RNA–Protein interactions for RNA: ENST00000478687.5

VRK2-209, Transcript of vaccinia related kinase 2, humanhuman

TSL 1 (best)

Gene VRK2, Length 1,021 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK2-209ENST00000478687 POTEJP0CG39 1038 aa12.15□□□□□ -0.46
VRK2-209ENST00000478687 MS4A3Q96HJ5 214 aa12.14□□□□□ -0.47
VRK2-209ENST00000478687 ATMINO43313 823 aaPredicted RBP12.12□□□□□ -0.47
VRK2-209ENST00000478687 POTEGQ6S5H5 508 aa12.12□□□□□ -0.47
VRK2-209ENST00000478687 METRNQ9UJH8 293 aa12.1□□□□□ -0.47
VRK2-209ENST00000478687 C7P10643 843 aa12.07□□□□□ -0.48
VRK2-209ENST00000478687 SLC39A7Q92504 469 aa12.07□□□□□ -0.48
VRK2-209ENST00000478687 LCE2DQ5TA82 110 aaPredicted RBP12.05□□□□□ -0.48
VRK2-209ENST00000478687 PROM2Q8N271 834 aa12.05□□□□□ -0.48
VRK2-209ENST00000478687 CCDC61Q9Y6R9 512 aa12.02□□□□□ -0.49
VRK2-209ENST00000478687 PCDH10Q9P2E7 1040 aa12□□□□□ -0.49
VRK2-209ENST00000478687 ATN1P54259 1190 aaPredicted RBP11.98□□□□□ -0.49
VRK2-209ENST00000478687 POTEFA5A3E0 1075 aa11.97□□□□□ -0.49
VRK2-209ENST00000478687 MAMSTRQ6ZN01 415 aa11.96□□□□□ -0.49
VRK2-209ENST00000478687 KIF12Q96FN5 646 aa11.95□□□□□ -0.5
VRK2-209ENST00000478687 RB1CC1Q8TDY2 1594 aa11.93□□□□□ -0.5
VRK2-209ENST00000478687 TSPYL2Q9H2G4 693 aaPredicted RBP11.92□□□□□ -0.5
VRK2-209ENST00000478687 BMP2KQ9NSY1 1161 aaPredicted RBP11.91□□□□□ -0.5
VRK2-209ENST00000478687 TRPC6Q9Y210 931 aa11.91□□□□□ -0.5
VRK2-209ENST00000478687 EHMT2Q96KQ7 1210 aa11.88□□□□□ -0.51
VRK2-209ENST00000478687 SCUBE2Q9NQ36 999 aa11.86□□□□□ -0.51
VRK2-209ENST00000478687 TIE1P35590 1138 aa11.85□□□□□ -0.51
VRK2-209ENST00000478687 MAP3K13O43283 966 aa11.82□□□□□ -0.52
VRK2-209ENST00000478687 FAM163AQ96GL9 167 aaPredicted RBP11.81□□□□□ -0.52
VRK2-209ENST00000478687 RASEFQ8IZ41 740 aa11.8□□□□□ -0.52
VRK2-209ENST00000478687 COLQQ9Y215 455 aaPredicted RBP11.79□□□□□ -0.52
VRK2-209ENST00000478687 NACADO15069 1562 aa11.79□□□□□ -0.52
VRK2-209ENST00000478687 TTLL13PA6NNM8 815 aa11.77□□□□□ -0.53
VRK2-209ENST00000478687 DCAF8L2P0C7V8 631 aa11.77□□□□□ -0.53
VRK2-209ENST00000478687 IER5LQ5T953 404 aa11.7□□□□□ -0.54
VRK2-209ENST00000478687 SGIP1Q9BQI5 828 aa11.7□□□□□ -0.54
VRK2-209ENST00000478687 UNC13AQ9UPW8 1703 aa11.67□□□□□ -0.54
VRK2-209ENST00000478687 TRIM35Q9UPQ4 493 aa11.67□□□□□ -0.54
VRK2-209ENST00000478687 MIER1Q8N108 512 aa11.66□□□□□ -0.54
VRK2-209ENST00000478687 SEC24BO95487 1268 aa11.63□□□□□ -0.55
VRK2-209ENST00000478687 PLEKHG5O94827 1062 aa11.62□□□□□ -0.55
VRK2-209ENST00000478687 NUBP1P53384 320 aa11.62□□□□□ -0.55
VRK2-209ENST00000478687 CDAN1Q8IWY9 1227 aa11.62□□□□□ -0.55
VRK2-209ENST00000478687 BICRAQ9NZM4 1560 aa11.6□□□□□ -0.55
VRK2-209ENST00000478687 PCDHB13Q9Y5F0 798 aa11.6□□□□□ -0.55
VRK2-209ENST00000478687 IFNL1Q8IU54 200 aa11.58□□□□□ -0.56
VRK2-209ENST00000478687 ST18O60284 1047 aa11.57□□□□□ -0.56
VRK2-209ENST00000478687 IRX5P78411 483 aaPredicted RBP11.54□□□□□ -0.56
VRK2-209ENST00000478687 SLAIN1Q8ND83 568 aa11.54□□□□□ -0.56
VRK2-209ENST00000478687 MYO15BQ96JP2 1530 aa11.53□□□□□ -0.56
VRK2-209ENST00000478687 TMEM106CQ9BVX2 250 aa11.5□□□□□ -0.57
VRK2-209ENST00000478687 PLCD3Q8N3E9 789 aa11.49□□□□□ -0.57
VRK2-209ENST00000478687 ZBTB47Q9UFB7 747 aaPredicted RBP11.48□□□□□ -0.57
VRK2-209ENST00000478687 PLCG2P16885 1265 aa11.46□□□□□ -0.57
VRK2-209ENST00000478687 FAM212AQ96EL1 285 aa11.44□□□□□ -0.58
VRK2-209ENST00000478687 TMEM121BQ9BXQ6 578 aaPredicted RBP11.42□□□□□ -0.58
VRK2-209ENST00000478687 CECR2Q9BXF3 1484 aa11.42□□□□□ -0.58
VRK2-209ENST00000478687 CC2D2AQ9P2K1 1620 aa11.42□□□□□ -0.58
VRK2-209ENST00000478687 MMRN1Q13201 1228 aa11.4□□□□□ -0.58
VRK2-209ENST00000478687 OCEL1Q9H607 264 aa11.4□□□□□ -0.58
VRK2-209ENST00000478687 SPNS2Q8IVW8 549 aa11.39□□□□□ -0.59
VRK2-209ENST00000478687 SHROOM4Q9ULL8 1493 aa11.38□□□□□ -0.59
VRK2-209ENST00000478687 ZCCHC6Q5VYS8 1495 aaKnown RBP11.37□□□□□ -0.59
VRK2-209ENST00000478687 SCRIBQ14160 1630 aa11.35□□□□□ -0.59
VRK2-209ENST00000478687 EIF4G1Q04637 1599 aaKnown RBP11.34□□□□□ -0.59
VRK2-209ENST00000478687 DCAF1Q9Y4B6 1507 aa11.32□□□□□ -0.6
VRK2-209ENST00000478687 SNPHO15079 494 aa11.31□□□□□ -0.6
VRK2-209ENST00000478687 PDCD7Q8N8D1 485 aaKnown RBP11.31□□□□□ -0.6
VRK2-209ENST00000478687 PYGBP11216 843 aa11.3□□□□□ -0.6
VRK2-209ENST00000478687 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.3□□□□□ -0.6
VRK2-209ENST00000478687 PCDHB8Q9UN66 801 aa11.29□□□□□ -0.6
VRK2-209ENST00000478687 MARVELD3Q96A59 401 aa11.28□□□□□ -0.6
VRK2-209ENST00000478687 DCAF8Q5TAQ9 597 aa11.24□□□□□ -0.61
VRK2-209ENST00000478687 POTEB3A0JP26 581 aa11.22□□□□□ -0.61
VRK2-209ENST00000478687 POTEBQ6S5H4 581 aa11.22□□□□□ -0.61
VRK2-209ENST00000478687 KRTAP3-3Q9BYR6 98 aa11.22□□□□□ -0.61
VRK2-209ENST00000478687 KRTAP3-2Q9BYR7 98 aa11.22□□□□□ -0.61
VRK2-209ENST00000478687 ILDR1Q86SU0 546 aaPredicted RBP11.2□□□□□ -0.62
VRK2-209ENST00000478687 DNAJC5Q9H3Z4 198 aa11.2□□□□□ -0.62
VRK2-209ENST00000478687 FKBP8Q14318 412 aa11.18□□□□□ -0.62
VRK2-209ENST00000478687 EMP3P54852 163 aa11.15□□□□□ -0.62
VRK2-209ENST00000478687 ZNF467Q7Z7K2 595 aaPredicted RBP11.15□□□□□ -0.62
VRK2-209ENST00000478687 L3MBTL3Q96JM7 780 aaPredicted RBP11.15□□□□□ -0.62
VRK2-209ENST00000478687 CHRM1P11229 460 aaPredicted RBP11.14□□□□□ -0.63
VRK2-209ENST00000478687 C3orf67Q6ZVT6 689 aa11.14□□□□□ -0.63
VRK2-209ENST00000478687 HS3ST6Q96QI5 342 aa11.14□□□□□ -0.63
VRK2-209ENST00000478687 MKRN3Q13064 507 aaKnown RBP11.1□□□□□ -0.63
VRK2-209ENST00000478687 GSE1Q14687 1217 aa11.09□□□□□ -0.63
VRK2-209ENST00000478687 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.08□□□□□ -0.64
VRK2-209ENST00000478687 FAM205CA6NFA0 338 aa11.07□□□□□ -0.64
VRK2-209ENST00000478687 FBXO3Q9UK99 471 aa11.07□□□□□ -0.64
VRK2-209ENST00000478687 HOXB3P14651 431 aaPredicted RBP11.06□□□□□ -0.64
VRK2-209ENST00000478687 PSEN1P49768 467 aa11.06□□□□□ -0.64
VRK2-209ENST00000478687 DPY19L2Q6NUT2 758 aa11.04□□□□□ -0.64
VRK2-209ENST00000478687 GOLGA2Q08379 1002 aa11.03□□□□□ -0.64
VRK2-209ENST00000478687 VASPP50552 380 aaPredicted RBP11.01□□□□□ -0.65
VRK2-209ENST00000478687 PDAP1Q13442 181 aaKnown RBP10.98□□□□□ -0.65
VRK2-209ENST00000478687 HOXB1P14653 301 aaPredicted RBP10.97□□□□□ -0.65
VRK2-209ENST00000478687 BOLA1Q9Y3E2 137 aa10.96□□□□□ -0.65
VRK2-209ENST00000478687 CUX2O14529 1486 aa10.95□□□□□ -0.66
VRK2-209ENST00000478687 ERCC6Q03468 1493 aa10.94□□□□□ -0.66
VRK2-209ENST00000478687 KLHL34Q8N239 644 aa10.93□□□□□ -0.66
VRK2-209ENST00000478687 CABP2Q9NPB3 220 aa10.91□□□□□ -0.66
VRK2-209ENST00000478687 NCAPD3P42695 1498 aa10.89□□□□□ -0.67
VRK2-209ENST00000478687 DOK7Q18PE1 504 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms