RNA–Protein interactions for RNA: ENST00000479896.1

PTPRE-208, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 5,736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-208ENST00000479896 MRS2Q9HD23 443 aa16.46■□□□□ 0.22
PTPRE-208ENST00000479896 CFAP53Q96M91 514 aa16.43■□□□□ 0.22
PTPRE-208ENST00000479896 ARXQ96QS3 562 aa16.42■□□□□ 0.22
PTPRE-208ENST00000479896 RSF1Q96T23 1441 aaPredicted RBP16.42■□□□□ 0.22
PTPRE-208ENST00000479896 CDCA8Q53HL2 280 aa16.38■□□□□ 0.21
PTPRE-208ENST00000479896 NCLP19338 710 aaKnown RBP16.38■□□□□ 0.21
PTPRE-208ENST00000479896 EIF4G2P78344 907 aaKnown RBP eCLIP16.37■□□□□ 0.21
PTPRE-208ENST00000479896 RRP7BPQ9NSQ0 103 aa16.37■□□□□ 0.21
PTPRE-208ENST00000479896 NPHP1O15259 732 aa16.35■□□□□ 0.21
PTPRE-208ENST00000479896 EIF5BO60841 1220 aaKnown RBP16.34■□□□□ 0.21
PTPRE-208ENST00000479896 CASC1Q6TDU7 716 aa16.32■□□□□ 0.2
PTPRE-208ENST00000479896 LMOD2Q6P5Q4 547 aa16.31■□□□□ 0.2
PTPRE-208ENST00000479896 RGL3Q3MIN7 710 aa16.31■□□□□ 0.2
PTPRE-208ENST00000479896 PPM1GO15355 546 aaPredicted RBP16.31■□□□□ 0.2
PTPRE-208ENST00000479896 CLIP1P30622 1438 aa16.3■□□□□ 0.2
PTPRE-208ENST00000479896 BECN1Q14457 450 aa16.3■□□□□ 0.2
PTPRE-208ENST00000479896 KNSTRNQ9Y448 316 aa16.3■□□□□ 0.2
PTPRE-208ENST00000479896 ZRSR1Q15695 479 aaKnown RBP16.29■□□□□ 0.2
PTPRE-208ENST00000479896 CFDP1Q9UEE9 299 aaPredicted RBP16.29■□□□□ 0.2
PTPRE-208ENST00000479896 POGKQ9P215 609 aa16.29■□□□□ 0.2
PTPRE-208ENST00000479896 ERCC6Q03468 1493 aa16.28■□□□□ 0.2
PTPRE-208ENST00000479896 MAPK8IP3Q9UPT6 1336 aa16.27■□□□□ 0.19
PTPRE-208ENST00000479896 RB1CC1Q8TDY2 1594 aa16.27■□□□□ 0.19
PTPRE-208ENST00000479896 GOLGA6L22H0YM25 854 aa16.26■□□□□ 0.19
PTPRE-208ENST00000479896 NUDCQ9Y266 331 aa16.25■□□□□ 0.19
PTPRE-208ENST00000479896 GLIPR1L2Q4G1C9 344 aa16.25■□□□□ 0.19
PTPRE-208ENST00000479896 DDRGK1Q96HY6 314 aa16.24■□□□□ 0.19
PTPRE-208ENST00000479896 FTSJ3Q8IY81 847 aaKnown RBP16.23■□□□□ 0.19
PTPRE-208ENST00000479896 ZCCHC6Q5VYS8 1495 aaKnown RBP16.23■□□□□ 0.19
PTPRE-208ENST00000479896 TRHP20396 242 aaPredicted RBP16.23■□□□□ 0.19
PTPRE-208ENST00000479896 TULP1O00294 542 aaPredicted RBP16.22■□□□□ 0.19
PTPRE-208ENST00000479896 HDGFP51858 240 aaKnown RBP16.21■□□□□ 0.19
PTPRE-208ENST00000479896 NBR1Q14596 966 aa16.21■□□□□ 0.18
PTPRE-208ENST00000479896 LAS1LQ9Y4W2 734 aaKnown RBP16.21■□□□□ 0.18
PTPRE-208ENST00000479896 ANP32EQ9BTT0 268 aa16.2■□□□□ 0.18
PTPRE-208ENST00000479896 DCAF1Q9Y4B6 1507 aa16.2■□□□□ 0.18
PTPRE-208ENST00000479896 CARD11Q9BXL7 1154 aa16.19■□□□□ 0.18
PTPRE-208ENST00000479896 HIRIP3Q9BW71 556 aaPredicted RBP16.18■□□□□ 0.18
PTPRE-208ENST00000479896 GOLGA3Q08378 1498 aa16.17■□□□□ 0.18
PTPRE-208ENST00000479896 CHMP4BQ9H444 224 aaKnown RBP16.17■□□□□ 0.18
PTPRE-208ENST00000479896 GOLGA2Q08379 1002 aa16.17■□□□□ 0.18
PTPRE-208ENST00000479896 PNNQ9H307 717 aaKnown RBP16.16■□□□□ 0.18
PTPRE-208ENST00000479896 EEA1Q15075 1411 aa16.16■□□□□ 0.18
PTPRE-208ENST00000479896 KANK1Q14678 1352 aa16.16■□□□□ 0.18
PTPRE-208ENST00000479896 OS9Q13438 667 aaPredicted RBP16.15■□□□□ 0.18
PTPRE-208ENST00000479896 IRX6P78412 446 aaPredicted RBP16.15■□□□□ 0.18
PTPRE-208ENST00000479896 BAZ1BQ9UIG0 1483 aaKnown RBP16.14■□□□□ 0.17
PTPRE-208ENST00000479896 TRIM44Q96DX7 344 aaPredicted RBP16.14■□□□□ 0.17
PTPRE-208ENST00000479896 KIF27Q86VH2 1401 aa16.13■□□□□ 0.17
PTPRE-208ENST00000479896 NEUROD2Q15784 382 aa16.11■□□□□ 0.17
PTPRE-208ENST00000479896 PTMAP06454 111 aaKnown RBP16.1■□□□□ 0.17
PTPRE-208ENST00000479896 MS4A1P11836 297 aa16.09■□□□□ 0.17
PTPRE-208ENST00000479896 FGD1P98174 961 aa16.08■□□□□ 0.17
PTPRE-208ENST00000479896 CCDC180Q9P1Z9 1646 aa16.08■□□□□ 0.16
PTPRE-208ENST00000479896 MLECQ14165 292 aa16.07■□□□□ 0.16
PTPRE-208ENST00000479896 U2SURPO15042 1029 aaKnown RBP16.07■□□□□ 0.16
PTPRE-208ENST00000479896 CCNB3Q8WWL7 1395 aa16.06■□□□□ 0.16
PTPRE-208ENST00000479896 WRNQ14191 1432 aaPredicted RBP eCLIP16.06■□□□□ 0.16
PTPRE-208ENST00000479896 TNNT2P45379 298 aaPredicted RBP16.05■□□□□ 0.16
PTPRE-208ENST00000479896 TAOK2Q9UL54 1235 aa16.05■□□□□ 0.16
PTPRE-208ENST00000479896 KCNJ4P48050 445 aa16.04■□□□□ 0.16
PTPRE-208ENST00000479896 TPRNQ4KMQ1 711 aa16.04■□□□□ 0.16
PTPRE-208ENST00000479896 GOLGA6L6A8MZA4 724 aa16.04■□□□□ 0.16
PTPRE-208ENST00000479896 NAP1L2Q9ULW6 460 aaPredicted RBP16.02■□□□□ 0.15
PTPRE-208ENST00000479896 CEP162Q5TB80 1403 aa16.02■□□□□ 0.15
PTPRE-208ENST00000479896 FRAT1Q92837 279 aaPredicted RBP16.01■□□□□ 0.15
PTPRE-208ENST00000479896 TMF1P82094 1093 aa16.01■□□□□ 0.15
PTPRE-208ENST00000479896 SRPK2P78362 688 aaKnown RBP16■□□□□ 0.15
PTPRE-208ENST00000479896 MIER1Q8N108 512 aa16■□□□□ 0.15
PTPRE-208ENST00000479896 CC2D1BQ5T0F9 858 aaKnown RBP15.99■□□□□ 0.15
PTPRE-208ENST00000479896 EIF4G1Q04637 1599 aaKnown RBP15.98■□□□□ 0.15
PTPRE-208ENST00000479896 CEP164Q9UPV0 1460 aa15.98■□□□□ 0.15
PTPRE-208ENST00000479896 CLSTN1O94985 981 aa15.97■□□□□ 0.15
PTPRE-208ENST00000479896 SOX12O15370 315 aa15.97■□□□□ 0.15
PTPRE-208ENST00000479896 DNTTIP2Q5QJE6 756 aaKnown RBP15.97■□□□□ 0.15
PTPRE-208ENST00000479896 RTF1Q92541 710 aaKnown RBP15.97■□□□□ 0.15
PTPRE-208ENST00000479896 ISY1Q9ULR0 285 aaKnown RBP15.96■□□□□ 0.15
PTPRE-208ENST00000479896 TMX4Q9H1E5 349 aaPredicted RBP15.95■□□□□ 0.14
PTPRE-208ENST00000479896 NRDCO43847 1150 aa15.94■□□□□ 0.14
PTPRE-208ENST00000479896 HSP90AB1P08238 724 aaKnown RBP15.94■□□□□ 0.14
PTPRE-208ENST00000479896 SENP3-EIF4A1A0A087X0R7 540 aa15.94■□□□□ 0.14
PTPRE-208ENST00000479896 NACADO15069 1562 aa15.94■□□□□ 0.14
PTPRE-208ENST00000479896 HDGFL2Q7Z4V5 671 aaPredicted RBP15.93■□□□□ 0.14
PTPRE-208ENST00000479896 MORC1Q86VD1 984 aa15.93■□□□□ 0.14
PTPRE-208ENST00000479896 MCCP23508 829 aa15.92■□□□□ 0.14
PTPRE-208ENST00000479896 CSB-PGBD3P0DP91 1061 aa15.92■□□□□ 0.14
PTPRE-208ENST00000479896 FHAD1B1AJZ9 1412 aa15.92■□□□□ 0.14
PTPRE-208ENST00000479896 DCAF11Q8TEB1 546 aa15.92■□□□□ 0.14
PTPRE-208ENST00000479896 GOLGA6L4A6NEF3 574 aa15.91■□□□□ 0.14
PTPRE-208ENST00000479896 PLCB2Q00722 1185 aa15.91■□□□□ 0.14
PTPRE-208ENST00000479896 RGS3P49796 1198 aa15.9■□□□□ 0.14
PTPRE-208ENST00000479896 GGT6Q6P531 493 aa15.89■□□□□ 0.14
PTPRE-208ENST00000479896 CFAP44Q96MT7 982 aa15.89■□□□□ 0.13
PTPRE-208ENST00000479896 PAK3O75914 559 aaPredicted RBP15.89■□□□□ 0.13
PTPRE-208ENST00000479896 SAFB2Q14151 953 aaKnown RBP eCLIP15.89■□□□□ 0.13
PTPRE-208ENST00000479896 TNIKQ9UKE5 1360 aa15.88■□□□□ 0.13
PTPRE-208ENST00000479896 CCDC9Q9Y3X0 531 aaKnown RBP15.86■□□□□ 0.13
PTPRE-208ENST00000479896 STK26Q9P289 416 aa15.86■□□□□ 0.13
PTPRE-208ENST00000479896 CARMIL2Q6F5E8 1435 aa15.86■□□□□ 0.13
PTPRE-208ENST00000479896 GNL2Q13823 731 aaKnown RBP15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms