicted RBP7.83□□□□□ -1.16
USH2A-204ENST00000481786 HOXB1P14653 301 aaPredicted RBP7.79□□□□□ -1.16
USH2A-204ENST00000481786 ERBB3P21860 1342 aa7.78□□□□□ -1.16
USH2A-204ENST00000481786 KLHL34Q8N239 644 aa7.78□□□□□ -1.16
USH2A-204ENST00000481786 CABP2Q9NPB3 220 aa7.78□□□□□ -1.16
USH2A-204ENST00000481786 BOLA1Q9Y3E2 137 aa7.78□□□□□ -1.16
USH2A-204ENST00000481786 CHRM1P11229 460 aaPredicted RBP7.77□□□□□ -1.17
USH2A-204ENST00000481786 GSE1Q14687 1217 aa7.77□□□□□ -1.17
USH2A-204ENST00000481786 RNF166Q96A37 237 aaPredicted RBP7.77□□□□□ -1.17
USH2A-204ENST00000481786 ZNF710Q8N1W2 664 aa7.76□□□□□ -1.17
USH2A-204ENST00000481786 VARS2Q5ST30 1063 aaKnown RBP7.75□□□□□ -1.17
USH2A-204ENST00000481786 PDAP1Q13442 181 aaKnown RBP7.74□□□□□ -1.17
USH2A-204ENST00000481786 VASPP50552 380 aaPredicted RBP7.72□□□□□ -1.17
USH2A-204ENST00000481786 TMEM92Q6UXU6 159 aa7.72□□□□□ -1.17
USH2A-204ENST00000481786 MYT1LQ9UL68 1186 aa7.72□□□□□ -1.17
USH2A-204ENST00000481786 G3V3G9 751 aa7.7□□□□□ -1.18
USH2A-204ENST00000481786 DOK7Q18PE1 504 aa7.7□□□□□ -1.18
USH2A-204ENST00000481786 FBXO3Q9UK99 471 aa7.7□□□□□ -1.18
USH2A-204ENST00000481786 EFCAB3Q8N7B9 438 aa7.66□□□□□ -1.18
USH2A-204ENST00000481786 GPR153Q6NV75 609 aa7.65□□□□□ -1.18
USH2A-204ENST00000481786 ZNF687Q8N1G0 1237 aa7.65□□□□□ -1.18
USH2A-204ENST00000481786 CIZ1Q9ULV3 898 aaPredicted RBP7.65□□□□□ -1.18
USH2A-204ENST00000481786 ANKRD13DQ6ZTN6 518 aa7.63□□□□□ -1.19
USH2A-204ENST00000481786 KHSRPQ92945 711 aaKnown RBP eCLIP7.63□□□□□ -1.19
USH2A-204ENST00000481786 MICALL2Q8IY33 904 aa7.62□□□□□ -1.19
USH2A-204ENST00000481786 RIMBP2O15034 1052 aa7.61□□□□□ -1.19
USH2A-204ENST00000481786 ARSIQ5FYB1 569 aa7.61□□□□□ -1.19
USH2A-204ENST00000481786 IFNLR1Q8IU57 520 aaPredicted RBP7.61□□□□□ -1.19
USH2A-204ENST00000481786 MS4A4AQ96JQ5 239 aa7.58□□□□□ -1.2
USH2A-204ENST00000481786 SPOCK2Q92563 424 aa7.57□□□□□ -1.2
USH2A-204ENST00000481786 ZSWIM6Q9HCJ5 1215 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms