RNA–Protein interactions for RNA: ENST00000461221.5

BRCA1-205, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 5,693 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-205ENST00000461221 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.78□□□□□ -0.521e-6■■■□□ 18.6
BRCA1-205ENST00000461221 PPM1GO15355 546 aaPredicted RBP11.77□□□□□ -0.52
BRCA1-205ENST00000461221 NRDCO43847 1150 aa11.75□□□□□ -0.53
BRCA1-205ENST00000461221 TSPY4P0CV99 314 aa11.75□□□□□ -0.53
BRCA1-205ENST00000461221 TSPY10P0CW01 314 aa11.75□□□□□ -0.53
BRCA1-205ENST00000461221 CFAP53Q96M91 514 aa11.73□□□□□ -0.53
BRCA1-205ENST00000461221 KDM2AQ9Y2K7 1162 aa11.73□□□□□ -0.53
BRCA1-205ENST00000461221 ZBTB7CA1YPR0 619 aa11.73□□□□□ -0.53
BRCA1-205ENST00000461221 NAP1L5Q96NT1 182 aaPredicted RBP11.73□□□□□ -0.53
BRCA1-205ENST00000461221 IRX6P78412 446 aaPredicted RBP11.71□□□□□ -0.53
BRCA1-205ENST00000461221 ABCC9O60706 1549 aa11.71□□□□□ -0.53
BRCA1-205ENST00000461221 EIF4G2P78344 907 aaKnown RBP eCLIP11.71□□□□□ -0.54
BRCA1-205ENST00000461221 C14orf37Q86TY3 774 aa11.71□□□□□ -0.54
BRCA1-205ENST00000461221 CHIC2Q9UKJ5 165 aa11.71□□□□□ -0.54
BRCA1-205ENST00000461221 TULP1O00294 542 aaPredicted RBP11.69□□□□□ -0.54
BRCA1-205ENST00000461221 CHMP4BQ9H444 224 aaKnown RBP11.69□□□□□ -0.54
BRCA1-205ENST00000461221 FTSJ3Q8IY81 847 aaKnown RBP11.69□□□□□ -0.54
BRCA1-205ENST00000461221 PPP1R15AO75807 674 aaPredicted RBP11.68□□□□□ -0.54
BRCA1-205ENST00000461221 CDCA8Q53HL2 280 aa11.68□□□□□ -0.54
BRCA1-205ENST00000461221 CHAF1AQ13111 956 aaPredicted RBP11.67□□□□□ -0.54
BRCA1-205ENST00000461221 L1TD1Q5T7N2 865 aaKnown RBP11.66□□□□□ -0.54
BRCA1-205ENST00000461221 PLCB2Q00722 1185 aa11.65□□□□□ -0.54
BRCA1-205ENST00000461221 HAP1P54257 671 aaPredicted RBP11.65□□□□□ -0.54
BRCA1-205ENST00000461221 TPRNQ4KMQ1 711 aa11.64□□□□□ -0.55
BRCA1-205ENST00000461221 MTUS2Q5JR59 1369 aa11.64□□□□□ -0.55
BRCA1-205ENST00000461221 DCAF1Q9Y4B6 1507 aa11.63□□□□□ -0.55
BRCA1-205ENST00000461221 MS4A1P11836 297 aa11.63□□□□□ -0.55
BRCA1-205ENST00000461221 HSP90AB1P08238 724 aaKnown RBP11.63□□□□□ -0.55
BRCA1-205ENST00000461221 FGD1P98174 961 aa11.62□□□□□ -0.55
BRCA1-205ENST00000461221 MAPK8IP3Q9UPT6 1336 aa11.62□□□□□ -0.55
BRCA1-205ENST00000461221 KNSTRNQ9Y448 316 aa11.61□□□□□ -0.55
BRCA1-205ENST00000461221 GOLGA6L4A6NEF3 574 aa11.6□□□□□ -0.55
BRCA1-205ENST00000461221 MIER1Q8N108 512 aa11.6□□□□□ -0.55
BRCA1-205ENST00000461221 NUDCQ9Y266 331 aa11.6□□□□□ -0.55
BRCA1-205ENST00000461221 OS9Q13438 667 aaPredicted RBP11.58□□□□□ -0.56
BRCA1-205ENST00000461221 PLEKHG5O94827 1062 aa11.58□□□□□ -0.56
BRCA1-205ENST00000461221 KCNJ4P48050 445 aa11.58□□□□□ -0.56
BRCA1-205ENST00000461221 MSNP26038 577 aaKnown RBP11.58□□□□□ -0.56
BRCA1-205ENST00000461221 NPHP1O15259 732 aa11.57□□□□□ -0.56
BRCA1-205ENST00000461221 NOP58Q9Y2X3 529 aaKnown RBP11.57□□□□□ -0.56
BRCA1-205ENST00000461221 CFAP44Q96MT7 982 aa11.57□□□□□ -0.56
BRCA1-205ENST00000461221 LAS1LQ9Y4W2 734 aaKnown RBP11.56□□□□□ -0.56
BRCA1-205ENST00000461221 HSCBQ8IWL3 235 aa11.56□□□□□ -0.56
BRCA1-205ENST00000461221 PNNQ9H307 717 aaKnown RBP11.56□□□□□ -0.56
BRCA1-205ENST00000461221 PPP4R2Q9NY27 417 aa11.56□□□□□ -0.56
BRCA1-205ENST00000461221 GOLGA2Q08379 1002 aa11.55□□□□□ -0.56
BRCA1-205ENST00000461221 MCCP23508 829 aa11.55□□□□□ -0.56
BRCA1-205ENST00000461221 NAP1L2Q9ULW6 460 aaPredicted RBP11.55□□□□□ -0.56
BRCA1-205ENST00000461221 CLSTN1O94985 981 aa11.53□□□□□ -0.56
BRCA1-205ENST00000461221 KIAA2012Q0VF49 1180 aa11.53□□□□□ -0.56
BRCA1-205ENST00000461221 RSF1Q96T23 1441 aaPredicted RBP11.53□□□□□ -0.56
BRCA1-205ENST00000461221 RGS3P49796 1198 aa11.53□□□□□ -0.56
BRCA1-205ENST00000461221 TAOK2Q9UL54 1235 aa11.53□□□□□ -0.56
BRCA1-205ENST00000461221 DRC7Q8IY82 874 aa11.53□□□□□ -0.56
BRCA1-205ENST00000461221 HIRIP3Q9BW71 556 aaPredicted RBP11.52□□□□□ -0.57
BRCA1-205ENST00000461221 PTMSP20962 102 aa11.52□□□□□ -0.57
BRCA1-205ENST00000461221 RTN4Q9NQC3 1192 aaKnown RBP11.51□□□□□ -0.57
BRCA1-205ENST00000461221 SUPT16HQ9Y5B9 1047 aaKnown RBP11.51□□□□□ -0.57
BRCA1-205ENST00000461221 FRAT1Q92837 279 aaPredicted RBP11.5□□□□□ -0.57
BRCA1-205ENST00000461221 RRP7BPQ9NSQ0 103 aa11.5□□□□□ -0.57
BRCA1-205ENST00000461221 NEUROD2Q15784 382 aa11.49□□□□□ -0.57
BRCA1-205ENST00000461221 CHMP7Q8WUX9 453 aaPredicted RBP11.49□□□□□ -0.57
BRCA1-205ENST00000461221 CARD11Q9BXL7 1154 aa11.49□□□□□ -0.57
BRCA1-205ENST00000461221 RGL3Q3MIN7 710 aa11.48□□□□□ -0.57
BRCA1-205ENST00000461221 PLEKHD1A6NEE1 506 aa11.47□□□□□ -0.57
BRCA1-205ENST00000461221 GNL2Q13823 731 aaKnown RBP11.47□□□□□ -0.57
BRCA1-205ENST00000461221 NOC3LQ8WTT2 800 aaKnown RBP11.46□□□□□ -0.57
BRCA1-205ENST00000461221 POGKQ9P215 609 aa11.46□□□□□ -0.57
BRCA1-205ENST00000461221 NCBP3Q53F19 620 aaKnown RBP11.46□□□□□ -0.57
BRCA1-205ENST00000461221 SENP3Q9H4L4 574 aaPredicted RBP11.46□□□□□ -0.57
BRCA1-205ENST00000461221 HTATSF1O43719 755 aaKnown RBP11.45□□□□□ -0.58
BRCA1-205ENST00000461221 CLIP1P30622 1438 aa11.45□□□□□ -0.58
BRCA1-205ENST00000461221 ARID4BQ4LE39 1312 aaPredicted RBP11.44□□□□□ -0.58
BRCA1-205ENST00000461221 LMOD2Q6P5Q4 547 aa11.43□□□□□ -0.58
BRCA1-205ENST00000461221 GBP4Q96PP9 640 aa11.43□□□□□ -0.58
BRCA1-205ENST00000461221 USP35Q9P2H5 1018 aa11.43□□□□□ -0.58
BRCA1-205ENST00000461221 TPM4P67936 248 aa11.42□□□□□ -0.58
BRCA1-205ENST00000461221 U2SURPO15042 1029 aaKnown RBP11.42□□□□□ -0.58
BRCA1-205ENST00000461221 KCNH8Q96L42 1107 aa11.42□□□□□ -0.58
BRCA1-205ENST00000461221 TNNT3P45378 269 aaPredicted RBP11.42□□□□□ -0.58
BRCA1-205ENST00000461221 ISY1Q9ULR0 285 aaKnown RBP11.42□□□□□ -0.58
BRCA1-205ENST00000461221 AMER1Q5JTC6 1135 aaPredicted RBP11.42□□□□□ -0.58
BRCA1-205ENST00000461221 SYAP1Q96A49 352 aaPredicted RBP11.41□□□□□ -0.58
BRCA1-205ENST00000461221 GOLGA6L1Q8N7Z2 621 aa11.41□□□□□ -0.58
BRCA1-205ENST00000461221 KIAA1211Q6ZU35 1233 aa11.4□□□□□ -0.58
BRCA1-205ENST00000461221 CCDC34Q96HJ3 373 aa11.4□□□□□ -0.58
BRCA1-205ENST00000461221 SCRIBQ14160 1630 aa11.38□□□□□ -0.59
BRCA1-205ENST00000461221 CFDP1Q9UEE9 299 aaPredicted RBP11.38□□□□□ -0.59
BRCA1-205ENST00000461221 SENP3-EIF4A1A0A087X0R7 540 aa11.37□□□□□ -0.59
BRCA1-205ENST00000461221 A0A0U1RQG5 324 aaPredicted RBP11.37□□□□□ -0.59
BRCA1-205ENST00000461221 DEKP35659 375 aaKnown RBP11.37□□□□□ -0.59
BRCA1-205ENST00000461221 TMF1P82094 1093 aa11.37□□□□□ -0.59
BRCA1-205ENST00000461221 CC2D1BQ5T0F9 858 aaKnown RBP11.37□□□□□ -0.59
BRCA1-205ENST00000461221 IPO8O15397 1037 aaKnown RBP11.36□□□□□ -0.59
BRCA1-205ENST00000461221 PRM3Q9NNZ6 103 aa11.36□□□□□ -0.59
BRCA1-205ENST00000461221 ZCCHC6Q5VYS8 1495 aaKnown RBP11.35□□□□□ -0.59
BRCA1-205ENST00000461221 HDGFP51858 240 aaKnown RBP11.35□□□□□ -0.59
BRCA1-205ENST00000461221 RTF1Q92541 710 aaKnown RBP11.35□□□□□ -0.59
BRCA1-205ENST00000461221 CSPP1Q1MSJ5 1256 aa11.34□□□□□ -0.59
BRCA1-205ENST00000461221 B4GALNT3Q6L9W6 998 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms