RNA–Protein interactions for RNA: ENST00000452776.1

SMCO1-202, Transcript of single-pass membrane protein with coiled-coil domains 1, humanhuman

TSL 1 (best)

Gene SMCO1, Length 1,846 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO1-202ENST00000452776 CCDC136Q96JN2 1154 aa11.54□□□□□ -0.56
SMCO1-202ENST00000452776 RSPH6AQ9H0K4 717 aa11.54□□□□□ -0.56
SMCO1-202ENST00000452776 ANP32CO43423 234 aa11.53□□□□□ -0.56
SMCO1-202ENST00000452776 DSG3P32926 999 aa11.53□□□□□ -0.56
SMCO1-202ENST00000452776 ANP32AP39687 249 aaKnown RBP11.53□□□□□ -0.56
SMCO1-202ENST00000452776 ZBTB47Q9UFB7 747 aaPredicted RBP11.53□□□□□ -0.56
SMCO1-202ENST00000452776 IPO9Q96P70 1041 aaKnown RBP11.52□□□□□ -0.57
SMCO1-202ENST00000452776 TIMELESSQ9UNS1 1208 aa11.52□□□□□ -0.57
SMCO1-202ENST00000452776 NBR1Q14596 966 aa11.51□□□□□ -0.57
SMCO1-202ENST00000452776 WASHC2AQ641Q2 1341 aa11.51□□□□□ -0.57
SMCO1-202ENST00000452776 KCNH8Q96L42 1107 aa11.49□□□□□ -0.57
SMCO1-202ENST00000452776 WASHC2CQ9Y4E1 1318 aa11.48□□□□□ -0.57
SMCO1-202ENST00000452776 GOLGA3Q08378 1498 aa11.48□□□□□ -0.57
SMCO1-202ENST00000452776 UBTFP17480 764 aaKnown RBP11.48□□□□□ -0.57
SMCO1-202ENST00000452776 IL27Q8NEV9 243 aa11.47□□□□□ -0.57
SMCO1-202ENST00000452776 PPM1GO15355 546 aaPredicted RBP11.46□□□□□ -0.58
SMCO1-202ENST00000452776 PPP1R15AO75807 674 aaPredicted RBP11.46□□□□□ -0.58
SMCO1-202ENST00000452776 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.44□□□□□ -0.58
SMCO1-202ENST00000452776 VPS8Q8N3P4 1428 aa11.43□□□□□ -0.58
SMCO1-202ENST00000452776 CUX2O14529 1486 aa11.43□□□□□ -0.58
SMCO1-202ENST00000452776 DDX10Q13206 875 aaKnown RBP11.42□□□□□ -0.58
SMCO1-202ENST00000452776 TRIM52Q96A61 297 aa11.42□□□□□ -0.58
SMCO1-202ENST00000452776 PAK3O75914 559 aaPredicted RBP11.4□□□□□ -0.58
SMCO1-202ENST00000452776 CEP164Q9UPV0 1460 aa11.4□□□□□ -0.59
SMCO1-202ENST00000452776 RTN4Q9NQC3 1192 aaKnown RBP11.37□□□□□ -0.59
SMCO1-202ENST00000452776 CAPN15O75808 1086 aa11.37□□□□□ -0.59
SMCO1-202ENST00000452776 FAM43AQ8N2R8 423 aa11.36□□□□□ -0.59
SMCO1-202ENST00000452776 CLIP1P30622 1438 aa11.36□□□□□ -0.59
SMCO1-202ENST00000452776 EIF4G1Q04637 1599 aaKnown RBP11.35□□□□□ -0.59
SMCO1-202ENST00000452776 NEFMP07197 916 aa11.33□□□□□ -0.6
SMCO1-202ENST00000452776 PODXL2Q9NZ53 605 aa11.33□□□□□ -0.6
SMCO1-202ENST00000452776 BAZ1BQ9UIG0 1483 aaKnown RBP11.33□□□□□ -0.6
SMCO1-202ENST00000452776 HNRNPUQ00839 825 aaKnown RBP eCLIP11.32□□□□□ -0.6
SMCO1-202ENST00000452776 GSE1Q14687 1217 aa11.32□□□□□ -0.6
SMCO1-202ENST00000452776 NACADO15069 1562 aa11.32□□□□□ -0.6
SMCO1-202ENST00000452776 CCDC88BA6NC98 1476 aa11.31□□□□□ -0.6
SMCO1-202ENST00000452776 SPINK5Q9NQ38 1064 aaPredicted RBP11.31□□□□□ -0.6
SMCO1-202ENST00000452776 RRBP1Q9P2E9 1410 aaKnown RBP11.3□□□□□ -0.6
SMCO1-202ENST00000452776 SOGA1O94964 1423 aa11.3□□□□□ -0.6
SMCO1-202ENST00000452776 DDRGK1Q96HY6 314 aa11.29□□□□□ -0.6
SMCO1-202ENST00000452776 KIF21BO75037 1637 aa11.29□□□□□ -0.6
SMCO1-202ENST00000452776 U3KPZ7 1027 aaPredicted RBP11.27□□□□□ -0.61
SMCO1-202ENST00000452776 ABCC8Q09428 1581 aa11.27□□□□□ -0.61
SMCO1-202ENST00000452776 B4GALNT3Q6L9W6 998 aa11.26□□□□□ -0.61
SMCO1-202ENST00000452776 ZMYND15Q9H091 742 aa11.26□□□□□ -0.61
SMCO1-202ENST00000452776 RRP9O43818 475 aaKnown RBP11.25□□□□□ -0.61
SMCO1-202ENST00000452776 BAZ1AQ9NRL2 1556 aaPredicted RBP11.25□□□□□ -0.61
SMCO1-202ENST00000452776 TCERG1O14776 1098 aaKnown RBP11.25□□□□□ -0.61
SMCO1-202ENST00000452776 IRX6P78412 446 aaPredicted RBP11.25□□□□□ -0.61
SMCO1-202ENST00000452776 MS4A1P11836 297 aa11.23□□□□□ -0.61
SMCO1-202ENST00000452776 ZBED9Q6R2W3 1325 aa11.23□□□□□ -0.61
SMCO1-202ENST00000452776 VSIG10Q8N0Z9 540 aa11.22□□□□□ -0.61
SMCO1-202ENST00000452776 SMARCA2P51531 1590 aa11.22□□□□□ -0.61
SMCO1-202ENST00000452776 BRPF3Q9ULD4 1205 aa11.21□□□□□ -0.62
SMCO1-202ENST00000452776 MROH2BQ7Z745 1585 aa11.2□□□□□ -0.62
SMCO1-202ENST00000452776 NCAPD3P42695 1498 aa11.2□□□□□ -0.62
SMCO1-202ENST00000452776 CCNB3Q8WWL7 1395 aa11.2□□□□□ -0.62
SMCO1-202ENST00000452776 SP7Q8TDD2 431 aaPredicted RBP11.19□□□□□ -0.62
SMCO1-202ENST00000452776 HSP90AA2PQ14568 343 aaPredicted RBP11.19□□□□□ -0.62
SMCO1-202ENST00000452776 WDR97A6NE52 1622 aa11.18□□□□□ -0.62
SMCO1-202ENST00000452776 SCRIBQ14160 1630 aa11.18□□□□□ -0.62
SMCO1-202ENST00000452776 MAPKBP1O60336 1514 aa11.17□□□□□ -0.62
SMCO1-202ENST00000452776 RNF123Q5XPI4 1314 aa11.17□□□□□ -0.62
SMCO1-202ENST00000452776 SETD5Q9C0A6 1442 aa11.17□□□□□ -0.62
SMCO1-202ENST00000452776 HSP90AA1P07900 732 aaKnown RBP11.16□□□□□ -0.62
SMCO1-202ENST00000452776 RAB3GAP2Q9H2M9 1393 aa11.16□□□□□ -0.62
SMCO1-202ENST00000452776 SMG6Q86US8 1419 aaKnown RBP11.15□□□□□ -0.62
SMCO1-202ENST00000452776 AMER1Q5JTC6 1135 aaPredicted RBP11.14□□□□□ -0.63
SMCO1-202ENST00000452776 WIZO95785 1651 aa11.14□□□□□ -0.63
SMCO1-202ENST00000452776 L1TD1Q5T7N2 865 aaKnown RBP11.14□□□□□ -0.63
SMCO1-202ENST00000452776 LAS1LQ9Y4W2 734 aaKnown RBP11.13□□□□□ -0.63
SMCO1-202ENST00000452776 RUSC2Q8N2Y8 1516 aa11.13□□□□□ -0.63
SMCO1-202ENST00000452776 CECR2Q9BXF3 1484 aa11.12□□□□□ -0.63
SMCO1-202ENST00000452776 FRAT1Q92837 279 aaPredicted RBP11.12□□□□□ -0.63
SMCO1-202ENST00000452776 SLC4A1APQ9BWU0 796 aaKnown RBP11.12□□□□□ -0.63
SMCO1-202ENST00000452776 NFKBIBQ15653 356 aa11.12□□□□□ -0.63
SMCO1-202ENST00000452776 CHRDL2Q6WN34 429 aa11.12□□□□□ -0.63
SMCO1-202ENST00000452776 DNAJC5Q9H3Z4 198 aa11.12□□□□□ -0.63
SMCO1-202ENST00000452776 TOP2AP11388 1531 aaKnown RBP11.11□□□□□ -0.63
SMCO1-202ENST00000452776 PDE4AP27815 886 aa11.11□□□□□ -0.63
SMCO1-202ENST00000452776 RBM42Q9BTD8 480 aaKnown RBP11.11□□□□□ -0.63
SMCO1-202ENST00000452776 BACH2Q9BYV9 841 aa11.11□□□□□ -0.63
SMCO1-202ENST00000452776 PLEKHG5O94827 1062 aa11.09□□□□□ -0.63
SMCO1-202ENST00000452776 CENPJQ9HC77 1338 aaPredicted RBP11.09□□□□□ -0.63
SMCO1-202ENST00000452776 FHAD1B1AJZ9 1412 aa11.09□□□□□ -0.63
SMCO1-202ENST00000452776 ARXQ96QS3 562 aa11.09□□□□□ -0.63
SMCO1-202ENST00000452776 NUDCQ9Y266 331 aa11.09□□□□□ -0.63
SMCO1-202ENST00000452776 TONSLQ96HA7 1378 aa11.06□□□□□ -0.64
SMCO1-202ENST00000452776 NPM2Q86SE8 214 aaKnown RBP11.06□□□□□ -0.64
SMCO1-202ENST00000452776 PNNQ9H307 717 aaKnown RBP11.06□□□□□ -0.64
SMCO1-202ENST00000452776 MAP3K1Q13233 1512 aa11.05□□□□□ -0.64
SMCO1-202ENST00000452776 SIN3AQ96ST3 1273 aa11.05□□□□□ -0.64
SMCO1-202ENST00000452776 PEG3Q9GZU2 1588 aa11.04□□□□□ -0.64
SMCO1-202ENST00000452776 CLCN1P35523 988 aa11.04□□□□□ -0.64
SMCO1-202ENST00000452776 KANK4Q5T7N3 995 aaPredicted RBP11.04□□□□□ -0.64
SMCO1-202ENST00000452776 PDCL3Q9H2J4 239 aa11.03□□□□□ -0.64
SMCO1-202ENST00000452776 CALD1Q05682 793 aaKnown RBP11.02□□□□□ -0.64
SMCO1-202ENST00000452776 NAP1L5Q96NT1 182 aaPredicted RBP11.02□□□□□ -0.64
SMCO1-202ENST00000452776 MRS2Q9HD23 443 aa11.02□□□□□ -0.65
SMCO1-202ENST00000452776 ZNF219Q9P2Y4 722 aaPredicted RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms