RNA–Protein interactions for RNA: ENST00000455362.1

HMGB1P4-201, Transcript of high mobility group box 1 pseudogene 4, humanhuman

BASIC

Gene HMGB1P4, Length 567 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P4-201ENST00000455362 KLHL34Q8N239 644 aa9.16□□□□□ -0.94
HMGB1P4-201ENST00000455362 REM2Q8IYK8 340 aaPredicted RBP9.15□□□□□ -0.94
HMGB1P4-201ENST00000455362 SPOCK2Q92563 424 aa9.13□□□□□ -0.95
HMGB1P4-201ENST00000455362 NBR1Q14596 966 aa9.12□□□□□ -0.95
HMGB1P4-201ENST00000455362 BICRAQ9NZM4 1560 aa9.12□□□□□ -0.95
HMGB1P4-201ENST00000455362 ECM2O94769 699 aaPredicted RBP9.11□□□□□ -0.95
HMGB1P4-201ENST00000455362 PABPN1Q86U42 306 aaKnown RBP eCLIP9.1□□□□□ -0.95
HMGB1P4-201ENST00000455362 HOMEZQ8IX15 550 aa9.09□□□□□ -0.95
HMGB1P4-201ENST00000455362 SPRYD3Q8NCJ5 442 aa9.07□□□□□ -0.96
HMGB1P4-201ENST00000455362 STAG3Q9UJ98 1225 aa9.07□□□□□ -0.96
HMGB1P4-201ENST00000455362 PITPNM1O00562 1244 aa9.05□□□□□ -0.96
HMGB1P4-201ENST00000455362 NPM1P06748 294 aaKnown RBP eCLIP9.05□□□□□ -0.96
HMGB1P4-201ENST00000455362 TSHZ2Q9NRE2 1034 aa9.05□□□□□ -0.96
HMGB1P4-201ENST00000455362 PLCD3Q8N3E9 789 aa9.03□□□□□ -0.96
HMGB1P4-201ENST00000455362 CECR2Q9BXF3 1484 aa8.99□□□□□ -0.97
HMGB1P4-201ENST00000455362 SUPT5HO00267 1087 aaKnown RBP8.98□□□□□ -0.97
HMGB1P4-201ENST00000455362 TMEM132AQ24JP5 1023 aa8.98□□□□□ -0.97
HMGB1P4-201ENST00000455362 CHRDL2Q6WN34 429 aa8.97□□□□□ -0.97
HMGB1P4-201ENST00000455362 C14orf37Q86TY3 774 aa8.97□□□□□ -0.97
HMGB1P4-201ENST00000455362 SPDYE1Q8NFV5 336 aaPredicted RBP8.97□□□□□ -0.97
HMGB1P4-201ENST00000455362 PLEKHG5O94827 1062 aa8.96□□□□□ -0.98
HMGB1P4-201ENST00000455362 MIER1Q8N108 512 aa8.96□□□□□ -0.98
HMGB1P4-201ENST00000455362 FXR2P51116 673 aaKnown RBP eCLIP8.94□□□□□ -0.98
HMGB1P4-201ENST00000455362 RSF1Q96T23 1441 aaPredicted RBP8.94□□□□□ -0.98
HMGB1P4-201ENST00000455362 ZBTB47Q9UFB7 747 aaPredicted RBP8.93□□□□□ -0.98
HMGB1P4-201ENST00000455362 MROH2BQ7Z745 1585 aa8.93□□□□□ -0.98
HMGB1P4-201ENST00000455362 BAZ1AQ9NRL2 1556 aaPredicted RBP8.92□□□□□ -0.98
HMGB1P4-201ENST00000455362 RGL2O15211 777 aa8.91□□□□□ -0.98
HMGB1P4-201ENST00000455362 CLEC11AQ9Y240 323 aa8.91□□□□□ -0.98
HMGB1P4-201ENST00000455362 SMARCA4P51532 1647 aa8.9□□□□□ -0.99
HMGB1P4-201ENST00000455362 PIP4P2Q8N4L2 257 aa8.89□□□□□ -0.99
HMGB1P4-201ENST00000455362 CIZ1Q9ULV3 898 aaPredicted RBP8.89□□□□□ -0.99
HMGB1P4-201ENST00000455362 DNAJC5Q9H3Z4 198 aa8.88□□□□□ -0.99
HMGB1P4-201ENST00000455362 CHGAP10645 457 aaKnown RBP8.87□□□□□ -0.99
HMGB1P4-201ENST00000455362 TRIM41Q8WV44 630 aa8.87□□□□□ -0.99
HMGB1P4-201ENST00000455362 PRR29P0C7W0 189 aa8.85□□□□□ -0.99
HMGB1P4-201ENST00000455362 WIZO95785 1651 aa8.85□□□□□ -0.99
HMGB1P4-201ENST00000455362 CREBZFQ9NS37 354 aa8.84□□□□□ -0.99
HMGB1P4-201ENST00000455362 EIF4G1Q04637 1599 aaKnown RBP8.82□□□□□ -1
HMGB1P4-201ENST00000455362 RANGAP1P46060 587 aaPredicted RBP8.82□□□□□ -1
HMGB1P4-201ENST00000455362 MNX1P50219 401 aaPredicted RBP8.81□□□□□ -1
HMGB1P4-201ENST00000455362 PEG3Q9GZU2 1588 aa8.8□□□□□ -1
HMGB1P4-201ENST00000455362 CHADLQ6NUI6 762 aa8.79□□□□□ -1
HMGB1P4-201ENST00000455362 ATAD2BQ9ULI0 1458 aa8.78□□□□□ -1
HMGB1P4-201ENST00000455362 PRKAR2AP13861 404 aaKnown RBP8.77□□□□□ -1.01
HMGB1P4-201ENST00000455362 SMARCA2P51531 1590 aa8.77□□□□□ -1.01
HMGB1P4-201ENST00000455362 HS6ST3Q8IZP7 471 aa8.76□□□□□ -1.01
HMGB1P4-201ENST00000455362 GSE1Q14687 1217 aa8.75□□□□□ -1.01
HMGB1P4-201ENST00000455362 TOP2AP11388 1531 aaKnown RBP8.74□□□□□ -1.01
HMGB1P4-201ENST00000455362 NCAPD3P42695 1498 aa8.73□□□□□ -1.01
HMGB1P4-201ENST00000455362 CC2D2AQ9P2K1 1620 aa8.72□□□□□ -1.01
HMGB1P4-201ENST00000455362 SP7Q8TDD2 431 aaPredicted RBP8.72□□□□□ -1.01
HMGB1P4-201ENST00000455362 PODXL2Q9NZ53 605 aa8.72□□□□□ -1.01
HMGB1P4-201ENST00000455362 BAZ1BQ9UIG0 1483 aaKnown RBP8.71□□□□□ -1.01
HMGB1P4-201ENST00000455362 FARP1Q9Y4F1 1045 aaPredicted RBP8.7□□□□□ -1.02
HMGB1P4-201ENST00000455362 HMGXB3Q12766 1538 aa8.69□□□□□ -1.02
HMGB1P4-201ENST00000455362 CCDC88BA6NC98 1476 aa8.68□□□□□ -1.02
HMGB1P4-201ENST00000455362 RIOK3O14730 519 aaKnown RBP8.64□□□□□ -1.03
HMGB1P4-201ENST00000455362 EVX2Q03828 476 aa8.64□□□□□ -1.03
HMGB1P4-201ENST00000455362 DCAF8Q5TAQ9 597 aa8.64□□□□□ -1.03
HMGB1P4-201ENST00000455362 C19orf67A6NJJ6 358 aa8.62□□□□□ -1.03
HMGB1P4-201ENST00000455362 RYDENQ9NUL5 291 aaKnown RBP8.62□□□□□ -1.03
HMGB1P4-201ENST00000455362 NUBP1P53384 320 aa8.61□□□□□ -1.03
HMGB1P4-201ENST00000455362 STK25O00506 426 aa8.59□□□□□ -1.03
HMGB1P4-201ENST00000455362 VGFO15240 615 aaPredicted RBP8.59□□□□□ -1.03
HMGB1P4-201ENST00000455362 RNF25Q96BH1 459 aaPredicted RBP8.59□□□□□ -1.03
HMGB1P4-201ENST00000455362 FAM212AQ96EL1 285 aa8.59□□□□□ -1.03
HMGB1P4-201ENST00000455362 GTPBP6O43824 516 aaPredicted RBP8.56□□□□□ -1.04
HMGB1P4-201ENST00000455362 P3H3Q8IVL6 736 aa8.56□□□□□ -1.04
HMGB1P4-201ENST00000455362 BRPF1P55201 1214 aaPredicted RBP8.55□□□□□ -1.04
HMGB1P4-201ENST00000455362 RASEFQ8IZ41 740 aa8.55□□□□□ -1.04
HMGB1P4-201ENST00000455362 PLSCR2Q9NRY7 297 aa8.55□□□□□ -1.04
HMGB1P4-201ENST00000455362 NKX1-1Q15270 411 aaPredicted RBP8.54□□□□□ -1.04
HMGB1P4-201ENST00000455362 LMOD2Q6P5Q4 547 aa8.54□□□□□ -1.04
HMGB1P4-201ENST00000455362 HAX1O00165 279 aa8.52□□□□□ -1.05
HMGB1P4-201ENST00000455362 CHRM1P11229 460 aaPredicted RBP8.51□□□□□ -1.05
HMGB1P4-201ENST00000455362 CFTRP13569 1480 aa8.51□□□□□ -1.05
HMGB1P4-201ENST00000455362 CADPSQ9ULU8 1353 aa8.5□□□□□ -1.05
HMGB1P4-201ENST00000455362 CD44P16070 742 aaKnown RBP8.5□□□□□ -1.05
HMGB1P4-201ENST00000455362 SGIP1Q9BQI5 828 aa8.5□□□□□ -1.05
HMGB1P4-201ENST00000455362 STK24Q9Y6E0 443 aa8.5□□□□□ -1.05
HMGB1P4-201ENST00000455362 NEUROD2Q15784 382 aa8.49□□□□□ -1.05
HMGB1P4-201ENST00000455362 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.49□□□□□ -1.05
HMGB1P4-201ENST00000455362 BCL11BQ9C0K0 894 aaPredicted RBP8.48□□□□□ -1.05
HMGB1P4-201ENST00000455362 CCDC61Q9Y6R9 512 aa8.48□□□□□ -1.05
HMGB1P4-201ENST00000455362 UBTFP17480 764 aaKnown RBP8.47□□□□□ -1.05
HMGB1P4-201ENST00000455362 NPM2Q86SE8 214 aaKnown RBP8.47□□□□□ -1.05
HMGB1P4-201ENST00000455362 WDR70Q9NW82 654 aa8.46□□□□□ -1.06
HMGB1P4-201ENST00000455362 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.45□□□□□ -1.06
HMGB1P4-201ENST00000455362 ZFP91Q96JP5 570 aaPredicted RBP8.45□□□□□ -1.06
HMGB1P4-201ENST00000455362 PRDM2Q13029 1718 aa8.45□□□□□ -1.06
HMGB1P4-201ENST00000455362 NESP48681 1621 aa8.44□□□□□ -1.06
HMGB1P4-201ENST00000455362 TRIM26Q12899 539 aaPredicted RBP8.44□□□□□ -1.06
HMGB1P4-201ENST00000455362 ZNF579Q8NAF0 562 aaKnown RBP8.44□□□□□ -1.06
HMGB1P4-201ENST00000455362 ZRANB1Q9UGI0 708 aa8.44□□□□□ -1.06
HMGB1P4-201ENST00000455362 ABCC8Q09428 1581 aa8.44□□□□□ -1.06
HMGB1P4-201ENST00000455362 TSPYL2Q9H2G4 693 aaPredicted RBP8.43□□□□□ -1.06
HMGB1P4-201ENST00000455362 LAMC3Q9Y6N6 1575 aa8.43□□□□□ -1.06
HMGB1P4-201ENST00000455362 WRNQ14191 1432 aaPredicted RBP eCLIP8.4□□□□□ -1.06
HMGB1P4-201ENST00000455362 PHF12Q96QT6 1004 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms