RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 EVX2Q03828 476 aa9.59□□□□□ -0.87
CSMD3-205ENST00000462254 PKD2Q13563 968 aa9.59□□□□□ -0.87
CSMD3-205ENST00000462254 FAM212AQ96EL1 285 aa9.59□□□□□ -0.87
CSMD3-205ENST00000462254 GSE1Q14687 1217 aa9.55□□□□□ -0.88
CSMD3-205ENST00000462254 ZRANB1Q9UGI0 708 aa9.55□□□□□ -0.88
CSMD3-205ENST00000462254 CCDC61Q9Y6R9 512 aa9.54□□□□□ -0.88
CSMD3-205ENST00000462254 PAK3O75914 559 aaPredicted RBP9.52□□□□□ -0.89
CSMD3-205ENST00000462254 PYGBP11216 843 aa9.51□□□□□ -0.89
CSMD3-205ENST00000462254 PHF12Q96QT6 1004 aa9.5□□□□□ -0.89
CSMD3-205ENST00000462254 ECM2O94769 699 aaPredicted RBP9.48□□□□□ -0.89
CSMD3-205ENST00000462254 ZNF579Q8NAF0 562 aaKnown RBP9.46□□□□□ -0.9
CSMD3-205ENST00000462254 CHRM1P11229 460 aaPredicted RBP9.44□□□□□ -0.9
CSMD3-205ENST00000462254 KIF12Q96FN5 646 aa9.44□□□□□ -0.9
CSMD3-205ENST00000462254 RGL2O15211 777 aa9.43□□□□□ -0.9
CSMD3-205ENST00000462254 MAP3K13O43283 966 aa9.43□□□□□ -0.9
CSMD3-205ENST00000462254 TRIM41Q8WV44 630 aa9.43□□□□□ -0.9
CSMD3-205ENST00000462254 RNF25Q96BH1 459 aaPredicted RBP9.43□□□□□ -0.9
CSMD3-205ENST00000462254 CCDC180Q9P1Z9 1646 aa9.41□□□□□ -0.9
CSMD3-205ENST00000462254 PCDHB13Q9Y5F0 798 aa9.39□□□□□ -0.91
CSMD3-205ENST00000462254 PCDHB8Q9UN66 801 aa9.38□□□□□ -0.91
CSMD3-205ENST00000462254 IFNL1Q8IU54 200 aa9.37□□□□□ -0.91
CSMD3-205ENST00000462254 MS4A3Q96HJ5 214 aa9.36□□□□□ -0.91
CSMD3-205ENST00000462254 GALR2O43603 387 aaPredicted RBP9.35□□□□□ -0.91
CSMD3-205ENST00000462254 RIOK3O14730 519 aaKnown RBP9.34□□□□□ -0.91
CSMD3-205ENST00000462254 GABBR2O75899 941 aa9.34□□□□□ -0.91
CSMD3-205ENST00000462254 SP7Q8TDD2 431 aaPredicted RBP9.34□□□□□ -0.91
CSMD3-205ENST00000462254 SGIP1Q9BQI5 828 aa9.33□□□□□ -0.92
CSMD3-205ENST00000462254 TRPC6Q9Y210 931 aa9.33□□□□□ -0.92
CSMD3-205ENST00000462254 ZNF467Q7Z7K2 595 aaPredicted RBP9.32□□□□□ -0.92
CSMD3-205ENST00000462254 DCAF8L2P0C7V8 631 aa9.31□□□□□ -0.92
CSMD3-205ENST00000462254 CLCN6P51797 869 aa9.28□□□□□ -0.92
CSMD3-205ENST00000462254 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.26□□□□□ -0.93
CSMD3-205ENST00000462254 VGFO15240 615 aaPredicted RBP9.26□□□□□ -0.93
CSMD3-205ENST00000462254 PSEN1P49768 467 aa9.26□□□□□ -0.93
CSMD3-205ENST00000462254 ZFP91Q96JP5 570 aaPredicted RBP9.26□□□□□ -0.93
CSMD3-205ENST00000462254 PDAP1Q13442 181 aaKnown RBP9.25□□□□□ -0.93
CSMD3-205ENST00000462254 CHGAP10645 457 aaKnown RBP9.23□□□□□ -0.93
CSMD3-205ENST00000462254 BMP2KQ9NSY1 1161 aaPredicted RBP9.22□□□□□ -0.93
CSMD3-205ENST00000462254 STK25O00506 426 aa9.21□□□□□ -0.94
CSMD3-205ENST00000462254 TMEM106CQ9BVX2 250 aa9.21□□□□□ -0.94
CSMD3-205ENST00000462254 TTLL13PA6NNM8 815 aa9.2□□□□□ -0.94
CSMD3-205ENST00000462254 BCL11BQ9C0K0 894 aaPredicted RBP9.2□□□□□ -0.94
CSMD3-205ENST00000462254 TAOK2Q9UL54 1235 aa9.2□□□□□ -0.94
CSMD3-205ENST00000462254 TIE1P35590 1138 aa9.19□□□□□ -0.94
CSMD3-205ENST00000462254 ATMINO43313 823 aaPredicted RBP9.18□□□□□ -0.94
CSMD3-205ENST00000462254 POTEIP0CG38 1075 aa9.18□□□□□ -0.94
CSMD3-205ENST00000462254 ATN1P54259 1190 aaPredicted RBP9.18□□□□□ -0.94
CSMD3-205ENST00000462254 HS6ST3Q8IZP7 471 aa9.18□□□□□ -0.94
CSMD3-205ENST00000462254 STK24Q9Y6E0 443 aa9.18□□□□□ -0.94
CSMD3-205ENST00000462254 ASTLQ6HA08 431 aaPredicted RBP9.17□□□□□ -0.94
CSMD3-205ENST00000462254 DCBLD2Q96PD2 775 aa9.17□□□□□ -0.94
CSMD3-205ENST00000462254 PELP1Q8IZL8 1130 aaKnown RBP9.16□□□□□ -0.94
CSMD3-205ENST00000462254 CABP2Q9NPB3 220 aa9.15□□□□□ -0.94
CSMD3-205ENST00000462254 TRIM35Q9UPQ4 493 aa9.14□□□□□ -0.95
CSMD3-205ENST00000462254 NKX1-1Q15270 411 aaPredicted RBP9.12□□□□□ -0.95
CSMD3-205ENST00000462254 EFCAB3Q8N7B9 438 aa9.11□□□□□ -0.95
CSMD3-205ENST00000462254 BBXQ8WY36 941 aaPredicted RBP9.08□□□□□ -0.96
CSMD3-205ENST00000462254 DNAJC5Q9H3Z4 198 aa9.08□□□□□ -0.96
CSMD3-205ENST00000462254 GOLGA2Q08379 1002 aa9.07□□□□□ -0.96
CSMD3-205ENST00000462254 MKRN3Q13064 507 aaKnown RBP9.05□□□□□ -0.96
CSMD3-205ENST00000462254 MFRPQ9BY79 579 aa9.05□□□□□ -0.96
CSMD3-205ENST00000462254 PHF8Q9UPP1 1060 aa9.04□□□□□ -0.96
CSMD3-205ENST00000462254 SOX12O15370 315 aa9.02□□□□□ -0.97
CSMD3-205ENST00000462254 COLQQ9Y215 455 aaPredicted RBP9.02□□□□□ -0.97
CSMD3-205ENST00000462254 POTEFA5A3E0 1075 aa9.01□□□□□ -0.97
CSMD3-205ENST00000462254 GTPBP6O43824 516 aaPredicted RBP9.01□□□□□ -0.97
CSMD3-205ENST00000462254 IRX5P78411 483 aaPredicted RBP9.01□□□□□ -0.97
CSMD3-205ENST00000462254 IER5LQ5T953 404 aa9.01□□□□□ -0.97
CSMD3-205ENST00000462254 FBXO22Q8NEZ5 403 aa9.01□□□□□ -0.97
CSMD3-205ENST00000462254 SLC39A7Q92504 469 aa9.01□□□□□ -0.97
CSMD3-205ENST00000462254 MS4A4AQ96JQ5 239 aa9.01□□□□□ -0.97
CSMD3-205ENST00000462254 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.01□□□□□ -0.97
CSMD3-205ENST00000462254 METRNQ9UJH8 293 aa9.01□□□□□ -0.97
CSMD3-205ENST00000462254 C7P10643 843 aa9□□□□□ -0.97
CSMD3-205ENST00000462254 ILDR1Q86SU0 546 aaPredicted RBP9□□□□□ -0.97
CSMD3-205ENST00000462254 ZBTB4Q9P1Z0 1013 aaPredicted RBP9□□□□□ -0.97
CSMD3-205ENST00000462254 PAXIP1Q6ZW49 1069 aaPredicted RBP8.99□□□□□ -0.97
CSMD3-205ENST00000462254 PDCD7Q8N8D1 485 aaKnown RBP8.99□□□□□ -0.97
CSMD3-205ENST00000462254 NLRP6P59044 892 aa8.98□□□□□ -0.97
CSMD3-205ENST00000462254 DPY19L2Q6NUT2 758 aa8.98□□□□□ -0.97
CSMD3-205ENST00000462254 CFAP44Q96MT7 982 aa8.97□□□□□ -0.97
CSMD3-205ENST00000462254 OCEL1Q9H607 264 aa8.97□□□□□ -0.97
CSMD3-205ENST00000462254 SEC24BO95487 1268 aa8.96□□□□□ -0.98
CSMD3-205ENST00000462254 SPRYD3Q8NCJ5 442 aa8.96□□□□□ -0.98
CSMD3-205ENST00000462254 PPP1R37O75864 691 aa8.95□□□□□ -0.98
CSMD3-205ENST00000462254 PLCG2P16885 1265 aa8.94□□□□□ -0.98
CSMD3-205ENST00000462254 PLCB2Q00722 1185 aa8.93□□□□□ -0.98
CSMD3-205ENST00000462254 ABCC9O60706 1549 aa8.91□□□□□ -0.98
CSMD3-205ENST00000462254 POTEB2H3BUK9 544 aa8.91□□□□□ -0.98
CSMD3-205ENST00000462254 ZCCHC6Q5VYS8 1495 aaKnown RBP8.9□□□□□ -0.98
CSMD3-205ENST00000462254 RYDENQ9NUL5 291 aaKnown RBP8.9□□□□□ -0.98
CSMD3-205ENST00000462254 BCANQ96GW7 911 aa8.89□□□□□ -0.99
CSMD3-205ENST00000462254 POTEJP0CG39 1038 aa8.88□□□□□ -0.99
CSMD3-205ENST00000462254 BOLA1Q9Y3E2 137 aa8.85□□□□□ -0.99
CSMD3-205ENST00000462254 PRKCSHP14314 528 aaPredicted RBP8.84□□□□□ -0.99
CSMD3-205ENST00000462254 MICALL2Q8IY33 904 aa8.84□□□□□ -0.99
CSMD3-205ENST00000462254 TSHZ2Q9NRE2 1034 aa8.84□□□□□ -0.99
CSMD3-205ENST00000462254 L3MBTL3Q96JM7 780 aaPredicted RBP8.83□□□□□ -1
CSMD3-205ENST00000462254 TMEM121BQ9BXQ6 578 aaPredicted RBP8.83□□□□□ -1
CSMD3-205ENST00000462254 CADPS2Q86UW7 1296 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms