RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-206ENST00000476045 RASEFQ8IZ41 740 aa9.01□□□□□ -0.97
VPS13D-206ENST00000476045 PHF12Q96QT6 1004 aa8.97□□□□□ -0.97
VPS13D-206ENST00000476045 RB1CC1Q8TDY2 1594 aa8.95□□□□□ -0.98
VPS13D-206ENST00000476045 GALR2O43603 387 aaPredicted RBP8.93□□□□□ -0.98
VPS13D-206ENST00000476045 POTEIP0CG38 1075 aa8.93□□□□□ -0.98
VPS13D-206ENST00000476045 TSPYL2Q9H2G4 693 aaPredicted RBP8.93□□□□□ -0.98
VPS13D-206ENST00000476045 IFNLR1Q8IU57 520 aaPredicted RBP8.92□□□□□ -0.98
VPS13D-206ENST00000476045 KIF12Q96FN5 646 aa8.92□□□□□ -0.98
VPS13D-206ENST00000476045 FAM212AQ96EL1 285 aa8.9□□□□□ -0.98
VPS13D-206ENST00000476045 MS4A3Q96HJ5 214 aa8.9□□□□□ -0.98
VPS13D-206ENST00000476045 NACADO15069 1562 aa8.9□□□□□ -0.99
VPS13D-206ENST00000476045 SGIP1Q9BQI5 828 aa8.89□□□□□ -0.99
VPS13D-206ENST00000476045 MAP3K13O43283 966 aa8.84□□□□□ -0.99
VPS13D-206ENST00000476045 ASTLQ6HA08 431 aaPredicted RBP8.84□□□□□ -0.99
VPS13D-206ENST00000476045 MYO15BQ96JP2 1530 aa8.84□□□□□ -0.99
VPS13D-206ENST00000476045 SPOCK2Q92563 424 aa8.83□□□□□ -1
VPS13D-206ENST00000476045 KLHL34Q8N239 644 aa8.82□□□□□ -1
VPS13D-206ENST00000476045 DCBLD2Q96PD2 775 aa8.82□□□□□ -1
VPS13D-206ENST00000476045 GSE1Q14687 1217 aa8.81□□□□□ -1
VPS13D-206ENST00000476045 TIE1P35590 1138 aa8.8□□□□□ -1
VPS13D-206ENST00000476045 ATMINO43313 823 aaPredicted RBP8.79□□□□□ -1
VPS13D-206ENST00000476045 CHRM1P11229 460 aaPredicted RBP8.79□□□□□ -1
VPS13D-206ENST00000476045 TRPC6Q9Y210 931 aa8.77□□□□□ -1.01
VPS13D-206ENST00000476045 DCAF8Q5TAQ9 597 aa8.76□□□□□ -1.01
VPS13D-206ENST00000476045 BMP2KQ9NSY1 1161 aaPredicted RBP8.76□□□□□ -1.01
VPS13D-206ENST00000476045 PCDHB13Q9Y5F0 798 aa8.76□□□□□ -1.01
VPS13D-206ENST00000476045 UNC13AQ9UPW8 1703 aa8.75□□□□□ -1.01
VPS13D-206ENST00000476045 IFNL1Q8IU54 200 aa8.75□□□□□ -1.01
VPS13D-206ENST00000476045 PELP1Q8IZL8 1130 aaKnown RBP8.75□□□□□ -1.01
VPS13D-206ENST00000476045 DCAF1Q9Y4B6 1507 aa8.73□□□□□ -1.01
VPS13D-206ENST00000476045 PYGBP11216 843 aa8.72□□□□□ -1.01
VPS13D-206ENST00000476045 ATN1P54259 1190 aaPredicted RBP8.72□□□□□ -1.01
VPS13D-206ENST00000476045 TTLL13PA6NNM8 815 aa8.71□□□□□ -1.02
VPS13D-206ENST00000476045 TRIM41Q8WV44 630 aa8.71□□□□□ -1.02
VPS13D-206ENST00000476045 ZCCHC6Q5VYS8 1495 aaKnown RBP8.7□□□□□ -1.02
VPS13D-206ENST00000476045 SLC39A7Q92504 469 aa8.7□□□□□ -1.02
VPS13D-206ENST00000476045 SHROOM4Q9ULL8 1493 aa8.7□□□□□ -1.02
VPS13D-206ENST00000476045 ZNF467Q7Z7K2 595 aaPredicted RBP8.69□□□□□ -1.02
VPS13D-206ENST00000476045 C7P10643 843 aa8.68□□□□□ -1.02
VPS13D-206ENST00000476045 LHX8Q68G74 356 aa8.68□□□□□ -1.02
VPS13D-206ENST00000476045 IER5LQ5T953 404 aa8.66□□□□□ -1.02
VPS13D-206ENST00000476045 METRNQ9UJH8 293 aa8.66□□□□□ -1.02
VPS13D-206ENST00000476045 PCDHB8Q9UN66 801 aa8.64□□□□□ -1.03
VPS13D-206ENST00000476045 POTEFA5A3E0 1075 aa8.63□□□□□ -1.03
VPS13D-206ENST00000476045 TMEM106CQ9BVX2 250 aa8.63□□□□□ -1.03
VPS13D-206ENST00000476045 CIZ1Q9ULV3 898 aaPredicted RBP8.63□□□□□ -1.03
VPS13D-206ENST00000476045 TRIM35Q9UPQ4 493 aa8.63□□□□□ -1.03
VPS13D-206ENST00000476045 POTEB2H3BUK9 544 aa8.62□□□□□ -1.03
VPS13D-206ENST00000476045 BICRAQ9NZM4 1560 aa8.61□□□□□ -1.03
VPS13D-206ENST00000476045 PDAP1Q13442 181 aaKnown RBP8.59□□□□□ -1.03
VPS13D-206ENST00000476045 RNF25Q96BH1 459 aaPredicted RBP8.59□□□□□ -1.03
VPS13D-206ENST00000476045 POTEJP0CG39 1038 aa8.56□□□□□ -1.04
VPS13D-206ENST00000476045 PSEN1P49768 467 aa8.56□□□□□ -1.04
VPS13D-206ENST00000476045 IRX5P78411 483 aaPredicted RBP8.56□□□□□ -1.04
VPS13D-206ENST00000476045 ILDR1Q86SU0 546 aaPredicted RBP8.56□□□□□ -1.04
VPS13D-206ENST00000476045 COLQQ9Y215 455 aaPredicted RBP8.55□□□□□ -1.04
VPS13D-206ENST00000476045 PKD2Q13563 968 aa8.54□□□□□ -1.04
VPS13D-206ENST00000476045 OTUD5Q96G74 571 aa8.54□□□□□ -1.04
VPS13D-206ENST00000476045 RIOK3O14730 519 aaKnown RBP8.52□□□□□ -1.05
VPS13D-206ENST00000476045 DCAF8L2P0C7V8 631 aa8.52□□□□□ -1.05
VPS13D-206ENST00000476045 SCRIBQ14160 1630 aa8.51□□□□□ -1.05
VPS13D-206ENST00000476045 VGFO15240 615 aaPredicted RBP8.49□□□□□ -1.05
VPS13D-206ENST00000476045 MAMSTRQ6ZN01 415 aa8.49□□□□□ -1.05
VPS13D-206ENST00000476045 PDCD7Q8N8D1 485 aaKnown RBP8.49□□□□□ -1.05
VPS13D-206ENST00000476045 OCEL1Q9H607 264 aa8.48□□□□□ -1.05
VPS13D-206ENST00000476045 SEC24BO95487 1268 aa8.47□□□□□ -1.05
VPS13D-206ENST00000476045 PLCG2P16885 1265 aa8.47□□□□□ -1.05
VPS13D-206ENST00000476045 ECM2O94769 699 aaPredicted RBP8.44□□□□□ -1.06
VPS13D-206ENST00000476045 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.43□□□□□ -1.06
VPS13D-206ENST00000476045 MKRN3Q13064 507 aaKnown RBP8.43□□□□□ -1.06
VPS13D-206ENST00000476045 ZFP91Q96JP5 570 aaPredicted RBP8.43□□□□□ -1.06
VPS13D-206ENST00000476045 CABP2Q9NPB3 220 aa8.43□□□□□ -1.06
VPS13D-206ENST00000476045 EIF4G1Q04637 1599 aaKnown RBP8.43□□□□□ -1.06
VPS13D-206ENST00000476045 SCUBE2Q9NQ36 999 aa8.42□□□□□ -1.06
VPS13D-206ENST00000476045 TAOK2Q9UL54 1235 aa8.42□□□□□ -1.06
VPS13D-206ENST00000476045 CC2D2AQ9P2K1 1620 aa8.41□□□□□ -1.06
VPS13D-206ENST00000476045 RGL2O15211 777 aa8.41□□□□□ -1.06
VPS13D-206ENST00000476045 GOLGA2Q08379 1002 aa8.41□□□□□ -1.06
VPS13D-206ENST00000476045 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.39□□□□□ -1.07
VPS13D-206ENST00000476045 EFCAB3Q8N7B9 438 aa8.38□□□□□ -1.07
VPS13D-206ENST00000476045 SOX12O15370 315 aa8.37□□□□□ -1.07
VPS13D-206ENST00000476045 BCL11BQ9C0K0 894 aaPredicted RBP8.35□□□□□ -1.07
VPS13D-206ENST00000476045 CECR2Q9BXF3 1484 aa8.34□□□□□ -1.07
VPS13D-206ENST00000476045 L3MBTL3Q96JM7 780 aaPredicted RBP8.34□□□□□ -1.07
VPS13D-206ENST00000476045 TMEM121BQ9BXQ6 578 aaPredicted RBP8.34□□□□□ -1.07
VPS13D-206ENST00000476045 FBXO22Q8NEZ5 403 aa8.33□□□□□ -1.08
VPS13D-206ENST00000476045 MS4A4AQ96JQ5 239 aa8.33□□□□□ -1.08
VPS13D-206ENST00000476045 DPY19L2Q6NUT2 758 aa8.32□□□□□ -1.08
VPS13D-206ENST00000476045 DNAJC5Q9H3Z4 198 aa8.32□□□□□ -1.08
VPS13D-206ENST00000476045 LCE2DQ5TA82 110 aaPredicted RBP8.31□□□□□ -1.08
VPS13D-206ENST00000476045 HS6ST3Q8IZP7 471 aa8.31□□□□□ -1.08
VPS13D-206ENST00000476045 STK25O00506 426 aa8.3□□□□□ -1.08
VPS13D-206ENST00000476045 MFRPQ9BY79 579 aa8.29□□□□□ -1.08
VPS13D-206ENST00000476045 BOLA1Q9Y3E2 137 aa8.29□□□□□ -1.08
VPS13D-206ENST00000476045 STK24Q9Y6E0 443 aa8.29□□□□□ -1.08
VPS13D-206ENST00000476045 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.28□□□□□ -1.08
VPS13D-206ENST00000476045 PHF8Q9UPP1 1060 aa8.28□□□□□ -1.08
VPS13D-206ENST00000476045 NLRP6P59044 892 aa8.27□□□□□ -1.09
VPS13D-206ENST00000476045 SLAIN1Q8ND83 568 aa8.27□□□□□ -1.09
VPS13D-206ENST00000476045 C3orf67Q6ZVT6 689 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms