RNA–Protein interactions for RNA: ENST00000478451.1

GPNMB-210, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 862 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-210ENST00000478451 POTEJP0CG39 1038 aa11.75□□□□□ -0.53
GPNMB-210ENST00000478451 PHF12Q96QT6 1004 aa11.74□□□□□ -0.53
GPNMB-210ENST00000478451 FAM163AQ96GL9 167 aaPredicted RBP11.72□□□□□ -0.53
GPNMB-210ENST00000478451 STAG3Q9UJ98 1225 aa11.72□□□□□ -0.53
GPNMB-210ENST00000478451 SCUBE2Q9NQ36 999 aa11.7□□□□□ -0.54
GPNMB-210ENST00000478451 ATMINO43313 823 aaPredicted RBP11.68□□□□□ -0.54
GPNMB-210ENST00000478451 SPDYE4A6NLX3 237 aa11.67□□□□□ -0.54
GPNMB-210ENST00000478451 NPM1P06748 294 aaKnown RBP eCLIP11.63□□□□□ -0.55
GPNMB-210ENST00000478451 CDAN1Q8IWY9 1227 aa11.59□□□□□ -0.55
GPNMB-210ENST00000478451 MS4A3Q96HJ5 214 aa11.59□□□□□ -0.55
GPNMB-210ENST00000478451 FKBP8Q14318 412 aa11.53□□□□□ -0.56
GPNMB-210ENST00000478451 MNX1P50219 401 aaPredicted RBP11.51□□□□□ -0.57
GPNMB-210ENST00000478451 ATN1P54259 1190 aaPredicted RBP11.48□□□□□ -0.57
GPNMB-210ENST00000478451 PROM2Q8N271 834 aa11.46□□□□□ -0.57
GPNMB-210ENST00000478451 POTEFA5A3E0 1075 aa11.44□□□□□ -0.58
GPNMB-210ENST00000478451 MMRN1Q13201 1228 aa11.39□□□□□ -0.59
GPNMB-210ENST00000478451 BMP2KQ9NSY1 1161 aaPredicted RBP11.36□□□□□ -0.59
GPNMB-210ENST00000478451 TIE1P35590 1138 aa11.34□□□□□ -0.59
GPNMB-210ENST00000478451 CCDC61Q9Y6R9 512 aa11.34□□□□□ -0.59
GPNMB-210ENST00000478451 SPNS2Q8IVW8 549 aa11.33□□□□□ -0.6
GPNMB-210ENST00000478451 ST18O60284 1047 aa11.32□□□□□ -0.6
GPNMB-210ENST00000478451 KIF12Q96FN5 646 aa11.32□□□□□ -0.6
GPNMB-210ENST00000478451 SEC24BO95487 1268 aa11.29□□□□□ -0.6
GPNMB-210ENST00000478451 TSPYL2Q9H2G4 693 aaPredicted RBP11.27□□□□□ -0.61
GPNMB-210ENST00000478451 COLQQ9Y215 455 aaPredicted RBP11.27□□□□□ -0.61
GPNMB-210ENST00000478451 IER5LQ5T953 404 aa11.26□□□□□ -0.61
GPNMB-210ENST00000478451 TMEM121BQ9BXQ6 578 aaPredicted RBP11.25□□□□□ -0.61
GPNMB-210ENST00000478451 SLAIN1Q8ND83 568 aa11.23□□□□□ -0.61
GPNMB-210ENST00000478451 TRPC6Q9Y210 931 aa11.22□□□□□ -0.61
GPNMB-210ENST00000478451 TTLL13PA6NNM8 815 aa11.2□□□□□ -0.62
GPNMB-210ENST00000478451 MAP3K13O43283 966 aa11.17□□□□□ -0.62
GPNMB-210ENST00000478451 FBXO3Q9UK99 471 aa11.16□□□□□ -0.62
GPNMB-210ENST00000478451 TRIM35Q9UPQ4 493 aa11.12□□□□□ -0.63
GPNMB-210ENST00000478451 SNPHO15079 494 aa11.11□□□□□ -0.63
GPNMB-210ENST00000478451 SGIP1Q9BQI5 828 aa11.1□□□□□ -0.63
GPNMB-210ENST00000478451 MIER1Q8N108 512 aa11.08□□□□□ -0.64
GPNMB-210ENST00000478451 PLEKHG5O94827 1062 aa11.05□□□□□ -0.64
GPNMB-210ENST00000478451 PLCD3Q8N3E9 789 aa11.05□□□□□ -0.64
GPNMB-210ENST00000478451 PLCG2P16885 1265 aa11.02□□□□□ -0.65
GPNMB-210ENST00000478451 VASPP50552 380 aaPredicted RBP11.02□□□□□ -0.65
GPNMB-210ENST00000478451 MARVELD3Q96A59 401 aa10.98□□□□□ -0.65
GPNMB-210ENST00000478451 RASEFQ8IZ41 740 aa10.97□□□□□ -0.65
GPNMB-210ENST00000478451 IRX5P78411 483 aaPredicted RBP10.96□□□□□ -0.65
GPNMB-210ENST00000478451 PCDHB13Q9Y5F0 798 aa10.96□□□□□ -0.65
GPNMB-210ENST00000478451 ZBTB47Q9UFB7 747 aaPredicted RBP10.95□□□□□ -0.66
GPNMB-210ENST00000478451 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.93□□□□□ -0.66
GPNMB-210ENST00000478451 KRTAP3-3Q9BYR6 98 aa10.92□□□□□ -0.66
GPNMB-210ENST00000478451 KRTAP3-2Q9BYR7 98 aa10.92□□□□□ -0.66
GPNMB-210ENST00000478451 TMEM106CQ9BVX2 250 aa10.9□□□□□ -0.66
GPNMB-210ENST00000478451 OCEL1Q9H607 264 aa10.9□□□□□ -0.66
GPNMB-210ENST00000478451 EMP3P54852 163 aa10.89□□□□□ -0.67
GPNMB-210ENST00000478451 IFNL1Q8IU54 200 aa10.86□□□□□ -0.67
GPNMB-210ENST00000478451 KLHL34Q8N239 644 aa10.86□□□□□ -0.67
GPNMB-210ENST00000478451 HS3ST6Q96QI5 342 aa10.85□□□□□ -0.67
GPNMB-210ENST00000478451 IFNLR1Q8IU57 520 aaPredicted RBP10.84□□□□□ -0.67
GPNMB-210ENST00000478451 NUBP1P53384 320 aa10.82□□□□□ -0.68
GPNMB-210ENST00000478451 POTEB3A0JP26 581 aa10.8□□□□□ -0.68
GPNMB-210ENST00000478451 POTEBQ6S5H4 581 aa10.8□□□□□ -0.68
GPNMB-210ENST00000478451 FAM205CA6NFA0 338 aa10.78□□□□□ -0.68
GPNMB-210ENST00000478451 FAM212AQ96EL1 285 aa10.76□□□□□ -0.69
GPNMB-210ENST00000478451 SPOCK2Q92563 424 aa10.75□□□□□ -0.69
GPNMB-210ENST00000478451 C3orf67Q6ZVT6 689 aa10.72□□□□□ -0.69
GPNMB-210ENST00000478451 RNF166Q96A37 237 aaPredicted RBP10.7□□□□□ -0.7
GPNMB-210ENST00000478451 DCAF8Q5TAQ9 597 aa10.69□□□□□ -0.7
GPNMB-210ENST00000478451 L3MBTL3Q96JM7 780 aaPredicted RBP10.68□□□□□ -0.7
GPNMB-210ENST00000478451 GSE1Q14687 1217 aa10.66□□□□□ -0.7
GPNMB-210ENST00000478451 PDCD7Q8N8D1 485 aaKnown RBP10.65□□□□□ -0.7
GPNMB-210ENST00000478451 CIZ1Q9ULV3 898 aaPredicted RBP10.62□□□□□ -0.71
GPNMB-210ENST00000478451 PYGBP11216 843 aa10.59□□□□□ -0.71
GPNMB-210ENST00000478451 MYT1LQ9UL68 1186 aa10.59□□□□□ -0.71
GPNMB-210ENST00000478451 HOXB1P14653 301 aaPredicted RBP10.56□□□□□ -0.72
GPNMB-210ENST00000478451 PTGER2P43116 358 aa10.54□□□□□ -0.72
GPNMB-210ENST00000478451 HOXB3P14651 431 aaPredicted RBP10.52□□□□□ -0.73
GPNMB-210ENST00000478451 ERBB3P21860 1342 aa10.52□□□□□ -0.73
GPNMB-210ENST00000478451 CHRM1P11229 460 aaPredicted RBP10.51□□□□□ -0.73
GPNMB-210ENST00000478451 MKRN3Q13064 507 aaKnown RBP10.51□□□□□ -0.73
GPNMB-210ENST00000478451 TRIM41Q8WV44 630 aa10.5□□□□□ -0.73
GPNMB-210ENST00000478451 GOLGA2Q08379 1002 aa10.49□□□□□ -0.73
GPNMB-210ENST00000478451 PCDHB8Q9UN66 801 aa10.49□□□□□ -0.73
GPNMB-210ENST00000478451 ZNF710Q8N1W2 664 aa10.48□□□□□ -0.73
GPNMB-210ENST00000478451 DOK7Q18PE1 504 aa10.46□□□□□ -0.73
GPNMB-210ENST00000478451 ILDR1Q86SU0 546 aaPredicted RBP10.46□□□□□ -0.73
GPNMB-210ENST00000478451 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.46□□□□□ -0.73
GPNMB-210ENST00000478451 ZNF467Q7Z7K2 595 aaPredicted RBP10.45□□□□□ -0.74
GPNMB-210ENST00000478451 ZNF687Q8N1G0 1237 aa10.42□□□□□ -0.74
GPNMB-210ENST00000478451 PKD2Q13563 968 aa10.41□□□□□ -0.74
GPNMB-210ENST00000478451 RIMBP2O15034 1052 aa10.4□□□□□ -0.74
GPNMB-210ENST00000478451 ECM2O94769 699 aaPredicted RBP10.4□□□□□ -0.74
GPNMB-210ENST00000478451 VARS2Q5ST30 1063 aaKnown RBP10.4□□□□□ -0.74
GPNMB-210ENST00000478451 G3V3G9 751 aa10.37□□□□□ -0.75
GPNMB-210ENST00000478451 RNF25Q96BH1 459 aaPredicted RBP10.36□□□□□ -0.75
GPNMB-210ENST00000478451 BOLA1Q9Y3E2 137 aa10.36□□□□□ -0.75
GPNMB-210ENST00000478451 ZSWIM6Q9HCJ5 1215 aa10.35□□□□□ -0.75
GPNMB-210ENST00000478451 RIOK3O14730 519 aaKnown RBP10.34□□□□□ -0.75
GPNMB-210ENST00000478451 PSEN1P49768 467 aa10.34□□□□□ -0.75
GPNMB-210ENST00000478451 PDAP1Q13442 181 aaKnown RBP10.34□□□□□ -0.75
GPNMB-210ENST00000478451 DPY19L2Q6NUT2 758 aa10.3□□□□□ -0.76
GPNMB-210ENST00000478451 RGL2O15211 777 aa10.29□□□□□ -0.76
GPNMB-210ENST00000478451 VGFO15240 615 aaPredicted RBP10.28□□□□□ -0.76
GPNMB-210ENST00000478451 PLA2G2EQ9NZK7 142 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms