RNA–Protein interactions for RNA: ENST00000460064.1

CCDC50-203, Transcript of coiled-coil domain containing 50, humanhuman

TSL 2

Gene CCDC50, Length 420 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-203ENST00000460064 CFAP44Q96MT7 982 aa13.04□□□□□ -0.32
CCDC50-203ENST00000460064 RASEFQ8IZ41 740 aa12.97□□□□□ -0.33
CCDC50-203ENST00000460064 SPRYD3Q8NCJ5 442 aa12.97□□□□□ -0.33
CCDC50-203ENST00000460064 RNF25Q96BH1 459 aaPredicted RBP12.96□□□□□ -0.33
CCDC50-203ENST00000460064 VSIG10Q8N0Z9 540 aa12.94□□□□□ -0.34
CCDC50-203ENST00000460064 RIOK3O14730 519 aaKnown RBP12.93□□□□□ -0.34
CCDC50-203ENST00000460064 CHADLQ6NUI6 762 aa12.93□□□□□ -0.34
CCDC50-203ENST00000460064 TAOK2Q9UL54 1235 aa12.93□□□□□ -0.34
CCDC50-203ENST00000460064 HS6ST3Q8IZP7 471 aa12.91□□□□□ -0.34
CCDC50-203ENST00000460064 CHRM1P11229 460 aaPredicted RBP12.9□□□□□ -0.34
CCDC50-203ENST00000460064 PYGBP11216 843 aa12.87□□□□□ -0.35
CCDC50-203ENST00000460064 VGFO15240 615 aaPredicted RBP12.84□□□□□ -0.35
CCDC50-203ENST00000460064 FARP1Q9Y4F1 1045 aaPredicted RBP12.84□□□□□ -0.35
CCDC50-203ENST00000460064 TSPYL2Q9H2G4 693 aaPredicted RBP12.82□□□□□ -0.36
CCDC50-203ENST00000460064 STK25O00506 426 aa12.81□□□□□ -0.36
CCDC50-203ENST00000460064 PRKAR2AP13861 404 aaKnown RBP12.81□□□□□ -0.36
CCDC50-203ENST00000460064 TSHZ2Q9NRE2 1034 aa12.81□□□□□ -0.36
CCDC50-203ENST00000460064 DNAJC5Q9H3Z4 198 aa12.8□□□□□ -0.36
CCDC50-203ENST00000460064 KDM2AQ9Y2K7 1162 aa12.8□□□□□ -0.36
CCDC50-203ENST00000460064 FXR2P51116 673 aaKnown RBP eCLIP12.76□□□□□ -0.37
CCDC50-203ENST00000460064 SGIP1Q9BQI5 828 aa12.75□□□□□ -0.37
CCDC50-203ENST00000460064 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.74□□□□□ -0.37
CCDC50-203ENST00000460064 ZFP91Q96JP5 570 aaPredicted RBP12.74□□□□□ -0.37
CCDC50-203ENST00000460064 STK24Q9Y6E0 443 aa12.74□□□□□ -0.37
CCDC50-203ENST00000460064 NKX1-1Q15270 411 aaPredicted RBP12.73□□□□□ -0.37
CCDC50-203ENST00000460064 BCANQ96GW7 911 aa12.73□□□□□ -0.37
CCDC50-203ENST00000460064 BCL11BQ9C0K0 894 aaPredicted RBP12.72□□□□□ -0.37
CCDC50-203ENST00000460064 CHRDL2Q6WN34 429 aa12.7□□□□□ -0.38
CCDC50-203ENST00000460064 GTPBP6O43824 516 aaPredicted RBP12.67□□□□□ -0.38
CCDC50-203ENST00000460064 ZNF467Q7Z7K2 595 aaPredicted RBP12.67□□□□□ -0.38
CCDC50-203ENST00000460064 PAK3O75914 559 aaPredicted RBP12.65□□□□□ -0.38
CCDC50-203ENST00000460064 PIP4P2Q8N4L2 257 aa12.65□□□□□ -0.38
CCDC50-203ENST00000460064 CCDC61Q9Y6R9 512 aa12.64□□□□□ -0.39
CCDC50-203ENST00000460064 PCDHB8Q9UN66 801 aa12.62□□□□□ -0.39
CCDC50-203ENST00000460064 PCDHB13Q9Y5F0 798 aa12.62□□□□□ -0.39
CCDC50-203ENST00000460064 RYDENQ9NUL5 291 aaKnown RBP12.6□□□□□ -0.39
CCDC50-203ENST00000460064 PDAP1Q13442 181 aaKnown RBP12.59□□□□□ -0.39
CCDC50-203ENST00000460064 ZNF579Q8NAF0 562 aaKnown RBP12.56□□□□□ -0.4
CCDC50-203ENST00000460064 PSEN1P49768 467 aa12.54□□□□□ -0.4
CCDC50-203ENST00000460064 MAP3K13O43283 966 aa12.51□□□□□ -0.41
CCDC50-203ENST00000460064 IFNL1Q8IU54 200 aa12.5□□□□□ -0.41
CCDC50-203ENST00000460064 KIF12Q96FN5 646 aa12.5□□□□□ -0.41
CCDC50-203ENST00000460064 ZRANB1Q9UGI0 708 aa12.5□□□□□ -0.41
CCDC50-203ENST00000460064 CD44P16070 742 aaKnown RBP12.46□□□□□ -0.41
CCDC50-203ENST00000460064 PRKCSHP14314 528 aaPredicted RBP12.4□□□□□ -0.42
CCDC50-203ENST00000460064 NBR1Q14596 966 aa12.4□□□□□ -0.42
CCDC50-203ENST00000460064 PHF12Q96QT6 1004 aa12.39□□□□□ -0.43
CCDC50-203ENST00000460064 MFRPQ9BY79 579 aa12.39□□□□□ -0.43
CCDC50-203ENST00000460064 CABP2Q9NPB3 220 aa12.39□□□□□ -0.43
CCDC50-203ENST00000460064 EFCAB3Q8N7B9 438 aa12.37□□□□□ -0.43
CCDC50-203ENST00000460064 SOX12O15370 315 aa12.34□□□□□ -0.43
CCDC50-203ENST00000460064 NLRP6P59044 892 aa12.33□□□□□ -0.44
CCDC50-203ENST00000460064 TPRNQ4KMQ1 711 aa12.32□□□□□ -0.44
CCDC50-203ENST00000460064 CADPS2Q86UW7 1296 aa12.31□□□□□ -0.44
CCDC50-203ENST00000460064 WDR70Q9NW82 654 aa12.31□□□□□ -0.44
CCDC50-203ENST00000460064 C19orf67A6NJJ6 358 aa12.3□□□□□ -0.44
CCDC50-203ENST00000460064 PHF8Q9UPP1 1060 aa12.3□□□□□ -0.44
CCDC50-203ENST00000460064 PPP1R37O75864 691 aa12.28□□□□□ -0.44
CCDC50-203ENST00000460064 FBXO22Q8NEZ5 403 aa12.28□□□□□ -0.44
CCDC50-203ENST00000460064 GOLGA2Q08379 1002 aa12.27□□□□□ -0.45
CCDC50-203ENST00000460064 TMEM106CQ9BVX2 250 aa12.27□□□□□ -0.45
CCDC50-203ENST00000460064 MS4A3Q96HJ5 214 aa12.25□□□□□ -0.45
CCDC50-203ENST00000460064 TRPC6Q9Y210 931 aa12.23□□□□□ -0.45
CCDC50-203ENST00000460064 P3H3Q8IVL6 736 aa12.22□□□□□ -0.45
CCDC50-203ENST00000460064 MKRN3Q13064 507 aaKnown RBP12.2□□□□□ -0.46
CCDC50-203ENST00000460064 HAX1O00165 279 aa12.16□□□□□ -0.46
CCDC50-203ENST00000460064 TIE1P35590 1138 aa12.15□□□□□ -0.46
CCDC50-203ENST00000460064 MS4A4AQ96JQ5 239 aa12.15□□□□□ -0.46
CCDC50-203ENST00000460064 KCNV2Q8TDN2 545 aa12.13□□□□□ -0.47
CCDC50-203ENST00000460064 TTLL13PA6NNM8 815 aa12.12□□□□□ -0.47
CCDC50-203ENST00000460064 GALR2O43603 387 aaPredicted RBP12.09□□□□□ -0.47
CCDC50-203ENST00000460064 PDE4AP27815 886 aa12.09□□□□□ -0.47
CCDC50-203ENST00000460064 BMP2KQ9NSY1 1161 aaPredicted RBP12.09□□□□□ -0.47
CCDC50-203ENST00000460064 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.08□□□□□ -0.481e-10■□□□□ 11.1
CCDC50-203ENST00000460064 E2F4Q16254 413 aa12.07□□□□□ -0.48
CCDC50-203ENST00000460064 LARP6Q9BRS8 491 aaKnown RBP12.07□□□□□ -0.48
CCDC50-203ENST00000460064 CLCN6P51797 869 aa12.06□□□□□ -0.48
CCDC50-203ENST00000460064 EVX2Q03828 476 aa12.06□□□□□ -0.48
CCDC50-203ENST00000460064 TRIM35Q9UPQ4 493 aa12.05□□□□□ -0.48
CCDC50-203ENST00000460064 NCKAP5LQ9HCH0 1330 aa12.05□□□□□ -0.48
CCDC50-203ENST00000460064 ARHGEF1Q92888 912 aaKnown RBP12.03□□□□□ -0.48
CCDC50-203ENST00000460064 ILDR1Q86SU0 546 aaPredicted RBP12□□□□□ -0.49
CCDC50-203ENST00000460064 DDX27Q96GQ7 796 aaKnown RBP11.99□□□□□ -0.49
CCDC50-203ENST00000460064 CRISPLD2Q9H0B8 497 aa11.99□□□□□ -0.49
CCDC50-203ENST00000460064 MFSD10Q14728 455 aa11.97□□□□□ -0.49
CCDC50-203ENST00000460064 ATN1P54259 1190 aaPredicted RBP11.96□□□□□ -0.49
CCDC50-203ENST00000460064 DPY19L2Q6NUT2 758 aa11.96□□□□□ -0.49
CCDC50-203ENST00000460064 TULP1O00294 542 aaPredicted RBP11.95□□□□□ -0.5
CCDC50-203ENST00000460064 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.95□□□□□ -0.5
CCDC50-203ENST00000460064 ATMINO43313 823 aaPredicted RBP11.92□□□□□ -0.5
CCDC50-203ENST00000460064 LMOD2Q6P5Q4 547 aa11.92□□□□□ -0.5
CCDC50-203ENST00000460064 SEMA3EO15041 775 aa11.91□□□□□ -0.5
CCDC50-203ENST00000460064 GPHNQ9NQX3 736 aaPredicted RBP11.91□□□□□ -0.5
CCDC50-203ENST00000460064 ASTLQ6HA08 431 aaPredicted RBP11.9□□□□□ -0.5
CCDC50-203ENST00000460064 OCEL1Q9H607 264 aa11.89□□□□□ -0.51
CCDC50-203ENST00000460064 PDCD7Q8N8D1 485 aaKnown RBP11.88□□□□□ -0.51
CCDC50-203ENST00000460064 IRX5P78411 483 aaPredicted RBP11.87□□□□□ -0.51
CCDC50-203ENST00000460064 CAMK2BQ13554 666 aa11.87□□□□□ -0.51
CCDC50-203ENST00000460064 MICALL2Q8IY33 904 aa11.87□□□□□ -0.51
CCDC50-203ENST00000460064 GABBR2O75899 941 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms