RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 FKBP8Q14318 412 aa12.58□□□□□ -0.4
USP48-208ENST00000479177 PLSCR2Q9NRY7 297 aa12.57□□□□□ -0.4
USP48-208ENST00000479177 MNX1P50219 401 aaPredicted RBP12.54□□□□□ -0.4
USP48-208ENST00000479177 PELP1Q8IZL8 1130 aaKnown RBP12.53□□□□□ -0.4
USP48-208ENST00000479177 SCRIBQ14160 1630 aa12.51□□□□□ -0.41
USP48-208ENST00000479177 PAK3O75914 559 aaPredicted RBP12.47□□□□□ -0.41
USP48-208ENST00000479177 SHROOM4Q9ULL8 1493 aa12.46□□□□□ -0.42
USP48-208ENST00000479177 UNC13AQ9UPW8 1703 aa12.43□□□□□ -0.42
USP48-208ENST00000479177 NPM1P06748 294 aaKnown RBP eCLIP12.42□□□□□ -0.42
USP48-208ENST00000479177 PROM2Q8N271 834 aa12.4□□□□□ -0.42
USP48-208ENST00000479177 MS4A3Q96HJ5 214 aa12.4□□□□□ -0.42
USP48-208ENST00000479177 POTEJP0CG39 1038 aa12.39□□□□□ -0.43
USP48-208ENST00000479177 POTEMA6NI47 508 aa12.36□□□□□ -0.43
USP48-208ENST00000479177 ASTLQ6HA08 431 aaPredicted RBP12.36□□□□□ -0.43
USP48-208ENST00000479177 ATMINO43313 823 aaPredicted RBP12.35□□□□□ -0.43
USP48-208ENST00000479177 METRNQ9UJH8 293 aa12.34□□□□□ -0.43
USP48-208ENST00000479177 POTEGQ6S5H5 508 aa12.32□□□□□ -0.44
USP48-208ENST00000479177 BICRAQ9NZM4 1560 aa12.3□□□□□ -0.44
USP48-208ENST00000479177 TSPYL2Q9H2G4 693 aaPredicted RBP12.3□□□□□ -0.44
USP48-208ENST00000479177 C7P10643 843 aa12.26□□□□□ -0.45
USP48-208ENST00000479177 SLC39A7Q92504 469 aa12.26□□□□□ -0.45
USP48-208ENST00000479177 CCDC61Q9Y6R9 512 aa12.25□□□□□ -0.45
USP48-208ENST00000479177 ATN1P54259 1190 aaPredicted RBP12.24□□□□□ -0.45
USP48-208ENST00000479177 TRPC6Q9Y210 931 aa12.22□□□□□ -0.45
USP48-208ENST00000479177 LCE2DQ5TA82 110 aaPredicted RBP12.21□□□□□ -0.45
USP48-208ENST00000479177 KIF12Q96FN5 646 aa12.2□□□□□ -0.46
USP48-208ENST00000479177 POTEFA5A3E0 1075 aa12.19□□□□□ -0.46
USP48-208ENST00000479177 BMP2KQ9NSY1 1161 aaPredicted RBP12.16□□□□□ -0.46
USP48-208ENST00000479177 MAP3K13O43283 966 aa12.12□□□□□ -0.47
USP48-208ENST00000479177 MAMSTRQ6ZN01 415 aa12.12□□□□□ -0.47
USP48-208ENST00000479177 FAM163AQ96GL9 167 aaPredicted RBP12.12□□□□□ -0.47
USP48-208ENST00000479177 RASEFQ8IZ41 740 aa12.11□□□□□ -0.47
USP48-208ENST00000479177 SCUBE2Q9NQ36 999 aa12.07□□□□□ -0.48
USP48-208ENST00000479177 PCDH10Q9P2E7 1040 aa12.06□□□□□ -0.48
USP48-208ENST00000479177 COLQQ9Y215 455 aaPredicted RBP12.06□□□□□ -0.48
USP48-208ENST00000479177 CECR2Q9BXF3 1484 aa12.06□□□□□ -0.48
USP48-208ENST00000479177 MIER1Q8N108 512 aa12.05□□□□□ -0.48
USP48-208ENST00000479177 TIE1P35590 1138 aa12.03□□□□□ -0.48
USP48-208ENST00000479177 FBXO3Q9UK99 471 aa12.03□□□□□ -0.48
USP48-208ENST00000479177 BAZ1AQ9NRL2 1556 aaPredicted RBP12.01□□□□□ -0.49
USP48-208ENST00000479177 TTLL13PA6NNM8 815 aa12.01□□□□□ -0.49
USP48-208ENST00000479177 SMARCA4P51532 1647 aa12□□□□□ -0.49
USP48-208ENST00000479177 MROH2BQ7Z745 1585 aa11.98□□□□□ -0.49
USP48-208ENST00000479177 VASPP50552 380 aaPredicted RBP11.97□□□□□ -0.49
USP48-208ENST00000479177 RSF1Q96T23 1441 aaPredicted RBP11.96□□□□□ -0.49
USP48-208ENST00000479177 EIF4G1Q04637 1599 aaKnown RBP11.94□□□□□ -0.5
USP48-208ENST00000479177 SEC24BO95487 1268 aa11.94□□□□□ -0.5
USP48-208ENST00000479177 PLEKHG5O94827 1062 aa11.93□□□□□ -0.5
USP48-208ENST00000479177 PLCD3Q8N3E9 789 aa11.93□□□□□ -0.5
USP48-208ENST00000479177 TRIM35Q9UPQ4 493 aa11.93□□□□□ -0.5
USP48-208ENST00000479177 PCDHB13Q9Y5F0 798 aa11.91□□□□□ -0.5
USP48-208ENST00000479177 NUBP1P53384 320 aa11.9□□□□□ -0.5
USP48-208ENST00000479177 IFNL1Q8IU54 200 aa11.88□□□□□ -0.51
USP48-208ENST00000479177 PEG3Q9GZU2 1588 aa11.88□□□□□ -0.51
USP48-208ENST00000479177 WIZO95785 1651 aa11.87□□□□□ -0.51
USP48-208ENST00000479177 SUPT5HO00267 1087 aaKnown RBP11.86□□□□□ -0.51
USP48-208ENST00000479177 SGIP1Q9BQI5 828 aa11.86□□□□□ -0.51
USP48-208ENST00000479177 IER5LQ5T953 404 aa11.85□□□□□ -0.51
USP48-208ENST00000479177 IFNLR1Q8IU57 520 aaPredicted RBP11.85□□□□□ -0.51
USP48-208ENST00000479177 CDAN1Q8IWY9 1227 aa11.84□□□□□ -0.51
USP48-208ENST00000479177 SMARCA2P51531 1590 aa11.83□□□□□ -0.52
USP48-208ENST00000479177 ATAD2BQ9ULI0 1458 aa11.82□□□□□ -0.52
USP48-208ENST00000479177 SLAIN1Q8ND83 568 aa11.81□□□□□ -0.52
USP48-208ENST00000479177 ST18O60284 1047 aa11.8□□□□□ -0.52
USP48-208ENST00000479177 TMEM106CQ9BVX2 250 aa11.8□□□□□ -0.52
USP48-208ENST00000479177 CC2D2AQ9P2K1 1620 aa11.79□□□□□ -0.52
USP48-208ENST00000479177 TOP2AP11388 1531 aaKnown RBP11.79□□□□□ -0.52
USP48-208ENST00000479177 KLHL34Q8N239 644 aa11.77□□□□□ -0.53
USP48-208ENST00000479177 HMGXB3Q12766 1538 aa11.76□□□□□ -0.53
USP48-208ENST00000479177 IRX5P78411 483 aaPredicted RBP11.75□□□□□ -0.53
USP48-208ENST00000479177 NCAPD3P42695 1498 aa11.74□□□□□ -0.53
USP48-208ENST00000479177 BAZ1BQ9UIG0 1483 aaKnown RBP11.74□□□□□ -0.53
USP48-208ENST00000479177 PLCG2P16885 1265 aa11.72□□□□□ -0.53
USP48-208ENST00000479177 FAM212AQ96EL1 285 aa11.72□□□□□ -0.53
USP48-208ENST00000479177 ZBTB47Q9UFB7 747 aaPredicted RBP11.72□□□□□ -0.53
USP48-208ENST00000479177 PYGBP11216 843 aa11.68□□□□□ -0.54
USP48-208ENST00000479177 PCDHB8Q9UN66 801 aa11.65□□□□□ -0.54
USP48-208ENST00000479177 SPOCK2Q92563 424 aa11.64□□□□□ -0.55
USP48-208ENST00000479177 OCEL1Q9H607 264 aa11.64□□□□□ -0.55
USP48-208ENST00000479177 DCAF8Q5TAQ9 597 aa11.63□□□□□ -0.55
USP48-208ENST00000479177 CCDC88BA6NC98 1476 aa11.61□□□□□ -0.55
USP48-208ENST00000479177 MARVELD3Q96A59 401 aa11.59□□□□□ -0.55
USP48-208ENST00000479177 MMRN1Q13201 1228 aa11.57□□□□□ -0.56
USP48-208ENST00000479177 SPNS2Q8IVW8 549 aa11.57□□□□□ -0.56
USP48-208ENST00000479177 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.55□□□□□ -0.56
USP48-208ENST00000479177 PDCD7Q8N8D1 485 aaKnown RBP11.53□□□□□ -0.56
USP48-208ENST00000479177 TMEM121BQ9BXQ6 578 aaPredicted RBP11.53□□□□□ -0.56
USP48-208ENST00000479177 CIZ1Q9ULV3 898 aaPredicted RBP11.52□□□□□ -0.57
USP48-208ENST00000479177 SNPHO15079 494 aa11.49□□□□□ -0.57
USP48-208ENST00000479177 POTEB3A0JP26 581 aa11.46□□□□□ -0.57
USP48-208ENST00000479177 GSE1Q14687 1217 aa11.46□□□□□ -0.57
USP48-208ENST00000479177 POTEBQ6S5H4 581 aa11.46□□□□□ -0.57
USP48-208ENST00000479177 CFTRP13569 1480 aa11.44□□□□□ -0.58
USP48-208ENST00000479177 PRDM2Q13029 1718 aa11.43□□□□□ -0.58
USP48-208ENST00000479177 PKD2Q13563 968 aa11.41□□□□□ -0.58
USP48-208ENST00000479177 C3orf67Q6ZVT6 689 aa11.41□□□□□ -0.58
USP48-208ENST00000479177 CADPSQ9ULU8 1353 aa11.41□□□□□ -0.58
USP48-208ENST00000479177 MKRN3Q13064 507 aaKnown RBP11.4□□□□□ -0.58
USP48-208ENST00000479177 EMP3P54852 163 aa11.39□□□□□ -0.59
USP48-208ENST00000479177 ZNF467Q7Z7K2 595 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 258.6 ms