RNA–Protein interactions for RNA: ENST00000478050.1

SF3B6-202, Transcript of splicing factor 3b subunit 6, humanhuman

TSL 2

Gene SF3B6, Length 720 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-202ENST00000478050 MS4A3Q96HJ5 214 aa10.09□□□□□ -0.79
SF3B6-202ENST00000478050 METRNQ9UJH8 293 aa10.08□□□□□ -0.8
SF3B6-202ENST00000478050 C7P10643 843 aa10.06□□□□□ -0.8
SF3B6-202ENST00000478050 ASTLQ6HA08 431 aaPredicted RBP10.06□□□□□ -0.8
SF3B6-202ENST00000478050 SLC39A7Q92504 469 aa10.06□□□□□ -0.8
SF3B6-202ENST00000478050 TSPYL2Q9H2G4 693 aaPredicted RBP10.06□□□□□ -0.8
SF3B6-202ENST00000478050 ATMINO43313 823 aaPredicted RBP10.04□□□□□ -0.8
SF3B6-202ENST00000478050 MAMSTRQ6ZN01 415 aa10.03□□□□□ -0.8
SF3B6-202ENST00000478050 PLEKHG5O94827 1062 aa9.99□□□□□ -0.81
SF3B6-202ENST00000478050 CCDC61Q9Y6R9 512 aa9.96□□□□□ -0.82
SF3B6-202ENST00000478050 ATN1P54259 1190 aaPredicted RBP9.95□□□□□ -0.82
SF3B6-202ENST00000478050 SCUBE2Q9NQ36 999 aa9.95□□□□□ -0.82
SF3B6-202ENST00000478050 POTEJP0CG39 1038 aa9.94□□□□□ -0.82
SF3B6-202ENST00000478050 KIF12Q96FN5 646 aa9.94□□□□□ -0.82
SF3B6-202ENST00000478050 MIER1Q8N108 512 aa9.93□□□□□ -0.82
SF3B6-202ENST00000478050 PROM2Q8N271 834 aa9.92□□□□□ -0.82
SF3B6-202ENST00000478050 FAM163AQ96GL9 167 aaPredicted RBP9.92□□□□□ -0.82
SF3B6-202ENST00000478050 BMP2KQ9NSY1 1161 aaPredicted RBP9.89□□□□□ -0.83
SF3B6-202ENST00000478050 MAP3K13O43283 966 aa9.88□□□□□ -0.83
SF3B6-202ENST00000478050 SEC24BO95487 1268 aa9.85□□□□□ -0.83
SF3B6-202ENST00000478050 TIE1P35590 1138 aa9.85□□□□□ -0.83
SF3B6-202ENST00000478050 RASEFQ8IZ41 740 aa9.84□□□□□ -0.83
SF3B6-202ENST00000478050 TRPC6Q9Y210 931 aa9.84□□□□□ -0.83
SF3B6-202ENST00000478050 PLCD3Q8N3E9 789 aa9.82□□□□□ -0.84
SF3B6-202ENST00000478050 POTEFA5A3E0 1075 aa9.8□□□□□ -0.84
SF3B6-202ENST00000478050 TTLL13PA6NNM8 815 aa9.78□□□□□ -0.84
SF3B6-202ENST00000478050 LCE2DQ5TA82 110 aaPredicted RBP9.78□□□□□ -0.84
SF3B6-202ENST00000478050 PCDHB13Q9Y5F0 798 aa9.77□□□□□ -0.85
SF3B6-202ENST00000478050 ZBTB47Q9UFB7 747 aaPredicted RBP9.76□□□□□ -0.85
SF3B6-202ENST00000478050 COLQQ9Y215 455 aaPredicted RBP9.76□□□□□ -0.85
SF3B6-202ENST00000478050 SGIP1Q9BQI5 828 aa9.75□□□□□ -0.85
SF3B6-202ENST00000478050 IER5LQ5T953 404 aa9.74□□□□□ -0.85
SF3B6-202ENST00000478050 TRIM35Q9UPQ4 493 aa9.74□□□□□ -0.85
SF3B6-202ENST00000478050 SLAIN1Q8ND83 568 aa9.68□□□□□ -0.86
SF3B6-202ENST00000478050 FAM212AQ96EL1 285 aa9.68□□□□□ -0.86
SF3B6-202ENST00000478050 NUBP1P53384 320 aa9.67□□□□□ -0.86
SF3B6-202ENST00000478050 IFNL1Q8IU54 200 aa9.67□□□□□ -0.86
SF3B6-202ENST00000478050 CDAN1Q8IWY9 1227 aa9.67□□□□□ -0.86
SF3B6-202ENST00000478050 TMEM106CQ9BVX2 250 aa9.67□□□□□ -0.86
SF3B6-202ENST00000478050 PLCG2P16885 1265 aa9.66□□□□□ -0.86
SF3B6-202ENST00000478050 ABCC9O60706 1549 aa9.65□□□□□ -0.86
SF3B6-202ENST00000478050 ST18O60284 1047 aa9.59□□□□□ -0.87
SF3B6-202ENST00000478050 DCAF8Q5TAQ9 597 aa9.59□□□□□ -0.87
SF3B6-202ENST00000478050 OCEL1Q9H607 264 aa9.56□□□□□ -0.88
SF3B6-202ENST00000478050 IRX5P78411 483 aaPredicted RBP9.55□□□□□ -0.88
SF3B6-202ENST00000478050 MMRN1Q13201 1228 aa9.55□□□□□ -0.88
SF3B6-202ENST00000478050 SNPHO15079 494 aa9.54□□□□□ -0.88
SF3B6-202ENST00000478050 PYGBP11216 843 aa9.54□□□□□ -0.88
SF3B6-202ENST00000478050 FKBP8Q14318 412 aa9.53□□□□□ -0.88
SF3B6-202ENST00000478050 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.52□□□□□ -0.89
SF3B6-202ENST00000478050 DNAJC5Q9H3Z4 198 aa9.51□□□□□ -0.89
SF3B6-202ENST00000478050 PCDHB8Q9UN66 801 aa9.5□□□□□ -0.89
SF3B6-202ENST00000478050 TMEM121BQ9BXQ6 578 aaPredicted RBP9.49□□□□□ -0.89
SF3B6-202ENST00000478050 GOLGA2Q08379 1002 aa9.46□□□□□ -0.9
SF3B6-202ENST00000478050 FBXO3Q9UK99 471 aa9.45□□□□□ -0.9
SF3B6-202ENST00000478050 SPNS2Q8IVW8 549 aa9.44□□□□□ -0.9
SF3B6-202ENST00000478050 MARVELD3Q96A59 401 aa9.44□□□□□ -0.9
SF3B6-202ENST00000478050 KLHL34Q8N239 644 aa9.43□□□□□ -0.9
SF3B6-202ENST00000478050 MKRN3Q13064 507 aaKnown RBP9.42□□□□□ -0.9
SF3B6-202ENST00000478050 C3orf67Q6ZVT6 689 aa9.42□□□□□ -0.9
SF3B6-202ENST00000478050 L3MBTL3Q96JM7 780 aaPredicted RBP9.41□□□□□ -0.9
SF3B6-202ENST00000478050 GSE1Q14687 1217 aa9.4□□□□□ -0.9
SF3B6-202ENST00000478050 ZNF467Q7Z7K2 595 aaPredicted RBP9.4□□□□□ -0.9
SF3B6-202ENST00000478050 EMP3P54852 163 aa9.37□□□□□ -0.91
SF3B6-202ENST00000478050 PDCD7Q8N8D1 485 aaKnown RBP9.36□□□□□ -0.91
SF3B6-202ENST00000478050 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.36□□□□□ -0.91
SF3B6-202ENST00000478050 PSEN1P49768 467 aa9.32□□□□□ -0.92
SF3B6-202ENST00000478050 CHRM1P11229 460 aaPredicted RBP9.31□□□□□ -0.92
SF3B6-202ENST00000478050 G3V3G9 751 aa9.3□□□□□ -0.92
SF3B6-202ENST00000478050 VASPP50552 380 aaPredicted RBP9.3□□□□□ -0.92
SF3B6-202ENST00000478050 FAM205CA6NFA0 338 aa9.29□□□□□ -0.92
SF3B6-202ENST00000478050 HS3ST6Q96QI5 342 aa9.27□□□□□ -0.93
SF3B6-202ENST00000478050 PDAP1Q13442 181 aaKnown RBP9.25□□□□□ -0.93
SF3B6-202ENST00000478050 DPY19L2Q6NUT2 758 aa9.22□□□□□ -0.93
SF3B6-202ENST00000478050 CABP2Q9NPB3 220 aa9.22□□□□□ -0.93
SF3B6-202ENST00000478050 CIZ1Q9ULV3 898 aaPredicted RBP9.22□□□□□ -0.93
SF3B6-202ENST00000478050 POTEB3A0JP26 581 aa9.21□□□□□ -0.94
SF3B6-202ENST00000478050 POTEBQ6S5H4 581 aa9.21□□□□□ -0.94
SF3B6-202ENST00000478050 KRTAP3-3Q9BYR6 98 aa9.21□□□□□ -0.94
SF3B6-202ENST00000478050 KRTAP3-2Q9BYR7 98 aa9.21□□□□□ -0.94
SF3B6-202ENST00000478050 ZNF710Q8N1W2 664 aa9.2□□□□□ -0.94
SF3B6-202ENST00000478050 BOLA1Q9Y3E2 137 aa9.2□□□□□ -0.94
SF3B6-202ENST00000478050 ILDR1Q86SU0 546 aaPredicted RBP9.18□□□□□ -0.94
SF3B6-202ENST00000478050 SPOCK2Q92563 424 aa9.17□□□□□ -0.94
SF3B6-202ENST00000478050 DOK7Q18PE1 504 aa9.15□□□□□ -0.94
SF3B6-202ENST00000478050 ERBB3P21860 1342 aa9.14□□□□□ -0.95
SF3B6-202ENST00000478050 HOXB3P14651 431 aaPredicted RBP9.14□□□□□ -0.95
SF3B6-202ENST00000478050 HOXB1P14653 301 aaPredicted RBP9.12□□□□□ -0.95
SF3B6-202ENST00000478050 RIMBP2O15034 1052 aa9.11□□□□□ -0.95
SF3B6-202ENST00000478050 IFNLR1Q8IU57 520 aaPredicted RBP9.08□□□□□ -0.96
SF3B6-202ENST00000478050 EFCAB3Q8N7B9 438 aa9.06□□□□□ -0.96
SF3B6-202ENST00000478050 VARS2Q5ST30 1063 aaKnown RBP9.05□□□□□ -0.96
SF3B6-202ENST00000478050 RNF166Q96A37 237 aaPredicted RBP9.05□□□□□ -0.96
SF3B6-202ENST00000478050 TRIM41Q8WV44 630 aa9.03□□□□□ -0.96
SF3B6-202ENST00000478050 MYT1LQ9UL68 1186 aa9.01□□□□□ -0.97
SF3B6-202ENST00000478050 CCDC180Q9P1Z9 1646 aa9.01□□□□□ -0.97
SF3B6-202ENST00000478050 MICALL2Q8IY33 904 aa9□□□□□ -0.97
SF3B6-202ENST00000478050 ZSWIM6Q9HCJ5 1215 aa9□□□□□ -0.97
SF3B6-202ENST00000478050 SOX12O15370 315 aa8.97□□□□□ -0.97
SF3B6-202ENST00000478050 ZNF687Q8N1G0 1237 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms